Pregenerated sensors for LINC01349 (Homo sapiens)

Ensembl gene IDs: ENSG00000230402

Ensembl transcript IDs: ENST00000416343.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	AGTCAGTGTTATGTCTCTTCTGGAGAGACTCGTACATaGGTTGCTGATCCCTGGGCTGAGTTCTCCCAGCCC	+
Preference number: 6 (lower is better) Translates to: SQCYVSSGETRT*VADPWAEFSQP Trigger: GGGCTGGGAGAACTCAGCCCAGGGATCAGCAACGCATGTACGAGTCTCTCCAGAAGAGACATAACACTGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416343.2
CDS CAA 72 bp	AGTGTTATGTCTCTTCTGGAGAGACTCGTACATGCGTaGCTGATCCCTGGGCTGAGTTCTCCCAGCCCTAGT	+
Preference number: 6 (lower is better) Translates to: SVMSLLERLVHA*LIPGLSSPSPS Trigger: ACTAGGGCTGGGAGAACTCAGCCCAGGGATCAGCAACGCATGTACGAGTCTCTCCAGAAGAGACATAACACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416343.2
CDS CAA 90 bp	CATACAGTCAGTGTTATGTCTCTTCTGGAGAGACTCGTACATGCGTaGCTGATCCCTGGGCTGAGTTCTCCCAGCCCTAGTGAACTCGGA	+
Preference number: 6 (lower is better) Translates to: HTVSVMSLLERLVHA*LIPGLSSPSPSELG Trigger: TCCGAGTTCACTAGGGCTGGGAGAACTCAGCCCAGGGATCAGCAACGCATGTACGAGTCTCTCCAGAAGAGACATAACACTGACTGTATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416343.2
CDS CCA 72 bp	TGCAGGGTAAATGAACTCATCTGGGCAGTCCTCATTTaGGGTCTCTCGTGCTGTTGTGGTCATATAGCTGCT	+
Preference number: 6 (lower is better) Translates to: CRVNELIWAVLI*GLSCCCGHIAA Trigger: AGCAGCTATATGACCACAACAGCACGAGAGACCCCAAATGAGGACTGCCCAGATGAGTTCATTTACCCTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416343.2
CDS CAA 90 bp	AGAAGGTTCTGCTTGATGGTTCCCATCAGGGTAAAACTTAGTGGCTaGAGGCAACGCTTCATTAGTATTATCCCTCTTAGTTTTGCAGGG	+
Preference number: 6 (lower is better) Translates to: RRFCLMVPIRVKLSG*RQRFISIIPLSFAG Trigger: CCCTGCAAAACTAAGAGGGATAATACTAATGAAGCGTTGCCTCAAGCCACTAAGTTTTACCCTGATGGGAACCATCAAGCAGAACCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416343.2
CDS TCA 72 bp	TCATTAGTATTATCCCTCTTAGTTTTGCAGGGTAAATaGACTCATCTGGGCAGTCCTCATTTGGGGTCTCTC	+
Preference number: 6 (lower is better) Translates to: SLVLSLLVLQGK*THLGSPHLGSL Trigger: GAGAGACCCCAAATGAGGACTGCCCAGATGAGTTCATTTACCCTGCAAAACTAAGAGGGATAATACTAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416343.2
CDS CAA 72 bp	TGCTTGATGGTTCCCATCAGGGTAAAACTTAGTGGCTaGAGGCAACGCTTCATTAGTATTATCCCTCTTAGT	+
Preference number: 6 (lower is better) Translates to: CLMVPIRVKLSG*RQRFISIIPLS Trigger: ACTAAGAGGGATAATACTAATGAAGCGTTGCCTCAAGCCACTAAGTTTTACCCTGATGGGAACCATCAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416343.2

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