Pregenerated sensors for LINC01361 (Homo sapiens)
Ensembl gene IDs: ENSG00000236268Ensembl transcript IDs: ENST00000421931.1, ENST00000452834.5, ENST00000655348.1, ENST00000659693.1
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GATAAGTGGCCGGACATTGAGAGGATGTTGAGGGAAGCACACCAATaGAAGAGCACACTGACTGACGCCGGCAGGAGGCCAGGCCGTCCT | + |
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Preference number: 5 (lower is better) Translates to: DKWPDIERMLREAHQ*KSTLTDAGRRPGRP Trigger: AGGACGGCCTGGCCTCCTGCCGGCGTCAGTCAGTGTGCTCTTCCATTGGTGTGCTTCCCTCAACATCCTCTCAATGTCCGGCCACTTATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS TCA 90 bp | AGTGAGGCACGGAAGAAGCGAGCCACACCCCCATCACCAGCCCTGTaGGGGAACAAGGGAACTTTCCCATTTCAACAGCATGTATCACCC | + |
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Preference number: 5 (lower is better) Translates to: SEARKKRATPPSPAL*GNKGTFPFQQHVSP Trigger: GGGTGATACATGCTGTTGAAATGGGAAAGTTCCCTTGTTCCCTCACAGGGCTGGTGATGGGGGTGTGGCTCGCTTCTTCCGTGCCTCACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CCA 90 bp | CCTATAGACAGCAAACTAAAAGAGTACCCTGTAACACACACCCACTaGGGCTTCAGCTGTAGACACTCACCTCTAGACACTGCCGTGGGG | + |
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Preference number: 5 (lower is better) Translates to: PIDSKLKEYPVTHTH*GFSCRHSPLDTAVG Trigger: CCCCACGGCAGTGTCTAGAGGTGAGTGTCTACAGCTGAAGCCCCAGTGGGTGTGTGTTACAGGGTACTCTTTTAGTTTGCTGTCTATAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS TCA 90 bp | ACACAGAAATGCCTGGGCAGAGCTGTGACCAGCTGCTCTGTTCTGTaGGGGAACTTCAACCATAGTTCAGGCGACAAGAAGCCCTTATAT | + |
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Preference number: 5 (lower is better) Translates to: TQKCLGRAVTSCSVL*GNFNHSSGDKKPLY Trigger: ATATAAGGGCTTCTTGTCGCCTGAACTATGGTTGAAGTTCCCTCACAGAACAGAGCAGCTGGTCACAGCTCTGCCCAGGCATTTCTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS GCA 90 bp | CGCCTTGGAATCCTGCATTCCTGTGGTCTGAAATGCTTCTTGATATaGAAGTACAGCAGGAAGATGCAGACACAGAAATGCCTGGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: RLGILHSCGLKCFLI*KYSRKMQTQKCLGR Trigger: TCTGCCCAGGCATTTCTGTGTCTGCATCTTCCTGCTGTACTTGCATATCAAGAAGCATTTCAGACCACAGGAATGCAGGATTCCAAGGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS TCA 90 bp | GAATGTGTGCCTGAGTGCGTGTGCACACATGCTAAAGGAACAGCGTaGGCCAAGGCACAGAGTCATAGTGAGTACATTTTAAGTGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: ECVPECVCTHAKGTA*AKAQSHSEYILSED Trigger: ATCTTCACTTAAAATGTACTCACTATGACTCTGTGCCTTGGCTCACGCTGTTCCTTTAGCATGTGTGCACACGCACTCAGGCACACATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS GCA 90 bp | AAGGTAAATTGGCGCCTTGGAATCCTGCATTCCTGTGGTCTGAAATaGTTCTTGATATGCAAGTACAGCAGGAAGATGCAGACACAGAAA | + |
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Preference number: 5 (lower is better) Translates to: KVNWRLGILHSCGLK*FLICKYSRKMQTQK Trigger: TTTCTGTGTCTGCATCTTCCTGCTGTACTTGCATATCAAGAAGCATTTCAGACCACAGGAATGCAGGATTCCAAGGCGCCAATTTACCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS TCA 90 bp | TGCGTAGGTTATGTGCAAATACTATGCCACTTTATTTCAGAGATTTaGGCATCCACGGATTTTGGTAACCTCAGGGGTTCAGGAGCCAAT | + |
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Preference number: 5 (lower is better) Translates to: CVGYVQILCHFISEI*ASTDFGNLRGSGAN Trigger: ATTGGCTCCTGAACCCCTGAGGTTACCAAAATCCGTGGATGCTCAAATCTCTGAAATAAAGTGGCATAGTATTTGCACATAACCTACGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS TCA 90 bp | ATCCACTTATCCAGCTTTTTCACCTTCCCAATTTGCTTCAAATGCTaGAAGACTCTAGAATGCTCAACGCTGAGTTCCTTGGCAACTTCT | + |
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Preference number: 5 (lower is better) Translates to: IHLSSFFTFPICFKC*KTLECSTLSSLATS Trigger: AGAAGTTGCCAAGGAACTCAGCGTTGAGCATTCTAGAGTCTTTCAGCATTTGAAGCAAATTGGGAAGGTGAAAAAGCTGGATAAGTGGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS CCA 90 bp | ATATTCTTTATTCTGGTTGAGTCTGCCAAATTTAGCAACACATGCTaGTTGCTACCCCGGATGGTGATTAGTTCTGTTGTTTATAAAGAC | + |
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Preference number: 5 (lower is better) Translates to: IFFILVESAKFSNTC*LLPRMVISSVVYKD Trigger: GTCTTTATAAACAACAGAACTAATCACCATCCGGGGTAGCAACCAGCATGTGTTGCTAAATTTGGCAGACTCAACCAGAATAAAGAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS TCA 90 bp | CCTGCTTCATTTTATTTAGAAAGAAGTCATTCTCTTCACTATGACTaGACCACCACTTTTAAATACACAGTCAGTCCTCCATATGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: PASFYLERSHSLHYD*TTTFKYTVSPPYVL Trigger: CAGCACATATGGAGGACTGACTGTGTATTTAAAAGTGGTGGTTCAGTCATAGTGAAGAGAATGACTTCTTTCTAAATAAAATGAAGCAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS GCA 90 bp | TTTATATTCTTTATTCTGGTTGAGTCTGCCAAATTTAGCAACACATaGTGGTTGCTACCCCGGATGGTGATTAGTTCTGTTGTTTATAAA | + |
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Preference number: 5 (lower is better) Translates to: FIFFILVESAKFSNT*WLLPRMVISSVVYK Trigger: TTTATAAACAACAGAACTAATCACCATCCGGGGTAGCAACCAGCATGTGTTGCTAAATTTGGCAGACTCAACCAGAATAAAGAATATAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CCA 72 bp | CGGCAGGAGGCCAGGCCGTCCTCTAGCAGGACTAGGTaGAGTTTGGCCTGGGGAAGTCTTAGGAGAGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: RQEARPSSSRTR*SLAWGSLRRAR Trigger: CCTGGCTCTCCTAAGACTTCCCCAGGCCAAACTCCACCTAGTCCTGCTAGAGGACGGCCTGGCCTCCTGCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CAA 72 bp | GAGGCCAGGCCGTCCTCTAGCAGGACTAGGTGGAGTTaGGCCTGGGGAAGTCTTAGGAGAGCCAGGGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: EARPSSSRTRWS*AWGSLRRARGH Trigger: GTGGCCCCTGGCTCTCCTAAGACTTCCCCAGGCCAAACTCCACCTAGTCCTGCTAGAGGACGGCCTGGCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS TCA 72 bp | GTTGAGGGAAGCACACCAATGGAAGAGCACACTGACTaGCGCCGGCAGGAGGCCAGGCCGTCCTCTAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: VEGSTPMEEHTD*RRQEARPSSSR Trigger: CCTGCTAGAGGACGGCCTGGCCTCCTGCCGGCGTCAGTCAGTGTGCTCTTCCATTGGTGTGCTTCCCTCAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CCA 72 bp | AGGCCAGGCCGTCCTCTAGCAGGACTAGGTGGAGTTTaGCCTGGGGAAGTCTTAGGAGAGCCAGGGGCCACT | + |
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Preference number: 6 (lower is better) Translates to: RPGRPLAGLGGV*PGEVLGEPGAT Trigger: AGTGGCCCCTGGCTCTCCTAAGACTTCCCCAGGCCAAACTCCACCTAGTCCTGCTAGAGGACGGCCTGGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS GCA 72 bp | ACCCCCACGGACCTAGGTGAGGACAGGCAGAAATGTTaGATTTACCAAGACCGCTCTGGCCCACCACAACCC | + |
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Preference number: 6 (lower is better) Translates to: TPTDLGEDRQKC*IYQDRSGPPQP Trigger: GGGTTGTGGTGGGCCAGAGCGGTCTTGGTAAATGCAACATTTCTGCCTGTCCTCACCTAGGTCCGTGGGGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CAA 90 bp | GGCGACAAGAAGCCCTTATATGAAATAAGCCCCTCTGCCCTTCCCTaGCTCCTACTGTGTTCCCATAAGCCTTTCGTGTCTTCTCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: GDKKPLYEISPSALP*LLLCSHKPFVSSQP Trigger: AGGCTGAGAAGACACGAAAGGCTTATGGGAACACAGTAGGAGCAAGGGAAGGGCAGAGGGGCTTATTTCATATAAGGGCTTCTTGTCGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452834.5 |
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| CDS TCA 72 bp | GTCGTGGAGAATTGGGCCCTTTCTGTTGACCATTGCTaGCTGCAGGGGTTGAAGTTTTCGGTTCATCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: VVENWALSVDHC*LQGLKFSVHLF Trigger: AAAGAGATGAACCGAAAACTTCAACCCCTGCAGTCAGCAATGGTCAACAGAAAGGGCCCAATTCTCCACGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS TCA 72 bp | GGAAGTGTTTTCCTTGCAAAAAGTTGTCGAGATGATTaGAGAAGTGGTAGTCGGTTGGCGGGAGGTCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: GSVFLAKSCRDD*RSGSRLAGGQV Trigger: CACCTGACCTCCCGCCAACCGACTACCACTTCTTCAATCATCTCGACAACTTTTTGCAAGGAAAACACTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS TCA 72 bp | CCTGAGTGCGTGTGCACACATGCTAAAGGAACAGCGTaGGCCAAGGCACAGAGTCATAGTGAGTACATTTTA | + |
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Preference number: 6 (lower is better) Translates to: PECVCTHAKGTA*AKAQSHSEYIL Trigger: TAAAATGTACTCACTATGACTCTGTGCCTTGGCTCACGCTGTTCCTTTAGCATGTGTGCACACGCACTCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CCA 72 bp | AGCAAACTAAAAGAGTACCCTGTAACACACACCCACTaGGGCTTCAGCTGTAGACACTCACCTCTAGACACT | + |
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Preference number: 6 (lower is better) Translates to: SKLKEYPVTHTH*GFSCRHSPLDT Trigger: AGTGTCTAGAGGTGAGTGTCTACAGCTGAAGCCCCAGTGGGTGTGTGTTACAGGGTACTCTTTTAGTTTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CAA 90 bp | AATTGGCGCCTTGGAATCCTGCATTCCTGTGGTCTGAAATGCTTCTaGATATGCAAGTACAGCAGGAAGATGCAGACACAGAAATGCCTG | + |
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Preference number: 6 (lower is better) Translates to: NWRLGILHSCGLKCF*ICKYSRKMQTQKCL Trigger: CAGGCATTTCTGTGTCTGCATCTTCCTGCTGTACTTGCATATCAAGAAGCATTTCAGACCACAGGAATGCAGGATTCCAAGGCGCCAATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS CCA 72 bp | ATGAATAACAGGGGCTATTACAGAGGATCTAGAGCCTaGCTTCCCATCCTAGCTCAGCGTTTACTGCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: MNNRGYYRGSRA*LPILAQRLLLF Trigger: AAAGAGCAGTAAACGCTGAGCTAGGATGGGAAGCCAGGCTCTAGATCCTCTGTAATAGCCCCTGTTATTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CAA 72 bp | GCCACTTTATTTCAGAGATTTGAGCATCCACGGATTTaGGTAACCTCAGGGGTTCAGGAGCCAATCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: ATLFQRFEHPRI*VTSGVQEPISC Trigger: ACAGGAGATTGGCTCCTGAACCCCTGAGGTTACCAAAATCCGTGGATGCTCAAATCTCTGAAATAAAGTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS TCA 72 bp | TCCCTTGCTCCTACTGTGTTCCCACTGACCTGGAGGTaGAAAGTTCTATATCAAATTACTCACAGCCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: SLAPTVFPLTWR*KVLYQITHSLR Trigger: TCTCAGGCTGTGAGTAATTTGATATAGAACTTTTCACCTCCAGGTCAGTGGGAACACAGTAGGAGCAAGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421931.1 |
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| CDS CAA 72 bp | CTTGGAATCCTGCATTCCTGTGGTCTGAAATGCTTCTaGATATGCAAGTACAGCAGGAAGATGCAGACACAG | + |
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Preference number: 6 (lower is better) Translates to: LGILHSCGLKCF*ICKYSRKMQTQ Trigger: CTGTGTCTGCATCTTCCTGCTGTACTTGCATATCAAGAAGCATTTCAGACCACAGGAATGCAGGATTCCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS CCA 72 bp | ATTCTGGTTGAGTCTGCCAAATTTAGCAACACATGCTaGTTGCTACCCCGGATGGTGATTAGTTCTGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: ILVESAKFSNTC*LLPRMVISSVV Trigger: AACAACAGAACTAATCACCATCCGGGGTAGCAACCAGCATGTGTTGCTAAATTTGGCAGACTCAACCAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CAA 72 bp | CTGGTTGAGTCTGCCAAATTTAGCAACACATGCTGGTaGCTACCCCGGATGGTGATTAGTTCTGTTGTTTAT | + |
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Preference number: 6 (lower is better) Translates to: LVESAKFSNTCW*LPRMVISSVVY Trigger: ATAAACAACAGAACTAATCACCATCCGGGGTAGCAACCAGCATGTGTTGCTAAATTTGGCAGACTCAACCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS TCA 72 bp | TCCAGCTTTTTCACCTTCCCAATTTGCTTCAAATGCTaGAAGACTCTAGAATGCTCAACGCTGAGTTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: SSFFTFPICFKC*KTLECSTLSSL Trigger: CAAGGAACTCAGCGTTGAGCATTCTAGAGTCTTTCAGCATTTGAAGCAAATTGGGAAGGTGAAAAAGCTGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS GCA 72 bp | CTCTCCTCTCCTTTGCAAAACTTCTTGAACCACCACTaGACTGTACATTTGTTAGCAGTTCCTGAACCAAAT | + |
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Preference number: 6 (lower is better) Translates to: LSSPLQNFLNHH*TVHLLAVPEPN Trigger: ATTTGGTTCAGGAACTGCTAACAAATGTACAGTGCAGTGGTGGTTCAAGAAGTTTTGCAAAGGAGAGGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS GCA 72 bp | TTTATTCTGGTTGAGTCTGCCAAATTTAGCAACACATaGTGGTTGCTACCCCGGATGGTGATTAGTTCTGTT | + |
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Preference number: 6 (lower is better) Translates to: FILVESAKFSNT*WLLPRMVISSV Trigger: AACAGAACTAATCACCATCCGGGGTAGCAACCAGCATGTGTTGCTAAATTTGGCAGACTCAACCAGAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CAA 72 bp | TCGTTTTCAAGGCTCTCCTCTCCTTTGCAAAACTTCTaGAACCACCACTGCACTGTACATTTGTTAGCAGTT | + |
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Preference number: 6 (lower is better) Translates to: SFSRLSSPLQNF*NHHCTVHLLAV Trigger: AACTGCTAACAAATGTACAGTGCAGTGGTGGTTCAAGAAGTTTTGCAAAGGAGAGGAGAGCCTTGAAAACGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS GCA 72 bp | GCTTCAGGATTCAGTGAACTCTTGGAAAGCACTTTTTaGATTCTACTGGTTGTGGAAGTGTTTTCCTTGCAA | + |
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Preference number: 6 (lower is better) Translates to: ASGFSELLESTF*ILLVVEVFSLQ Trigger: TTGCAAGGAAAACACTTCCACAACCAGTAGAATGCAAAAAGTGCTTTCCAAGAGTTCACTGAATCCTGAAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS CCA 72 bp | CATCATCTTTTCAAATTCCAAGGTAAATTGGCGCCTTaGAATCCTGCATTCCTGTGGTCTGAAATGCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: HHLFKFQGKLAP*NPAFLWSEMLL Trigger: AAGAAGCATTTCAGACCACAGGAATGCAGGATTCCAAGGCGCCAATTTACCTTGGAATTTGAAAAGATGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS CAA 90 bp | TTCTTTATTCTGGTTGAGTCTGCCAAATTTAGCAACACATGCTGGTaGCTACCCCGGATGGTGATTAGTTCTGTTGTTTATAAAGACAAG | + |
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Preference number: 6 (lower is better) Translates to: FFILVESAKFSNTCW*LPRMVISSVVYKDK Trigger: CTTGTCTTTATAAACAACAGAACTAATCACCATCCGGGGTAGCAACCAGCATGTGTTGCTAAATTTGGCAGACTCAACCAGAATAAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS TCA 72 bp | TATGTGCAAATACTATGCCACTTTATTTCAGAGATTTaGGCATCCACGGATTTTGGTAACCTCAGGGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: YVQILCHFISEI*ASTDFGNLRGS Trigger: TGAACCCCTGAGGTTACCAAAATCCGTGGATGCTCAAATCTCTGAAATAAAGTGGCATAGTATTTGCACATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS CAA 72 bp | AGCATAAAAATCCGTGCTTCAGGATTCAGTGAACTCTaGGAAAGCACTTTTTGCATTCTACTGGTTGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: SIKIRASGFSEL*ESTFCILLVVE Trigger: TTCCACAACCAGTAGAATGCAAAAAGTGCTTTCCAAGAGTTCACTGAATCCTGAAGCACGGATTTTTATGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENST00000421931.1 ENST00000452834.5 ENST00000655348.1 ENST00000659693.1 |
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| CDS CCA 72 bp | TATAGAATTAATCAAGCTAAAATAAGGGCATTAAGGTaGGTCCCAATCCAACATGACTTGTGTCCATGTAAA | + |
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Preference number: 6 (lower is better) Translates to: YRINQAKIRALR*VPIQHDLCPCK Trigger: TTTACATGGACACAAGTCATGTTGGATTGGGACCCACCTTAATGCCCTTATTTTAGCTTGATTAATTCTATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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| CDS TCA 72 bp | TTTTATTTAGAAAGAAGTCATTCTCTTCACTATGACTaGACCACCACTTTTAAATACACAGTCAGTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: FYLERSHSLHYD*TTTFKYTVSPP Trigger: TGGAGGACTGACTGTGTATTTAAAAGTGGTGGTTCAGTCATAGTGAAGAGAATGACTTCTTTCTAAATAAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659693.1 |
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