Pregenerated sensors for LINC01283 (Homo sapiens)
Ensembl gene IDs: ENSG00000234191Ensembl transcript IDs: ENST00000438867.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCAGATTCTCCAGGCAGGAGGCAGTTGCTGGTCTCTGCTGGAGAATaGTCCCAGCCTCCTAGGGACAGCTCAGTCTATCCCTGGAATTCC | + |
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Preference number: 5 (lower is better) Translates to: PDSPGRRQLLVSAGE*SQPPRDSSVYPWNS Trigger: GGAATTCCAGGGATAGACTGAGCTGTCCCTAGGAGGCTGGGAGCATTCTCCAGCAGAGACCAGCAACTGCCTCCTGCCTGGAGAATCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CCA 90 bp | GTTGGTGGCAGAGGTGTTGTGGGAAGTGGAACAGTTCCACGTGGCTaGGGAAGCCTCAGAATCACGGCGGGAGGTGAAAGGCTCTTCTTA | + |
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Preference number: 5 (lower is better) Translates to: VGGRGVVGSGTVPRG*GSLRITAGGERLFL Trigger: TAAGAAGAGCCTTTCACCTCCCGCCGTGATTCTGAGGCTTCCCCAGCCACGTGGAACTGTTCCACTTCCCACAACACCTCTGCCACCAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS TCA 90 bp | AGGTTGAGCAGGTCCATAGGTTTCTGCAGCACAGGATCAAGCCTCTaGAGAGGGTTGCCAGGTGCCCCTTCTGGCAGGCTCTATTGCACA | + |
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Preference number: 5 (lower is better) Translates to: RLSRSIGFCSTGSSL*RGLPGAPSGRLYCT Trigger: TGTGCAATAGAGCCTGCCAGAAGGGGCACCTGGCAACCCTCTTCAGAGGCTTGATCCTGTGCTGCAGAAACCTATGGACCTGCTCAACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CCA 90 bp | GCTGGAGAATGCTCCCAGCCTCCTAGGGACAGCTCAGTCTATCCCTaGAATTCCAGTGCACAGGTTGAGCAGGTCCATAGGTTTCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: AGECSQPPRDSSVYP*NSSAQVEQVHRFLQ Trigger: CTGCAGAAACCTATGGACCTGCTCAACCTGTGCACTGGAATTCCAGGGATAGACTGAGCTGTCCCTAGGAGGCTGGGAGCATTCTCCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CCA 90 bp | ACACTTCTCCTGAAGACCCTCAATTGGTTGGTGGCAGAGGTGTTGTaGGAAGTGGAACAGTTCCACGTGGCTGGGGAAGCCTCAGAATCA | + |
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Preference number: 5 (lower is better) Translates to: TLLLKTLNWLVAEVL*EVEQFHVAGEASES Trigger: TGATTCTGAGGCTTCCCCAGCCACGTGGAACTGTTCCACTTCCCACAACACCTCTGCCACCAACCAATTGAGGGTCTTCAGGAGAAGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CCA 90 bp | GGCTCTATTGCACAGATAAGAACACTTCTCCTGAAGACCCTCAATTaGTTGGTGGCAGAGGTGTTGTGGGAAGTGGAACAGTTCCACGTG | + |
|
Preference number: 5 (lower is better) Translates to: GSIAQIRTLLLKTLN*LVAEVLWEVEQFHV Trigger: CACGTGGAACTGTTCCACTTCCCACAACACCTCTGCCACCAACCAATTGAGGGTCTTCAGGAGAAGTGTTCTTATCTGTGCAATAGAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CCA 90 bp | CTCTCTCTCTCTTCTCTTCTCTTTCTCTCTCTCTTCTTCCTTCCCTaGAAGCATGGGTTCAGCCCTCTTTTCCTATGTTTACAGTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: LSLSSLLFLSLFFLP*KHGFSPLFLCLQFS Trigger: GGAGAACTGTAAACATAGGAAAAGAGGGCTGAACCCATGCTTCCAGGGAAGGAAGAAGAGAGAGAGAAAGAGAAGAGAAGAGAGAGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS TCA 90 bp | GGAAGCATGGGTTCAGCCCTCTTTTCCTATGTTTACAGTTCTCCTTaGTTGTCATTTGGACTTGGTTCATTCAATGCAGATGACCATTTA | + |
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Preference number: 5 (lower is better) Translates to: GSMGSALFSYVYSSP*LSFGLGSFNADDHL Trigger: TAAATGGTCATCTGCATTGAATGAACCAAGTCCAAATGACAATCAAGGAGAACTGTAAACATAGGAAAAGAGGGCTGAACCCATGCTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CCA 72 bp | AGAGGTGTTGTGGGAAGTGGAACAGTTCCACGTGGCTaGGGAAGCCTCAGAATCACGGCGGGAGGTGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: RGVVGSGTVPRG*GSLRITAGGER Trigger: CCTTTCACCTCCCGCCGTGATTCTGAGGCTTCCCCAGCCACGTGGAACTGTTCCACTTCCCACAACACCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS GCA 72 bp | GTTTCTGCAGCACAGGATCAAGCCTCTGAAGAGGGTTaGCAGGTGCCCCTTCTGGCAGGCTCTATTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: VSAAQDQASEEG*QVPLLAGSIAQ Trigger: CTGTGCAATAGAGCCTGCCAGAAGGGGCACCTGGCAACCCTCTTCAGAGGCTTGATCCTGTGCTGCAGAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CCA 72 bp | TGCTCCCAGCCTCCTAGGGACAGCTCAGTCTATCCCTaGAATTCCAGTGCACAGGTTGAGCAGGTCCATAGG | + |
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Preference number: 6 (lower is better) Translates to: CSQPPRDSSVYP*NSSAQVEQVHR Trigger: CCTATGGACCTGCTCAACCTGTGCACTGGAATTCCAGGGATAGACTGAGCTGTCCCTAGGAGGCTGGGAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CAA 90 bp | AGAACACTTCTCCTGAAGACCCTCAATTGGTTGGTGGCAGAGGTGTaGTGGGAAGTGGAACAGTTCCACGTGGCTGGGGAAGCCTCAGAA | + |
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Preference number: 6 (lower is better) Translates to: RTLLLKTLNWLVAEV*WEVEQFHVAGEASE Trigger: TTCTGAGGCTTCCCCAGCCACGTGGAACTGTTCCACTTCCCACAACACCTCTGCCACCAACCAATTGAGGGTCTTCAGGAGAAGTGTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CAA 72 bp | ACAGCTCAGTCTATCCCTGGAATTCCAGTGCACAGGTaGAGCAGGTCCATAGGTTTCTGCAGCACAGGATCA | + |
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Preference number: 6 (lower is better) Translates to: TAQSIPGIPVHR*SRSIGFCSTGS Trigger: TGATCCTGTGCTGCAGAAACCTATGGACCTGCTCAACCTGTGCACTGGAATTCCAGGGATAGACTGAGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CAA 90 bp | TCTATTGCACAGATAAGAACACTTCTCCTGAAGACCCTCAATTGGTaGGTGGCAGAGGTGTTGTGGGAAGTGGAACAGTTCCACGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: SIAQIRTLLLKTLNW*VAEVLWEVEQFHVA Trigger: AGCCACGTGGAACTGTTCCACTTCCCACAACACCTCTGCCACCAACCAATTGAGGGTCTTCAGGAGAAGTGTTCTTATCTGTGCAATAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CAA 90 bp | AGGCTCTATTGCACAGATAAGAACACTTCTCCTGAAGACCCTCAATaGGTTGGTGGCAGAGGTGTTGTGGGAAGTGGAACAGTTCCACGT | + |
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Preference number: 6 (lower is better) Translates to: RLYCTDKNTSPEDPQ*VGGRGVVGSGTVPR Trigger: ACGTGGAACTGTTCCACTTCCCACAACACCTCTGCCACCAACCAATTGAGGGTCTTCAGGAGAAGTGTTCTTATCTGTGCAATAGAGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CAA 72 bp | TGCACAGATAAGAACACTTCTCCTGAAGACCCTCAATaGGTTGGTGGCAGAGGTGTTGTGGGAAGTGGAACA | + |
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Preference number: 6 (lower is better) Translates to: CTDKNTSPEDPQ*VGGRGVVGSGT Trigger: TGTTCCACTTCCCACAACACCTCTGCCACCAACCAATTGAGGGTCTTCAGGAGAAGTGTTCTTATCTGTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS TCA 72 bp | GGTTCAGCCCTCTTTTCCTATGTTTACAGTTCTCCTTaGTTGTCATTTGGACTTGGTTCATTCAATGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: GSALFSYVYSSP*LSFGLGSFNAD Trigger: ATCTGCATTGAATGAACCAAGTCCAAATGACAATCAAGGAGAACTGTAAACATAGGAAAAGAGGGCTGAACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CAA 90 bp | CCCTCTTTTCCTATGTTTACAGTTCTCCTTGATTGTCATTTGGACTaGGTTCATTCAATGCAGATGACCATTTATAAATATCTGCATTCC | + |
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Preference number: 6 (lower is better) Translates to: PSFPMFTVLLDCHLD*VHSMQMTIYKYLHS Trigger: GGAATGCAGATATTTATAAATGGTCATCTGCATTGAATGAACCAAGTCCAAATGACAATCAAGGAGAACTGTAAACATAGGAAAAGAGGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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| CDS CAA 90 bp | GTTCAGCCCTCTTTTCCTATGTTTACAGTTCTCCTTGATTGTCATTaGGACTTGGTTCATTCAATGCAGATGACCATTTATAAATATCTG | + |
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Preference number: 6 (lower is better) Translates to: VQPSFPMFTVLLDCH*DLVHSMQMTIYKYL Trigger: CAGATATTTATAAATGGTCATCTGCATTGAATGAACCAAGTCCAAATGACAATCAAGGAGAACTGTAAACATAGGAAAAGAGGGCTGAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438867.1 |
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