Pregenerated sensors for LINC01392 (Homo sapiens)

Ensembl gene IDs: ENSG00000233607

Ensembl transcript IDs: ENST00000419883.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GACTTATTAGACTCTCCAAAGCAGTTCTCATACACTTTAACAAGATaGAGATATACTAGGAAAGGTAATTGGGTGAGCATTACTAAGTGT	+
Preference number: 5 (lower is better) Translates to: DLLDSPKQFSYTLTR*RYTRKGNWVSITKC Trigger: ACACTTAGTAATGCTCACCCAATTACCTTTCCTAGTATATCTTCATCTTGTTAAAGTGTATGAGAACTGCTTTGGAGAGTCTAATAAGTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419883.1
CDS CCA 72 bp	ATTATCCAGTTGGTTTTACTAAGCATGGTGCTGCAGTaGAAGCTTCGGATTTCCCTTAAGATTGCTTTAACA	+
Preference number: 6 (lower is better) Translates to: IIQLVLLSMVLQ*KLRISLKIALT Trigger: TGTTAAAGCAATCTTAAGGGAAATCCGAAGCTTCCACTGCAGCACCATGCTTAGTAAAACCAACTGGATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419883.1
CDS TCA 72 bp	GACTCTCCAAAGCAGTTCTCATACACTTTAACAAGATaGAGATATACTAGGAAAGGTAATTGGGTGAGCATT	+
Preference number: 6 (lower is better) Translates to: DSPKQFSYTLTR*RYTRKGNWVSI Trigger: AATGCTCACCCAATTACCTTTCCTAGTATATCTTCATCTTGTTAAAGTGTATGAGAACTGCTTTGGAGAGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419883.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu