Pregenerated sensors for LINC01409 (Homo sapiens)
Ensembl gene IDs: ENSG00000237491Ensembl transcript IDs: ENST00000434264.6, ENST00000443772.2, ENST00000585826.1, ENST00000586288.1, ENST00000586928.5, ENST00000589899.5, ENST00000590848.5, ENST00000591702.1, ENST00000592547.1, ENST00000665867.1
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GTAGCATGCTGGGGCCTCTGGAGCACTTCACTGCACATGTTCTCATaGGCAGTTTCGGCTGGAGAAACAGTGTCCATCAGACTGGATGTC | + |
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Preference number: 5 (lower is better) Translates to: VACWGLWSTSLHMFS*AVSAGETVSIRLDV Trigger: GACATCCAGTCTGATGGACACTGTTTCTCCAGCCGAAACTGCTCATGAGAACATGTGCAGTGAAGTGCTCCAGAGGCCCCAGCATGCTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000586288.1 ENST00000590848.5 |
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| CDS CCA 90 bp | GCAGGCAGGCTGAGTCTGAAAAAGGAGTCAGTGAAGGGAGACGGGTaGGGCTGTTTTATAGGATTTGGGTGGGTAGTGGACAATTACAGT | + |
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Preference number: 5 (lower is better) Translates to: AGRLSLKKESVKGDG*GCFIGFGWVVDNYS Trigger: ACTGTAATTGTCCACTACCCACCCAAATCCTATAAAACAGCCCCACCCGTCTCCCTTCACTGACTCCTTTTTCAGACTCAGCCTGCCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS CCA 90 bp | TCACAAGTTCAGCAAAGTTACCTCTTGGCACACCCTCCTGGTGTCTaGTGTGATGGAGGGGATTATTCCTCATCTCTCCTGAGTTCAGTC | + |
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Preference number: 5 (lower is better) Translates to: SQVQQSYLLAHPPGV*CDGGDYSSSLLSSV Trigger: GACTGAACTCAGGAGAGATGAGGAATAATCCCCTCCATCACACCAGACACCAGGAGGGTGTGCCAAGAGGTAACTTTGCTGAACTTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000590848.5 |
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| CDS TCA 90 bp | TCATCTGTGATGAGGAATGGAATTGGACTTGGTGCAGCTCTATCTTaGCTGGGAGCCACAAAGGCAAAAATGTTGAAGACCGAACACCCC | + |
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Preference number: 5 (lower is better) Translates to: SSVMRNGIGLGAALS*LGATKAKMLKTEHP Trigger: GGGGTGTTCGGTCTTCAACATTTTTGCCTTTGTGGCTCCCAGTCAAGATAGAGCTGCACCAAGTCCAATTCCATTCCTCATCACAGATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS TCA 90 bp | GCAGTATTATTAGAATACCTTGGCACACCCTCCTGGTGTCTGGTGTaGTGGAGGGGATTATTCCTCATCTCTCCTGAGTTCAGTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: AVLLEYLGTPSWCLV*WRGLFLISPEFSLL Trigger: CAGAAGACTGAACTCAGGAGAGATGAGGAATAATCCCCTCCATCACACCAGACACCAGGAGGGTGTGCCAAGGTATTCTAATAATACTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000586288.1 |
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| CDS GCA 90 bp | TGCCATACTGATTACAGAACAGAGGATCCCATCCAAGCTAGCATATaGAGGAAAGGAGGATCTTATTGTGAGGCTGTGGGGATGTTCCCT | + |
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Preference number: 5 (lower is better) Translates to: CHTDYRTEDPIQASI*RKGGSYCEAVGMFP Trigger: AGGGAACATCCCCACAGCCTCACAATAAGATCCTCCTTTCCTGCATATGCTAGCTTGGATGGGATCCTCTGTTCTGTAATCAGTATGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443772.2 |
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| CDS GCA 90 bp | TTACTACCTGCCCTTGGGACTGTGTTTTTGTCTTACCTAAGAATTTaGCCATGGGTACAACAGCATGCTGACACAAAGCAAGAAGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: LLPALGTVFLSYLRI*PWVQQHADTKQEAC Trigger: ACAAGCTTCTTGCTTTGTGTCAGCATGCTGTTGTACCCATGGGCAAATTCTTAGGTAAGACAAAAACACAGTCCCAAGGGCAGGTAGTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS CCA 90 bp | CCTGCCCTTGGGACTGTGTTTTTGTCTTACCTAAGAATTTGCCCATaGGTACAACAGCATGCTGACACAAAGCAAGAAGCTTGTATAGTT | + |
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Preference number: 5 (lower is better) Translates to: PALGTVFLSYLRICP*VQQHADTKQEACIV Trigger: AACTATACAAGCTTCTTGCTTTGTGTCAGCATGCTGTTGTACCCATGGGCAAATTCTTAGGTAAGACAAAAACACAGTCCCAAGGGCAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS TCA 90 bp | GATATCACACCAAAAGCTCAGGCAACAACAAGAAGGATAAATACATaGGACTACATCAGACTACATCAAACTGAAAACCTTCTGCACGTT | + |
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Preference number: 5 (lower is better) Translates to: DITPKAQATTRRINT*DYIRLHQTENLLHV Trigger: AACGTGCAGAAGGTTTTCAGTTTGATGTAGTCTGATGTAGTCTCATGTATTTATCCTTCTTGTTGTTGCCTGAGCTTTTGGTGTGATATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000586928.5 ENST00000591702.1 ENST00000665867.1 |
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| CDS TCA 90 bp | GTTTTTGTCTTACCTAAGAATTTGCCCATGGGTACAACAGCATGCTaGCACAAAGCAAGAAGCTTGTATAGTTCTGATCTTAAAGTAGAA | + |
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Preference number: 5 (lower is better) Translates to: VFVLPKNLPMGTTAC*HKARSLYSSDLKVE Trigger: TTCTACTTTAAGATCAGAACTATACAAGCTTCTTGCTTTGTGTCAGCATGCTGTTGTACCCATGGGCAAATTCTTAGGTAAGACAAAAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS GCA 90 bp | CTTTCTTGTACAAAAAGATATTCTGGGCTCATCTTATACTTTCTGTaGTCTAGCTTTGAAATTACCGTTTCTTCAAAGAGCTCTGTTTCC | + |
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Preference number: 5 (lower is better) Translates to: LSCTKRYSGLILYFL*SSFEITVSSKSSVS Trigger: GGAAACAGAGCTCTTTGAAGAAACGGTAATTTCAAAGCTAGAGCACAGAAAGTATAAGATGAGCCCAGAATATCTTTTTGTACAAGAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434264.6 ENST00000585826.1 ENST00000589899.5 ENST00000592547.1 |
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| CDS CAA 72 bp | TTTGGGTGGGTAGTGGACAATTACAGTCAAAGGGGGTaGTTCTCTGGTGGGCAGGGACGGGGGTCACAAGGT | + |
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Preference number: 6 (lower is better) Translates to: FGWVVDNYSQRG*FSGGQGRGSQG Trigger: ACCTTGTGACCCCCGTCCCTGCCCACCAGAGAACAACCCCCTTTGACTGTAATTGTCCACTACCCACCCAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS CAA 90 bp | TTTATAGGATTTGGGTGGGTAGTGGACAATTACAGTCAAAGGGGGTaGTTCTCTGGTGGGCAGGGACGGGGGTCACAAGGTGCTCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: FIGFGWVVDNYSQRG*FSGGQGRGSQGAQR Trigger: CCGCTGAGCACCTTGTGACCCCCGTCCCTGCCCACCAGAGAACAACCCCCTTTGACTGTAATTGTCCACTACCCACCCAAATCCTATAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS TCA 72 bp | TGGGGCCTCTGGAGCACTTCACTGCACATGTTCTCATaGGCAGTTTCGGCTGGAGAAACAGTGTCCATCAGA | + |
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Preference number: 6 (lower is better) Translates to: WGLWSTSLHMFS*AVSAGETVSIR Trigger: TCTGATGGACACTGTTTCTCCAGCCGAAACTGCTCATGAGAACATGTGCAGTGAAGTGCTCCAGAGGCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000586288.1 ENST00000590848.5 |
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| CDS CCA 72 bp | CTGAGTCTGAAAAAGGAGTCAGTGAAGGGAGACGGGTaGGGCTGTTTTATAGGATTTGGGTGGGTAGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: LSLKKESVKGDG*GCFIGFGWVVD Trigger: GTCCACTACCCACCCAAATCCTATAAAACAGCCCCACCCGTCTCCCTTCACTGACTCCTTTTTCAGACTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS TCA 72 bp | CCCAGCCTTTGGGCATCTACAGTGGATTTTTGGGATTaGGTTGCCTGGAACTTAGGATTGCAGGTTTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: PSLWASTVDFWD*VAWNLGLQVWR Trigger: CCTCCAAACCTGCAATCCTAAGTTCCAGGCAACTCAATCCCAAAAATCCACTGTAGATGCCCAAAGGCTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS TCA 72 bp | CTCTATCTTGACTGGGAGCCACAAAGGCAAAAATGTTaGAGACCGAACACCCCAGCCTTTGGGCATCTACAG | + |
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Preference number: 6 (lower is better) Translates to: LYLDWEPQRQKC*RPNTPAFGHLQ Trigger: CTGTAGATGCCCAAAGGCTGGGGTGTTCGGTCTTCAACATTTTTGCCTTTGTGGCTCCCAGTCAAGATAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS GCA 72 bp | TCATCTCTCCTGAGTTCAGTCTTCTGTAATGTAGCATaGTGGGGCCTCTGGAGCACTTCACTGCACATGTTC | + |
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Preference number: 6 (lower is better) Translates to: SSLLSSVFCNVA*WGLWSTSLHMF Trigger: GAACATGTGCAGTGAAGTGCTCCAGAGGCCCCAGCATGCTACATTACAGAAGACTGAACTCAGGAGAGATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000586288.1 ENST00000590848.5 |
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| CDS CCA 72 bp | TCTCTCCTGAGTTCAGTCTTCTGTAATGTAGCATGCTaGGGCCTCTGGAGCACTTCACTGCACATGTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: SLLSSVFCNVAC*GLWSTSLHMFS Trigger: TGAGAACATGTGCAGTGAAGTGCTCCAGAGGCCCCAGCATGCTACATTACAGAAGACTGAACTCAGGAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000586288.1 ENST00000590848.5 |
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| CDS CAA 72 bp | CCCCAGCCTTTGGGCATCTACAGTGGATTTTTGGGATaGAGTTGCCTGGAACTTAGGATTGCAGGTTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: PQPLGIYSGFLG*SCLELRIAGLE Trigger: CTCCAAACCTGCAATCCTAAGTTCCAGGCAACTCAATCCCAAAAATCCACTGTAGATGCCCAAAGGCTGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS CAA 72 bp | CGAACACCCCAGCCTTTGGGCATCTACAGTGGATTTTaGGGATTGAGTTGCCTGGAACTTAGGATTGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: RTPQPLGIYSGF*GLSCLELRIAG Trigger: ACCTGCAATCCTAAGTTCCAGGCAACTCAATCCCAAAAATCCACTGTAGATGCCCAAAGGCTGGGGTGTTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS GCA 72 bp | GATTACAGAACAGAGGATCCCATCCAAGCTAGCATATaGAGGAAAGGAGGATCTTATTGTGAGGCTGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: DYRTEDPIQASI*RKGGSYCEAVG Trigger: CCCCACAGCCTCACAATAAGATCCTCCTTTCCTGCATATGCTAGCTTGGATGGGATCCTCTGTTCTGTAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443772.2 |
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| CDS TCA 72 bp | ATGAGGAATGGAATTGGACTTGGTGCAGCTCTATCTTaGCTGGGAGCCACAAAGGCAAAAATGTTGAAGACC | + |
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Preference number: 6 (lower is better) Translates to: MRNGIGLGAALS*LGATKAKMLKT Trigger: GGTCTTCAACATTTTTGCCTTTGTGGCTCCCAGTCAAGATAGAGCTGCACCAAGTCCAATTCCATTCCTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS CCA 72 bp | GGGACTGTGTTTTTGTCTTACCTAAGAATTTGCCCATaGGTACAACAGCATGCTGACACAAAGCAAGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: GTVFLSYLRICP*VQQHADTKQEA Trigger: AGCTTCTTGCTTTGTGTCAGCATGCTGTTGTACCCATGGGCAAATTCTTAGGTAAGACAAAAACACAGTCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000591702.1 |
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| CDS TCA 72 bp | CTGGGTTATAATTCTGTGACTGTCACCATTTTATTCTaGTGTTCAAATCGCCCCATATTTGGCCTGTTGGAA | + |
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Preference number: 6 (lower is better) Translates to: LGYNSVTVTILF*CSNRPIFGLLE Trigger: TTCCAACAGGCCAAATATGGGGCGATTTGAACATCAGAATAAAATGGTGACAGTCACAGAATTATAACCCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000585826.1 ENST00000592547.1 |
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| CDS CAA 72 bp | ATTCTGGGCTCATCTTATACTTTCTGTGCTCTAGCTTaGAAATTACCGTTTCTTCAAAGAGCTCTGTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: ILGSSYTFCALA*KLPFLQRALFP Trigger: AGGAAACAGAGCTCTTTGAAGAAACGGTAATTTCAAAGCTAGAGCACAGAAAGTATAAGATGAGCCCAGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000434264.6 ENST00000585826.1 ENST00000589899.5 ENST00000592547.1 |
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| CDS CAA 90 bp | TTTTTGGGCATGTCTCCATCATTCTTTGAGCATTGCCTTACTTTCTaGTACAAAAAGATATTCTGGGCTCATCTTATACTTTCTGTGCTC | + |
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Preference number: 6 (lower is better) Translates to: FLGMSPSFFEHCLTF*YKKIFWAHLILSVL Trigger: GAGCACAGAAAGTATAAGATGAGCCCAGAATATCTTTTTGTACAAGAAAGTAAGGCAATGCTCAAAGAATGATGGAGACATGCCCAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENST00000434264.6 ENST00000585826.1 ENST00000589899.5 ENST00000592547.1 |
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| CDS TCA 72 bp | GTCATGAATTCCTTTCTTCACTGGGTTATAATTCTGTaGCTGTCACCATTTTATTCTGATGTTCAAATCGCC | + |
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Preference number: 6 (lower is better) Translates to: VMNSFLHWVIIL*LSPFYSDVQIA Trigger: GGCGATTTGAACATCAGAATAAAATGGTGACAGTCACAGAATTATAACCCAGTGAAGAAAGGAATTCATGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000585826.1 ENST00000592547.1 |
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| CDS TCA 72 bp | CCAAAAGCTCAGGCAACAACAAGAAGGATAAATACATaGGACTACATCAGACTACATCAAACTGAAAACCTT | + |
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Preference number: 6 (lower is better) Translates to: PKAQATTRRINT*DYIRLHQTENL Trigger: AAGGTTTTCAGTTTGATGTAGTCTGATGTAGTCTCATGTATTTATCCTTCTTGTTGTTGCCTGAGCTTTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000586928.5 ENST00000591702.1 ENST00000665867.1 |
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| CDS CAA 90 bp | CAAAAAGATATTCTGGGCTCATCTTATACTTTCTGTGCTCTAGCTTaGAAATTACCGTTTCTTCAAAGAGCTCTGTTTCCTTTTAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: QKDILGSSYTFCALA*KLPFLQRALFPFRG Trigger: TCCTCTAAAAGGAAACAGAGCTCTTTGAAGAAACGGTAATTTCAAAGCTAGAGCACAGAAAGTATAAGATGAGCCCAGAATATCTTTTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000434264.6 ENST00000585826.1 ENST00000589899.5 ENST00000592547.1 |
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| CDS CAA 90 bp | ATGATTTTGATTTACTCTGTTACTGATAATGCTCAACTAAACCTCTaGATTAAAGTAGTTCTGCCAAGATTCTCACGTCAAGGTGCACTT | + |
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Preference number: 6 (lower is better) Translates to: MILIYSVTDNAQLNL*IKVVLPRFSRQGAL Trigger: AAGTGCACCTTGACGTGAGAATCTTGGCAGAACTACTTTAATCAAGAGGTTTAGTTGAGCATTATCAGTAACAGAGTAAATCAAAATCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000592547.1 |
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| CDS CCA 72 bp | AAGAATAATCTCTTCAATAAATGGTGTTATGAAAATTaGATATCCAACACTGGGGAGACTGGACCCTTATCT | + |
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Preference number: 6 (lower is better) Translates to: KNNLFNKWCYEN*ISNTGETGPLS Trigger: AGATAAGGGTCCAGTCTCCCCAGTGTTGGATATCCAATTTTCATAACACCATTTATTGAAGAGATTATTCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000586928.5 ENST00000591702.1 ENST00000665867.1 |
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| CDS CAA 72 bp | ATGTCTCCATCATTCTTTGAGCATTGCCTTACTTTCTaGTACAAAAAGATATTCTGGGCTCATCTTATACTT | + |
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Preference number: 6 (lower is better) Translates to: MSPSFFEHCLTF*YKKIFWAHLIL Trigger: AAGTATAAGATGAGCCCAGAATATCTTTTTGTACAAGAAAGTAAGGCAATGCTCAAAGAATGATGGAGACAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434264.6 ENST00000585826.1 ENST00000589899.5 ENST00000592547.1 |
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| CDS CAA 72 bp | ATTTACTCTGTTACTGATAATGCTCAACTAAACCTCTaGATTAAAGTAGTTCTGCCAAGATTCTCACGTCAA | + |
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Preference number: 6 (lower is better) Translates to: IYSVTDNAQLNL*IKVVLPRFSRQ Trigger: TTGACGTGAGAATCTTGGCAGAACTACTTTAATCAAGAGGTTTAGTTGAGCATTATCAGTAACAGAGTAAAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000592547.1 |
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