Pregenerated sensors for LINC01428 (Homo sapiens)

Ensembl gene IDs: ENSG00000228888

Ensembl transcript IDs: ENST00000449581.1

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GGAAGCTGCCCAATTTCCTTGTGGAAGAAGTGTCTGAAGGCCACCTaGATCCAAGCATGCTGGGACCCCAGTCATGGACTTCTAAGCTTC	+
Preference number: 5 (lower is better) Translates to: GSCPISLWKKCLKAT*IQACWDPSHGLLSF Trigger: GAAGCTTAGAAGTCCATGACTGGGGTCCCAGCATGCTTGGATTCAGGTGGCCTTCAGACACTTCTTCCACAAGGAAATTGGGCAGCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS TCA 90 bp	TGTTCATTTCAGGAAGCTGCCCAATTTCCTTGTGGAAGAAGTGTCTaGAGGCCACCTGAATCCAAGCATGCTGGGACCCCAGTCATGGAC	+
Preference number: 5 (lower is better) Translates to: CSFQEAAQFPCGRSV*RPPESKHAGTPVMD Trigger: GTCCATGACTGGGGTCCCAGCATGCTTGGATTCAGGTGGCCTTCAGACACTTCTTCCACAAGGAAATTGGGCAGCTTCCTGAAATGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS CCA 90 bp	GTGTCTGAAGGCCACCTGAATCCAAGCATGCTGGGACCCCAGTCATaGACTTCTAAGCTTCCAGAACTCAAGCCTCTTCAATTATGTGAG	+
Preference number: 5 (lower is better) Translates to: VSEGHLNPSMLGPQS*TSKLPELKPLQLCE Trigger: CTCACATAATTGAAGAGGCTTGAGTTCTGGAAGCTTAGAAGTCCATGACTGGGGTCCCAGCATGCTTGGATTCAGGTGGCCTTCAGACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS TCA 90 bp	TATATATACTGTCTCCTGACGAAGGACCCTCCAGCAACTTCGGGCTaGAATGAAGCAGATTCACTCAATCCGCACAAACTCTCAGAAAAG	+
Preference number: 5 (lower is better) Translates to: YIYCLLTKDPPATSG*NEADSLNPHKLSEK Trigger: CTTTTCTGAGAGTTTGTGCGGATTGAGTGAATCTGCTTCATTTCAGCCCGAAGTTGCTGGAGGGTCCTTCGTCAGGAGACAGTATATATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS TCA 90 bp	GTTTCCAGAAATGTAACATCTTGTCGTAACACGTTTCAAAACAGATaGCAGGCCTTCCCCTCATCCTCCAATGTGGCTGATTACAAGCTT	+
Preference number: 5 (lower is better) Translates to: VSRNVTSCRNTFQNR*QAFPSSSNVADYKL Trigger: AAGCTTGTAATCAGCCACATTGGAGGATGAGGGGAAGGCCTGTCATCTGTTTTGAAACGTGTTACGACAAGATGTTACATTTCTGGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS TCA 90 bp	CTGAATAATTATTGCACTTCTGGCAAGTCTATATATACTGTCTCCTaGCGAAGGACCCTCCAGCAACTTCGGGCTGAAATGAAGCAGATT	+
Preference number: 5 (lower is better) Translates to: LNNYCTSGKSIYTVS*RRTLQQLRAEMKQI Trigger: AATCTGCTTCATTTCAGCCCGAAGTTGCTGGAGGGTCCTTCGTCAGGAGACAGTATATATAGACTTGCCAGAAGTGCAATAATTATTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS TCA 72 bp	CAGGAAGCTGCCCAATTTCCTTGTGGAAGAAGTGTCTaGAGGCCACCTGAATCCAAGCATGCTGGGACCCCA	+
Preference number: 6 (lower is better) Translates to: QEAAQFPCGRSV*RPPESKHAGTP Trigger: TGGGGTCCCAGCATGCTTGGATTCAGGTGGCCTTCAGACACTTCTTCCACAAGGAAATTGGGCAGCTTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS CCA 72 bp	GGCCACCTGAATCCAAGCATGCTGGGACCCCAGTCATaGACTTCTAAGCTTCCAGAACTCAAGCCTCTTCAA	+
Preference number: 6 (lower is better) Translates to: GHLNPSMLGPQS*TSKLPELKPLQ Trigger: TTGAAGAGGCTTGAGTTCTGGAAGCTTAGAAGTCCATGACTGGGGTCCCAGCATGCTTGGATTCAGGTGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS TCA 72 bp	CAGATGACAGGCCTTCCCCTCATCCTCCAATGTGGCTaGTTACAAGCTTCTGTCAAATTCCACCAACCCCCA	+
Preference number: 6 (lower is better) Translates to: QMTGLPLILQCG*LQASVKFHQPP Trigger: TGGGGGTTGGTGGAATTTGACAGAAGCTTGTAATCAGCCACATTGGAGGATGAGGGGAAGGCCTGTCATCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS TCA 72 bp	TGTCTCCTGACGAAGGACCCTCCAGCAACTTCGGGCTaGAATGAAGCAGATTCACTCAATCCGCACAAACTC	+
Preference number: 6 (lower is better) Translates to: CLLTKDPPATSG*NEADSLNPHKL Trigger: GAGTTTGTGCGGATTGAGTGAATCTGCTTCATTTCAGCCCGAAGTTGCTGGAGGGTCCTTCGTCAGGAGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS CCA 72 bp	CTTTCACAAAGGCTTGCAGTCATGAAGCGGAAGGTCTaGGAGCTGATCCATAATTCCCATGGCTTTACGGGT	+
Preference number: 6 (lower is better) Translates to: LSQRLAVMKRKV*ELIHNSHGFTG Trigger: ACCCGTAAAGCCATGGGAATTATGGATCAGCTCCCAGACCTTCCGCTTCATGACTGCAAGCCTTTGTGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS GCA 72 bp	TTCCCATGGCTTTACGGGTTGTTCATTTCAGGAAGCTaGCCAATTTCCTTGTGGAAGAAGTGTCTGAAGGCC	+
Preference number: 6 (lower is better) Translates to: FPWLYGLFISGS*PISLWKKCLKA Trigger: GGCCTTCAGACACTTCTTCCACAAGGAAATTGGGCAGCTTCCTGAAATGAACAACCCGTAAAGCCATGGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS TCA 72 bp	TATTGCACTTCTGGCAAGTCTATATATACTGTCTCCTaGCGAAGGACCCTCCAGCAACTTCGGGCTGAAATG	+
Preference number: 6 (lower is better) Translates to: YCTSGKSIYTVS*RRTLQQLRAEM Trigger: CATTTCAGCCCGAAGTTGCTGGAGGGTCCTTCGTCAGGAGACAGTATATATAGACTTGCCAGAAGTGCAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS TCA 72 bp	AATGTAACATCTTGTCGTAACACGTTTCAAAACAGATaGCAGGCCTTCCCCTCATCCTCCAATGTGGCTGAT	+
Preference number: 6 (lower is better) Translates to: NVTSCRNTFQNR*QAFPSSSNVAD Trigger: ATCAGCCACATTGGAGGATGAGGGGAAGGCCTGTCATCTGTTTTGAAACGTGTTACGACAAGATGTTACATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449581.1
CDS GCA 72 bp	TTTTTGAACTGTTGGAAGCATGATCGTCACAGCAAGTaGCATTATCCTTGTTTCATTGCTAAGATTCCTGAA	+
Preference number: 6 (lower is better) Translates to: FLNCWKHDRHSK*HYPCFIAKIPE Trigger: TTCAGGAATCTTAGCAATGAAACAAGGATAATGGCACTTGCTGTGACGATCATGCTTCCAACAGTTCAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449581.1