Pregenerated sensors for LINC01109 (Homo sapiens)
Ensembl gene IDs: ENSG00000271167Ensembl transcript IDs: ENST00000603837.1
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGCTTGGTGGCAGAGCTCTGCAAGTGTCCAACAGCAGGCATTCCATaGAGCCGTGCACTGGCGTGGAGTGCCAGCCAGCGTCTGATAAAG | + |
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Preference number: 5 (lower is better) Translates to: CLVAELCKCPTAGIP*SRALAWSASQRLIK Trigger: CTTTATCAGACGCTGGCTGGCACTCCACGCCAGTGCACGGCTCCATGGAATGCCTGCTGTTGGACACTTGCAGAGCTCTGCCACCAAGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 90 bp | GGCAGAGCTCTGCAAGTGTCCAACAGCAGGCATTCCATGGAGCCGTaGACTGGCGTGGAGTGCCAGCCAGCGTCTGATAAAGAAAACGAA | + |
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Preference number: 5 (lower is better) Translates to: GRALQVSNSRHSMEP*TGVECQPASDKENE Trigger: TTCGTTTTCTTTATCAGACGCTGGCTGGCACTCCACGCCAGTGCACGGCTCCATGGAATGCCTGCTGTTGGACACTTGCAGAGCTCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CCA 90 bp | GATCCTGGAGTAGTCCCCCGATTTCCAATGCAGGAGGTTGCTTGGTaGCAGAGCTCTGCAAGTGTCCAACAGCAGGCATTCCATGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: DPGVVPRFPMQEVAW*QSSASVQQQAFHGA Trigger: GGCTCCATGGAATGCCTGCTGTTGGACACTTGCAGAGCTCTGCCACCAAGCAACCTCCTGCATTGGAAATCGGGGGACTACTCCAGGATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 90 bp | CGCATAAGATCCTGGAGTAGTCCCCCGATTTCCAATGCAGGAGGTTaGTTGGTGGCAGAGCTCTGCAAGTGTCCAACAGCAGGCATTCCA | + |
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Preference number: 5 (lower is better) Translates to: RIRSWSSPPISNAGG*LVAELCKCPTAGIP Trigger: TGGAATGCCTGCTGTTGGACACTTGCAGAGCTCTGCCACCAAGCAACCTCCTGCATTGGAAATCGGGGGACTACTCCAGGATCTTATGCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 90 bp | TGCTTACCATTTTCTTCCCATGGCACTGAAGTGGAATATCCCAAGTaGCACCGAACTCAGAGAACTCCACGCCGGAATGGGGGTGAGACT | + |
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Preference number: 5 (lower is better) Translates to: CLPFSSHGTEVEYPK*HRTQRTPRRNGGET Trigger: AGTCTCACCCCCATTCCGGCGTGGAGTTCTCTGAGTTCGGTGGCACTTGGGATATTCCACTTCAGTGCCATGGGAAGAAAATGGTAAGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CCA 90 bp | TATTCACTTTTCTGCAGCTTCAAACAGCAAGCACGCATAAGATCCTaGAGTAGTCCCCCGATTTCCAATGCAGGAGGTTGCTTGGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: YSLFCSFKQQARIRS*SSPPISNAGGCLVA Trigger: TGCCACCAAGCAACCTCCTGCATTGGAAATCGGGGGACTACTCCAGGATCTTATGCGTGCTTGCTGTTTGAAGCTGCAGAAAAGTGAATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 90 bp | GCCACAATTTACCATGGAAGCCTCTACTTAATATTCCGCTTGATCTaGCAAGTTTATAGCCTGGCAAATCTGAATACAAATGTCGATGCA | + |
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Preference number: 5 (lower is better) Translates to: ATIYHGSLYLIFRLI*QVYSLANLNTNVDA Trigger: TGCATCGACATTTGTATTCAGATTTGCCAGGCTATAAACTTGGCAGATCAAGCGGAATATTAAGTAGAGGCTTCCATGGTAAATTGTGGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 90 bp | CCAAATCTTACAAGAAATCAATACTTAATTGATTATTCACTTTTCTaGAGCTTCAAACAGCAAGCACGCATAAGATCCTGGAGTAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: PNLTRNQYLIDYSLF*SFKQQARIRSWSSP Trigger: GGGACTACTCCAGGATCTTATGCGTGCTTGCTGTTTGAAGCTGCAGAAAAGTGAATAATCAATTAAGTATTGATTTCTTGTAAGATTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 90 bp | TCACAACACTTTAGCATCATTCATTTATTGTTTACCATAACCCATTaGACACAAAGGTTGCAAAACCTCCAAGTTAGAGGAAATCCTGAG | + |
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Preference number: 5 (lower is better) Translates to: SQHFSIIHLLFTITH*TQRLQNLQVRGNPE Trigger: CTCAGGATTTCCTCTAACTTGGAGGTTTTGCAACCTTTGTGTGCAATGGGTTATGGTAAACAATAAATGAATGATGCTAAAGTGTTGTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CCA 72 bp | GCAGAGCTCTGCAAGTGTCCAACAGCAGGCATTCCATaGAGCCGTGCACTGGCGTGGAGTGCCAGCCAGCGT | + |
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Preference number: 6 (lower is better) Translates to: AELCKCPTAGIP*SRALAWSASQR Trigger: ACGCTGGCTGGCACTCCACGCCAGTGCACGGCTCCATGGAATGCCTGCTGTTGGACACTTGCAGAGCTCTGC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 72 bp | CTGCAAGTGTCCAACAGCAGGCATTCCATGGAGCCGTaGACTGGCGTGGAGTGCCAGCCAGCGTCTGATAAA | + |
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Preference number: 6 (lower is better) Translates to: LQVSNSRHSMEP*TGVECQPASDK Trigger: TTTATCAGACGCTGGCTGGCACTCCACGCCAGTGCACGGCTCCATGGAATGCCTGCTGTTGGACACTTGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CCA 72 bp | GGAGTAGTCCCCCGATTTCCAATGCAGGAGGTTGCTTaGTGGCAGAGCTCTGCAAGTGTCCAACAGCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: GVVPRFPMQEVA*WQSSASVQQQA Trigger: TGCCTGCTGTTGGACACTTGCAGAGCTCTGCCACCAAGCAACCTCCTGCATTGGAAATCGGGGGACTACTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 72 bp | AGAGAACTCCACGCCGGAATGGGGGTGAGACTGGTGTaGTACCTCTGGCATAGGATAAGGATGGCAGGCACG | + |
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Preference number: 6 (lower is better) Translates to: RELHAGMGVRLV*YLWHRIRMAGT Trigger: CGTGCCTGCCATCCTTATCCTATGCCAGAGGTACAACACCAGTCTCACCCCCATTCCGGCGTGGAGTTCTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 72 bp | TCCTGGAGTAGTCCCCCGATTTCCAATGCAGGAGGTTaGTTGGTGGCAGAGCTCTGCAAGTGTCCAACAGCA | + |
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Preference number: 6 (lower is better) Translates to: SWSSPPISNAGG*LVAELCKCPTA Trigger: TGCTGTTGGACACTTGCAGAGCTCTGCCACCAAGCAACCTCCTGCATTGGAAATCGGGGGACTACTCCAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 72 bp | AGCAGGCATTCCATGGAGCCGTGCACTGGCGTGGAGTaGCAGCCAGCGTCTGATAAAGAAAACGAAGATACT | + |
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Preference number: 6 (lower is better) Translates to: SRHSMEPCTGVE*QPASDKENEDT Trigger: AGTATCTTCGTTTTCTTTATCAGACGCTGGCTGGCACTCCACGCCAGTGCACGGCTCCATGGAATGCCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 72 bp | ATTTCCAATGCAGGAGGTTGCTTGGTGGCAGAGCTCTaGAAGTGTCCAACAGCAGGCATTCCATGGAGCCGT | + |
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Preference number: 6 (lower is better) Translates to: ISNAGGCLVAEL*KCPTAGIPWSR Trigger: ACGGCTCCATGGAATGCCTGCTGTTGGACACTTGCAGAGCTCTGCCACCAAGCAACCTCCTGCATTGGAAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 90 bp | ATAAGATCCTGGAGTAGTCCCCCGATTTCCAATGCAGGAGGTTGCTaGGTGGCAGAGCTCTGCAAGTGTCCAACAGCAGGCATTCCATGG | + |
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Preference number: 6 (lower is better) Translates to: IRSWSSPPISNAGGC*VAELCKCPTAGIPW Trigger: CCATGGAATGCCTGCTGTTGGACACTTGCAGAGCTCTGCCACCAAGCAACCTCCTGCATTGGAAATCGGGGGACTACTCCAGGATCTTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 72 bp | TTTTCTTCCCATGGCACTGAAGTGGAATATCCCAAGTaGCACCGAACTCAGAGAACTCCACGCCGGAATGGG | + |
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Preference number: 6 (lower is better) Translates to: FSSHGTEVEYPK*HRTQRTPRRNG Trigger: CCCATTCCGGCGTGGAGTTCTCTGAGTTCGGTGGCACTTGGGATATTCCACTTCAGTGCCATGGGAAGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CCA 72 bp | TTCTGCAGCTTCAAACAGCAAGCACGCATAAGATCCTaGAGTAGTCCCCCGATTTCCAATGCAGGAGGTTGC | + |
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Preference number: 6 (lower is better) Translates to: FCSFKQQARIRS*SSPPISNAGGC Trigger: GCAACCTCCTGCATTGGAAATCGGGGGACTACTCCAGGATCTTATGCGTGCTTGCTGTTTGAAGCTGCAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 90 bp | CGAAGCAGGAAAACTTCCTGGATGAGGCAGATCCATCTCAAGGCTTaGGATAAAAGGCTGAAGCAGGAGCAATTGGATACCACAACATTA | + |
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Preference number: 6 (lower is better) Translates to: RSRKTSWMRQIHLKA*DKRLKQEQLDTTTL Trigger: TAATGTTGTGGTATCCAATTGCTCCTGCTTCAGCCTTTTATCCAAAGCCTTGAGATGGATCTGCCTCATCCAGGAAGTTTTCCTGCTTCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 72 bp | AAAACTTCCTGGATGAGGCAGATCCATCTCAAGGCTTaGGATAAAAGGCTGAAGCAGGAGCAATTGGATACC | + |
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Preference number: 6 (lower is better) Translates to: KTSWMRQIHLKA*DKRLKQEQLDT Trigger: GGTATCCAATTGCTCCTGCTTCAGCCTTTTATCCAAAGCCTTGAGATGGATCTGCCTCATCCAGGAAGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 90 bp | TCAAGAGCCACAATTTACCATGGAAGCCTCTACTTAATATTCCGCTaGATCTGCCAAGTTTATAGCCTGGCAAATCTGAATACAAATGTC | + |
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Preference number: 6 (lower is better) Translates to: SRATIYHGSLYLIFR*ICQVYSLANLNTNV Trigger: GACATTTGTATTCAGATTTGCCAGGCTATAAACTTGGCAGATCAAGCGGAATATTAAGTAGAGGCTTCCATGGTAAATTGTGGCTCTTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 72 bp | CATTTATTGTTTACCATAACCCATTGCACACAAAGGTaGCAAAACCTCCAAGTTAGAGGAAATCCTGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: HLLFTITHCTQR*QNLQVRGNPER Trigger: CCTCTCAGGATTTCCTCTAACTTGGAGGTTTTGCAACCTTTGTGTGCAATGGGTTATGGTAAACAATAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 72 bp | ATAGGAACAAAGCATTGTCCTTACAATCTCTGCTTATaGCCAGTCCTGGTATTTACTTCTCATCAGCAACAG | + |
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Preference number: 6 (lower is better) Translates to: IGTKHCPYNLCL*PVLVFTSHQQQ Trigger: CTGTTGCTGATGAGAAGTAAATACCAGGACTGGCAATAAGCAGAGATTGTAAGGACAATGCTTTGTTCCTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 90 bp | AGCATCATTCATTTATTGTTTACCATAACCCATTGCACACAAAGGTaGCAAAACCTCCAAGTTAGAGGAAATCCTGAGAGGCTGCAAAAT | + |
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Preference number: 6 (lower is better) Translates to: SIIHLLFTITHCTQR*QNLQVRGNPERLQN Trigger: ATTTTGCAGCCTCTCAGGATTTCCTCTAACTTGGAGGTTTTGCAACCTTTGTGTGCAATGGGTTATGGTAAACAATAAATGAATGATGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 90 bp | ATGTCGATGCAAATGAGGATTCATTATTCTTACAAGGTCTTTGTGTaGAAGCTTAATGTAACTTGGTTCCTATGGTTGCTCAGGGAACGT | + |
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Preference number: 6 (lower is better) Translates to: MSMQMRIHYSYKVFV*KLNVTWFLWLLRER Trigger: ACGTTCCCTGAGCAACCATAGGAACCAAGTTACATTAAGCTTCAACACAAAGACCTTGTAAGAATAATGAATCCTCATTTGCATCGACAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 72 bp | TACCATGGAAGCCTCTACTTAATATTCCGCTTGATCTaGCAAGTTTATAGCCTGGCAAATCTGAATACAAAT | + |
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Preference number: 6 (lower is better) Translates to: YHGSLYLIFRLI*QVYSLANLNTN Trigger: ATTTGTATTCAGATTTGCCAGGCTATAAACTTGGCAGATCAAGCGGAATATTAAGTAGAGGCTTCCATGGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 72 bp | ACAATTTACCATGGAAGCCTCTACTTAATATTCCGCTaGATCTGCCAAGTTTATAGCCTGGCAAATCTGAAT | + |
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Preference number: 6 (lower is better) Translates to: TIYHGSLYLIFR*ICQVYSLANLN Trigger: ATTCAGATTTGCCAGGCTATAAACTTGGCAGATCAAGCGGAATATTAAGTAGAGGCTTCCATGGTAAATTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS TCA 72 bp | AAAATGAGTGTGAACTTTCATGAGGTTAATGCGTTTTaGACATACCAGAAAGATCAAACCTTAGCCCACACA | + |
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Preference number: 6 (lower is better) Translates to: KMSVNFHEVNAF*TYQKDQTLAHT Trigger: TGTGTGGGCTAAGGTTTGATCTTTCTGGTATGTTCAAAACGCATTAACCTCATGAAAGTTCACACTCATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS CAA 90 bp | GATCATGCAGTAAGGCTTGCTTCTTCATCCATAAATAAAGCACATTaGCATCCATTCAGTCAAATTAGCTCCATTAAAAAGGTGGTTATA | + |
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Preference number: 6 (lower is better) Translates to: DHAVRLASSSINKAH*HPFSQISSIKKVVI Trigger: TATAACCACCTTTTTAATGGAGCTAATTTGACTGAATGGATGCAAATGTGCTTTATTTATGGATGAAGAAGCAAGCCTTACTGCATGATC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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| CDS GCA 72 bp | TTTAGCATCATTCATTTATTGTTTACCATAACCCATTaGACACAAAGGTTGCAAAACCTCCAAGTTAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: FSIIHLLFTITH*TQRLQNLQVRG Trigger: TCCTCTAACTTGGAGGTTTTGCAACCTTTGTGTGCAATGGGTTATGGTAAACAATAAATGAATGATGCTAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000603837.1 |
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