Pregenerated sensors for LINC01432 (Homo sapiens)
Ensembl gene IDs: ENSG00000234435Ensembl transcript IDs: ENST00000449427.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGCCTTTCCTTTATGCACTTTGCTCCAGGTAAGCTGGAGTGTTGCTaGTACAACCAGCGGCTTCTCCTCTGCATGGCAGACACTGCACCC | + |
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Preference number: 5 (lower is better) Translates to: GLSFMHFAPGKLECC*YNQRLLLCMADTAP Trigger: GGGTGCAGTGTCTGCCATGCAGAGGAGAAGCCGCTGGTTGTAGCAGCAACACTCCAGCTTACCTGGAGCAAAGTGCATAAAGGAAAGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS GCA 90 bp | ATTCCAAGATCACAGTGCAAGCAGGGGTGGTTTCTGGTGAGATCTTaGTGGTCAGGTTGCAGAGGGCCGCCTTCTTGCTGTGTCCTCACA | + |
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Preference number: 5 (lower is better) Translates to: IPRSQCKQGWFLVRS*WSGCRGPPSCCVLT Trigger: TGTGAGGACACAGCAAGAAGGCGGCCCTCTGCAACCTGACCAGCAAGATCTCACCAGAAACCACCCCTGCTTGCACTGTGATCTTGGAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS GCA 90 bp | CCAGGTAAGCTGGAGTGTTGCTGCTACAACCAGCGGCTTCTCCTCTaGATGGCAGACACTGCACCCATGGCCACAAGAGTTACCTTTTAT | + |
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Preference number: 5 (lower is better) Translates to: PGKLECCCYNQRLLL*MADTAPMATRVTFY Trigger: ATAAAAGGTAACTCTTGTGGCCATGGGTGCAGTGTCTGCCATGCAGAGGAGAAGCCGCTGGTTGTAGCAGCAACACTCCAGCTTACCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS GCA 90 bp | TTTCTGGTGAGATCTTGCTGGTCAGGTTGCAGAGGGCCGCCTTCTTaGTGTGTCCTCACATGGCCTTTCCTTTATGCACTTTGCTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: FLVRSCWSGCRGPPS*CVLTWPFLYALCSR Trigger: CCTGGAGCAAAGTGCATAAAGGAAAGGCCATGTGAGGACACAGCAAGAAGGCGGCCCTCTGCAACCTGACCAGCAAGATCTCACCAGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS CCA 90 bp | TGTCCTCACATGGCCTTTCCTTTATGCACTTTGCTCCAGGTAAGCTaGAGTGTTGCTGCTACAACCAGCGGCTTCTCCTCTGCATGGCAG | + |
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Preference number: 5 (lower is better) Translates to: CPHMAFPLCTLLQVS*SVAATTSGFSSAWQ Trigger: CTGCCATGCAGAGGAGAAGCCGCTGGTTGTAGCAGCAACACTCCAGCTTACCTGGAGCAAAGTGCATAAAGGAAAGGCCATGTGAGGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS CCA 90 bp | GTAAGCTGGAGTGTTGCTGCTACAACCAGCGGCTTCTCCTCTGCATaGCAGACACTGCACCCATGGCCACAAGAGTTACCTTTTATGATT | + |
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Preference number: 5 (lower is better) Translates to: VSWSVAATTSGFSSA*QTLHPWPQELPFMI Trigger: AATCATAAAAGGTAACTCTTGTGGCCATGGGTGCAGTGTCTGCCATGCAGAGGAGAAGCCGCTGGTTGTAGCAGCAACACTCCAGCTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS GCA 72 bp | CTGGAGTGTTGCTGCTACAACCAGCGGCTTCTCCTCTaGATGGCAGACACTGCACCCATGGCCACAAGAGTT | + |
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Preference number: 6 (lower is better) Translates to: LECCCYNQRLLL*MADTAPMATRV Trigger: AACTCTTGTGGCCATGGGTGCAGTGTCTGCCATGCAGAGGAGAAGCCGCTGGTTGTAGCAGCAACACTCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS CAA 72 bp | ATCACAGTGCAAGCAGGGGTGGTTTCTGGTGAGATCTaGCTGGTCAGGTTGCAGAGGGCCGCCTTCTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: ITVQAGVVSGEI*LVRLQRAAFLL Trigger: CAGCAAGAAGGCGGCCCTCTGCAACCTGACCAGCAAGATCTCACCAGAAACCACCCCTGCTTGCACTGTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS TCA 72 bp | TTCCAAGATCACAGTGCAAGCAGGGGTGGTTTCTGGTaGGATCTTGCTGGTCAGGTTGCAGAGGGCCGCCTT | + |
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Preference number: 6 (lower is better) Translates to: FQDHSASRGGFW*DLAGQVAEGRL Trigger: AAGGCGGCCCTCTGCAACCTGACCAGCAAGATCTCACCAGAAACCACCCCTGCTTGCACTGTGATCTTGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS GCA 72 bp | TTTATGCACTTTGCTCCAGGTAAGCTGGAGTGTTGCTaGTACAACCAGCGGCTTCTCCTCTGCATGGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: FMHFAPGKLECC*YNQRLLLCMAD Trigger: GTCTGCCATGCAGAGGAGAAGCCGCTGGTTGTAGCAGCAACACTCCAGCTTACCTGGAGCAAAGTGCATAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS CCA 72 bp | GAGGCTAGAATTCCAAGATCACAGTGCAAGCAGGGGTaGTTTCTGGTGAGATCTTGCTGGTCAGGTTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: EARIPRSQCKQG*FLVRSCWSGCR Trigger: TCTGCAACCTGACCAGCAAGATCTCACCAGAAACCACCCCTGCTTGCACTGTGATCTTGGAATTCTAGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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| CDS CAA 90 bp | GCTGTACTGGGAGTGATGGTGCCAGTGATCACCAGGATGGAGATTTaGCCATTTTCAAGATGGGTTCAACCCTTTCAGGATGTAGATTTT | + |
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Preference number: 6 (lower is better) Translates to: AVLGVMVPVITRMEI*PFSRWVQPFQDVDF Trigger: AAAATCTACATCCTGAAAGGGTTGAACCCATCTTGAAAATGGCAAAATCTCCATCCTGGTGATCACTGGCACCATCACTCCCAGTACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449427.3 |
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