Pregenerated sensors for LINC01338 (Homo sapiens)
Ensembl gene IDs: ENSG00000281327Ensembl transcript IDs: ENST00000627179.2, ENST00000654717.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGAGTCCTGGCATTCCTATGCTTGATCTTCACAGACTGGTCACTCTaGTGCAGATGGTTCTCACACTGGCTTTTGGGAACTGCTGGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: GVLAFLCLIFTDWSL*CRWFSHWLLGTAGL Trigger: CAGACCAGCAGTTCCCAAAAGCCAGTGTGAGAACCATCTGCATCAGAGTGACCAGTCTGTGAAGATCAAGCATAGGAATGCCAGGACTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627179.2 |
||
| CDS TCA 90 bp | AGGCCTCACACCAATCATAGTTGTCAGGGGAATGTAAAATGGGTTTaGCCGTCGATGTCCAATATAGTGGCCATTAGCCATACTGAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: RPHTNHSCQGNVKWV*PSMSNIVAISHTEP Trigger: GGGCTCAGTATGGCTAATGGCCACTATATTGGACATCGACGGTCAAACCCATTTTACATTCCCCTGACAACTATGATTGGTGTGAGGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS GCA 90 bp | CAGGGGCCCAGAGGTAACCCTACTCCTTTCTGGGAATTAATGGTCTaGTTATTCTTCATTCTCCATGTCCTTCCCCACCTAGATTGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: QGPRGNPTPFWELMV*LFFILHVLPHLDCE Trigger: TTCACAATCTAGGTGGGGAAGGACATGGAGAATGAAGAATAAGCAGACCATTAATTCCCAGAAAGGAGTAGGGTTACCTCTGGGCCCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS GCA 90 bp | GTGGGGGTGTGTTCATCAGTGTCAGAGCATGACAACATGTCAGCTTaGACATTGTATATAGCTGGCACTCTTTTAGCTGGAAGCAACACA | + |
|
Preference number: 5 (lower is better) Translates to: VGVCSSVSEHDNMSA*TLYIAGTLLAGSNT Trigger: TGTGTTGCTTCCAGCTAAAAGAGTGCCAGCTATATACAATGTGCAAGCTGACATGTTGTCATGCTCTGACACTGATGAACACACCCCCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS CCA 90 bp | AAGATGATCTTTGCCAACAGGAAAGATCTTTGCTGTCAGCCTAGTTaGGCCATCATAGGCCTCACACCAATCATAGTTGTCAGGGGAATG | + |
|
Preference number: 5 (lower is better) Translates to: KMIFANRKDLCCQPS*AIIGLTPIIVVRGM Trigger: CATTCCCCTGACAACTATGATTGGTGTGAGGCCTATGATGGCCCAACTAGGCTGACAGCAAAGATCTTTCCTGTTGGCAAAGATCATCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS GCA 90 bp | CAGCCCAGTATTGTCACCAAACCCCTAGGATTTTTCTCTCCATCCTaGTCATTTCAATGTCAGTTTCATCCAAAGTCTGGTTCTCCTCAT | + |
|
Preference number: 5 (lower is better) Translates to: QPSIVTKPLGFFSPS*SFQCQFHPKSGSPH Trigger: ATGAGGAGAACCAGACTTTGGATGAAACTGACATTGAAATGAGCAGGATGGAGAGAAAAATCCTAGGGGTTTGGTGACAATACTGGGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS TCA 90 bp | GCACTAGGTGGGAAACATAGAACCACACTCTTGAAGGTATCTCTTTaGGAGCCACTTGCTTTATTGAAAAGCTTTGCCTTCAGCTTTGTA | + |
|
Preference number: 5 (lower is better) Translates to: ALGGKHRTTLLKVSL*EPLALLKSFAFSFV Trigger: TACAAAGCTGAAGGCAAAGCTTTTCAATAAAGCAAGTGGCTCTCAAAGAGATACCTTCAAGAGTGTGGTTCTATGTTTCCCACCTAGTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS TCA 90 bp | GGTCTGCTTATTCTTCATTCTCCATGTCCTTCCCCACCTAGATTGTaGACATCTCAATGGGTAGAACTCTGCTGTCTTAATCATACTAGA | + |
|
Preference number: 5 (lower is better) Translates to: GLLILHSPCPSPPRL*TSQWVELCCLNHTR Trigger: TCTAGTATGATTAAGACAGCAGAGTTCTACCCATTGAGATGTTCACAATCTAGGTGGGGAAGGACATGGAGAATGAAGAATAAGCAGACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS TCA 90 bp | GTTTGTTCTTCTCAGATCAGGCTTAGTTCTTGGTGCCTCTCAACATaGAGTTGTTTCAAAATGTGGCCTTTTGGTGTGATATGTTCCCTA | + |
|
Preference number: 5 (lower is better) Translates to: VCSSQIRLSSWCLST*SCFKMWPFGVICSL Trigger: TAGGGAACATATCACACCAAAAGGCCACATTTTGAAACAACTTCATGTTGAGAGGCACCAAGAACTAAGCCTGATCTGAGAAGAACAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CCA 90 bp | GCAGATGAGGACGCAAACCCAATAGTTGGGCCTCCGTTTCTTGAATaGTTTTATATTTCCGGACTGCAAACAAATGATTATATGTGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: ADEDANPIVGPPFLE*FYISGLQTNDYMCE Trigger: TTCACACATATAATCATTTGTTTGCAGTCCGGAAATATAAAACCATTCAAGAAACGGAGGCCCAACTATTGGGTTTGCGTCCTCATCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627179.2 |
||
| CDS CCA 90 bp | GATTTGACAACTTGTCAGCATCATACATTTGGTAAGAGTAGAGCTTaGGTTTCAAACCCAGACAGTCTGGCTCTGAAGTCTGAACTTATT | + |
|
Preference number: 5 (lower is better) Translates to: DLTTCQHHTFGKSRA*VSNPDSLALKSELI Trigger: AATAAGTTCAGACTTCAGAGCCAGACTGTCTGGGTTTGAAACCCAAGCTCTACTCTTACCAAATGTATGATGCTGACAAGTTGTCAAATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CCA 90 bp | TTTAACATTGAAGGAAAAATTGACAGTGCTAGACATATTGAGAGGTaGGCTGTGGGTCTCCAAAAATGTTGCTTCCTAAGGACTTTCAAG | + |
|
Preference number: 5 (lower is better) Translates to: FNIEGKIDSARHIER*AVGLQKCCFLRTFK Trigger: CTTGAAAGTCCTTAGGAAGCAACATTTTTGGAGACCCACAGCCCACCTCTCAATATGTCTAGCACTGTCAATTTTTCCTTCAATGTTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CCA 90 bp | TTCTTGGTGCCTCTCAACATGAAGTTGTTTCAAAATGTGGCCTTTTaGTGTGATATGTTCCCTACAGGCAAACCTGCTATACTACTTAAT | + |
|
Preference number: 5 (lower is better) Translates to: FLVPLNMKLFQNVAF*CDMFPTGKPAILLN Trigger: ATTAAGTAGTATAGCAGGTTTGCCTGTAGGGAACATATCACACCAAAAGGCCACATTTTGAAACAACTTCATGTTGAGAGGCACCAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS GCA 90 bp | AGTGCTAGACATATTGAGAGGTGGGCTGTGGGTCTCCAAAAATGTTaGTTCCTAAGGACTTTCAAGAACCAGTTATGTTTAAATTCATTT | + |
|
Preference number: 5 (lower is better) Translates to: SARHIERWAVGLQKC*FLRTFKNQLCLNSF Trigger: AAATGAATTTAAACATAACTGGTTCTTGAAAGTCCTTAGGAAGCAACATTTTTGGAGACCCACAGCCCACCTCTCAATATGTCTAGCACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CCA 90 bp | GGTAGAATAATCGGGAAGCCAATAGTTGGGCCTCCGTTTCTTGAATaGTTTTATATTTCCGGACTGCAAACAAATGATTATATGTGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: GRIIGKPIVGPPFLE*FYISGLQTNDYMCE Trigger: TTCACACATATAATCATTTGTTTGCAGTCCGGAAATATAAAACCATTCAAGAAACGGAGGCCCAACTATTGGCTTCCCGATTATTCTACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS TCA 90 bp | GAACTTTTCATTTTAATTATGAAGGAACTGAGGAACACAGAGATTTaGCAACTTGTCAGCATCATACATTTGGTAAGAGTAGAGCTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: ELFILIMKELRNTEI*QLVSIIHLVRVELG Trigger: CCCAAGCTCTACTCTTACCAAATGTATGATGCTGACAAGTTGTCAAATCTCTGTGTTCCTCAGTTCCTTCATAATTAAAATGAAAAGTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CAA 90 bp | GGGGCTCTGGTGTTCTCTTGGAGCTCTCTGCACCGGGTAAATCCTTaGAGTGTAGGCTTGCTGACAGCCGTCTCATTCACACGCAGGTTC | + |
|
Preference number: 6 (lower is better) Translates to: GALVFSWSSLHRVNP*SVGLLTAVSFTRRF Trigger: GAACCTGCGTGTGAATGAGACGGCTGTCAGCAAGCCTACACTCAAAGGATTTACCCGGTGCAGAGAGCTCCAAGAGAACACCAGAGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CAA 72 bp | AGCTCTCTGCACCGGGTAAATCCTTTGAGTGTAGGCTaGCTGACAGCCGTCTCATTCACACGCAGGTTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: SSLHRVNPLSVG*LTAVSFTRRFL Trigger: GAGGAACCTGCGTGTGAATGAGACGGCTGTCAGCAAGCCTACACTCAAAGGATTTACCCGGTGCAGAGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS TCA 72 bp | ACTGGCTTTTGGGAACTGCTGGTCTGGAAAGGCAGATaGGGACGCAAACCCAATAGTTGGGCCTCCGTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: TGFWELLVWKGR*GRKPNSWASVS Trigger: AGAAACGGAGGCCCAACTATTGGGTTTGCGTCCTCATCTGCCTTTCCAGACCAGCAGTTCCCAAAAGCCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627179.2 |
||
| CDS GCA 72 bp | CTGATGCAGATGGTTCTCACACTGGCTTTTGGGAACTaGTGGTCTGGAAAGGCAGATGAGGACGCAAACCCA | + |
|
Preference number: 6 (lower is better) Translates to: LMQMVLTLAFGN*WSGKADEDANP Trigger: TGGGTTTGCGTCCTCATCTGCCTTTCCAGACCAGCAGTTCCCAAAAGCCAGTGTGAGAACCATCTGCATCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627179.2 |
||
| CDS CAA 72 bp | CAAGTGAACCAGAATACCAGGGGCTCTGGTGTTCTCTaGGAGCTCTCTGCACCGGGTAAATCCTTTGAGTGT | + |
|
Preference number: 6 (lower is better) Translates to: QVNQNTRGSGVL*ELSAPGKSFEC Trigger: ACACTCAAAGGATTTACCCGGTGCAGAGAGCTCCAAGAGAACACCAGAGCCCCTGGTATTCTGGTTCACTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS CAA 72 bp | GTGTTCTCTTGGAGCTCTCTGCACCGGGTAAATCCTTaGAGTGTAGGCTTGCTGACAGCCGTCTCATTCACA | + |
|
Preference number: 6 (lower is better) Translates to: VFSWSSLHRVNP*SVGLLTAVSFT Trigger: TGTGAATGAGACGGCTGTCAGCAAGCCTACACTCAAAGGATTTACCCGGTGCAGAGAGCTCCAAGAGAACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CAA 90 bp | GGACAAATTCAAGTGAACCAGAATACCAGGGGCTCTGGTGTTCTCTaGGAGCTCTCTGCACCGGGTAAATCCTTTGAGTGTAGGCTTGCT | + |
|
Preference number: 6 (lower is better) Translates to: GQIQVNQNTRGSGVL*ELSAPGKSFECRLA Trigger: AGCAAGCCTACACTCAAAGGATTTACCCGGTGCAGAGAGCTCCAAGAGAACACCAGAGCCCCTGGTATTCTGGTTCACTTGAATTTGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS TCA 72 bp | AGGACATGTAGGGTGGAGTCCTGGCATTCCTATGCTTaGTCTTCACAGACTGGTCACTCTGATGCAGATGGT | + |
|
Preference number: 6 (lower is better) Translates to: RTCRVESWHSYA*SSQTGHSDADG Trigger: ACCATCTGCATCAGAGTGACCAGTCTGTGAAGATCAAGCATAGGAATGCCAGGACTCCACCCTACATGTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627179.2 |
||
| CDS CCA 72 bp | CCTCCGCAGGGGCCCAGAGGTAACCCTACTCCTTTCTaGGAATTAATGGTCTGCTTATTCTTCATTCTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: PPQGPRGNPTPF*ELMVCLFFILH Trigger: ATGGAGAATGAAGAATAAGCAGACCATTAATTCCCAGAAAGGAGTAGGGTTACCTCTGGGCCCCTGCGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS TCA 72 bp | GCATTCCTATGCTTGATCTTCACAGACTGGTCACTCTaGTGCAGATGGTTCTCACACTGGCTTTTGGGAACT | + |
|
Preference number: 6 (lower is better) Translates to: AFLCLIFTDWSL*CRWFSHWLLGT Trigger: AGTTCCCAAAAGCCAGTGTGAGAACCATCTGCATCAGAGTGACCAGTCTGTGAAGATCAAGCATAGGAATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627179.2 |
||
| CDS CCA 72 bp | TTTGCCAACAGGAAAGATCTTTGCTGTCAGCCTAGTTaGGCCATCATAGGCCTCACACCAATCATAGTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: FANRKDLCCQPS*AIIGLTPIIVV Trigger: GACAACTATGATTGGTGTGAGGCCTATGATGGCCCAACTAGGCTGACAGCAAAGATCTTTCCTGTTGGCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS TCA 72 bp | CAGAATCCTCAGATGTTTATCTCCAGGGGCCGTAAGTaGCCTAAAGCAATTTTTGGAAGCAGTGATAGTGCC | + |
|
Preference number: 6 (lower is better) Translates to: QNPQMFISRGRK*PKAIFGSSDSA Trigger: GGCACTATCACTGCTTCCAAAAATTGCTTTAGGTCACTTACGGCCCCTGGAGATAAACATCTGAGGATTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS CCA 72 bp | GAAGGAAAAATTGACAGTGCTAGACATATTGAGAGGTaGGCTGTGGGTCTCCAAAAATGTTGCTTCCTAAGG | + |
|
Preference number: 6 (lower is better) Translates to: EGKIDSARHIER*AVGLQKCCFLR Trigger: CCTTAGGAAGCAACATTTTTGGAGACCCACAGCCCACCTCTCAATATGTCTAGCACTGTCAATTTTTCCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CAA 90 bp | AAGGGTGTTTTCTCTGAGACAGAGTTTTTCACCTCAGGGCAATCTTaGCTTCTTTGTGAAACCAAACCTGCTAATTGGTATCCTCCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: KGVFSETEFFTSGQS*LLCETKPANWYPPL Trigger: CAGAGGAGGATACCAATTAGCAGGTTTGGTTTCACAAAGAAGCAAAGATTGCCCTGAGGTGAAAAACTCTGTCTCAGAGAAAACACCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS TCA 72 bp | ACCAATCATAGTTGTCAGGGGAATGTAAAATGGGTTTaGCCGTCGATGTCCAATATAGTGGCCATTAGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: TNHSCQGNVKWV*PSMSNIVAISH Trigger: ATGGCTAATGGCCACTATATTGGACATCGACGGTCAAACCCATTTTACATTCCCCTGACAACTATGATTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS TCA 72 bp | TTTCACTCTTACAAGCCTCAGGTAATTATGCTGTCCTaGAAACACCCATTAAGGACCTTATGCAGAATCCTC | + |
|
Preference number: 6 (lower is better) Translates to: FHSYKPQVIMLS*KHPLRTLCRIL Trigger: GAGGATTCTGCATAAGGTCCTTAATGGGTGTTTTCAGGACAGCATAATTACCTGAGGCTTGTAAGAGTGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS TCA 72 bp | ATTCTTCATTCTCCATGTCCTTCCCCACCTAGATTGTaGACATCTCAATGGGTAGAACTCTGCTGTCTTAAT | + |
|
Preference number: 6 (lower is better) Translates to: ILHSPCPSPPRL*TSQWVELCCLN Trigger: ATTAAGACAGCAGAGTTCTACCCATTGAGATGTTCACAATCTAGGTGGGGAAGGACATGGAGAATGAAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS GCA 72 bp | ATTGTCACCAAACCCCTAGGATTTTTCTCTCCATCCTaGTCATTTCAATGTCAGTTTCATCCAAAGTCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: IVTKPLGFFSPS*SFQCQFHPKSG Trigger: ACCAGACTTTGGATGAAACTGACATTGAAATGAGCAGGATGGAGAGAAAAATCCTAGGGGTTTGGTGACAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS CCA 72 bp | GGAAGCAGTGATAGTGCCATTAAAACTAGTAGAAAGTaGTCACTCTCTTTTCTGCATGTGGTAAGCTTACTG | + |
|
Preference number: 6 (lower is better) Translates to: GSSDSAIKTSRK*SLSFLHVVSLL Trigger: CAGTAAGCTTACCACATGCAGAAAAGAGAGTGACCACTTTCTACTAGTTTTAATGGCACTATCACTGCTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS CCA 72 bp | CCTCTCAACATGAAGTTGTTTCAAAATGTGGCCTTTTaGTGTGATATGTTCCCTACAGGCAAACCTGCTATA | + |
|
Preference number: 6 (lower is better) Translates to: PLNMKLFQNVAF*CDMFPTGKPAI Trigger: TATAGCAGGTTTGCCTGTAGGGAACATATCACACCAAAAGGCCACATTTTGAAACAACTTCATGTTGAGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS TCA 72 bp | CAACATGAAGTTGTTTCAAAATGTGGCCTTTTGGTGTaGTATGTTCCCTACAGGCAAACCTGCTATACTACT | + |
|
Preference number: 6 (lower is better) Translates to: QHEVVSKCGLLV*YVPYRQTCYTT Trigger: AGTAGTATAGCAGGTTTGCCTGTAGGGAACATATCACACCAAAAGGCCACATTTTGAAACAACTTCATGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CCA 72 bp | GACGCAAACCCAATAGTTGGGCCTCCGTTTCTTGAATaGTTTTATATTTCCGGACTGCAAACAAATGATTAT | + |
|
Preference number: 6 (lower is better) Translates to: DANPIVGPPFLE*FYISGLQTNDY Trigger: ATAATCATTTGTTTGCAGTCCGGAAATATAAAACCATTCAAGAAACGGAGGCCCAACTATTGGGTTTGCGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627179.2 |
||
| CDS CCA 72 bp | ATCGGGAAGCCAATAGTTGGGCCTCCGTTTCTTGAATaGTTTTATATTTCCGGACTGCAAACAAATGATTAT | + |
|
Preference number: 6 (lower is better) Translates to: IGKPIVGPPFLE*FYISGLQTNDY Trigger: ATAATCATTTGTTTGCAGTCCGGAAATATAAAACCATTCAAGAAACGGAGGCCCAACTATTGGCTTCCCGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CAA 72 bp | TTCTCTGAGACAGAGTTTTTCACCTCAGGGCAATCTTaGCTTCTTTGTGAAACCAAACCTGCTAATTGGTAT | + |
|
Preference number: 6 (lower is better) Translates to: FSETEFFTSGQS*LLCETKPANWY Trigger: ATACCAATTAGCAGGTTTGGTTTCACAAAGAAGCAAAGATTGCCCTGAGGTGAAAAACTCTGTCTCAGAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000627179.2 ENST00000654717.1 |
||
| CDS CAA 90 bp | TTCAATCCGAGAAACCAACAATTTGTTTTAACATTGAAGGAAAAATaGACAGTGCTAGACATATTGAGAGGTGGGCTGTGGGTCTCCAAA | + |
|
Preference number: 6 (lower is better) Translates to: FNPRNQQFVLTLKEK*TVLDILRGGLWVSK Trigger: TTTGGAGACCCACAGCCCACCTCTCAATATGTCTAGCACTGTCAATTTTTCCTTCAATGTTAAAACAAATTGTTGGTTTCTCGGATTGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||
| CDS CAA 72 bp | CATTTTAATTATGAAGGAACTGAGGAACACAGAGATTaGACAACTTGTCAGCATCATACATTTGGTAAGAGT | + |
|
Preference number: 6 (lower is better) Translates to: HFNYEGTEEHRD*TTCQHHTFGKS Trigger: ACTCTTACCAAATGTATGATGCTGACAAGTTGTCAAATCTCTGTGTTCCTCAGTTCCTTCATAATTAAAATG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654717.1 |
||