Pregenerated sensors for LINC01098 (Homo sapiens)
Ensembl gene IDs: ENSG00000231171Ensembl transcript IDs: ENST00000507870.1, ENST00000666825.1, ENST00000667514.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATCCTGTCCTGGGTCTGGGTCATCCATCTGTCCATCAAGAGTCTGTaGTGTAGGCAGAGCCTTCAGCAGCAGATACTAGGTGCTTATCAC | + |
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Preference number: 5 (lower is better) Translates to: ILSWVWVIHLSIKSL*CRQSLQQQILGAYH Trigger: GTGATAAGCACCTAGTATCTGCTGCTGAAGGCTCTGCCTACATCACAGACTCTTGATGGACAGATGGATGACCCAGACCCAGGACAGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667514.1 |
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| CDS CCA 90 bp | ACTGTCTCAGAGGTAAGTGGTATCCAAATGTTAGTTCTGCATGGCTaGGGAGGCCTCAGGAAACTTGCAGTCATGGTAGAAGGCAAACCA | + |
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Preference number: 5 (lower is better) Translates to: TVSEVSGIQMLVLHG*GGLRKLAVMVEGKP Trigger: TGGTTTGCCTTCTACCATGACTGCAAGTTTCCTGAGGCCTCCCCAGCCATGCAGAACTAACATTTGGATACCACTTACCTCTGAGACAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507870.1 ENST00000666825.1 |
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| CDS CCA 90 bp | AAGAACTGTCTCAGAGGTAAGTGGTATCCAAATGTTAGTTCTGCATaGCTGGGGAGGCCTCAGGAAACTTGCAGTCATGGTAGAAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: KNCLRGKWYPNVSSA*LGRPQETCSHGRRQ Trigger: TTGCCTTCTACCATGACTGCAAGTTTCCTGAGGCCTCCCCAGCCATGCAGAACTAACATTTGGATACCACTTACCTCTGAGACAGTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000507870.1 ENST00000666825.1 |
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| CDS GCA 90 bp | TATCCAAATGTTAGTTCTGCATGGCTGGGGAGGCCTCAGGAAACTTaGAGTCATGGTAGAAGGCAAACCAGAAGAAAGGCACCTTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: YPNVSSAWLGRPQET*SHGRRQTRRKAPFS Trigger: TGAAAAAGGTGCCTTTCTTCTGGTTTGCCTTCTACCATGACTGCAAGTTTCCTGAGGCCTCCCCAGCCATGCAGAACTAACATTTGGATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000507870.1 ENST00000666825.1 |
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| CDS CCA 90 bp | TCCGGCAGAGCCATAGCAATCCCCACAAAGTCCCGAATGTTGGGCTaGTGGTTACTCAAGTCAGTTTTGCTTTATAACTTCTTCTCTCAA | + |
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Preference number: 5 (lower is better) Translates to: SGRAIAIPTKSRMLG*WLLKSVLLYNFFSQ Trigger: TTGAGAGAAGAAGTTATAAAGCAAAACTGACTTGAGTAACCACCAGCCCAACATTCGGGACTTTGTGGGGATTGCTATGGCTCTGCCGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000507870.1 |
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| CDS TCA 90 bp | ACTGCACTCCAGCTTGACCTTTTTCCAGATTGCATAAAGCAGCTGTaGATTCAGATTCAACACTTCATCTTTCATGTTGATGTGGATTCT | + |
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Preference number: 5 (lower is better) Translates to: TALQLDLFPDCIKQL*IQIQHFIFHVDVDS Trigger: AGAATCCACATCAACATGAAAGATGAAGTGTTGAATCTGAATTCACAGCTGCTTTATGCAATCTGGAAAAAGGTCAAGCTGGAGTGCAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000507870.1 |
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| CDS TCA 90 bp | AAAATGAGAAATCCCGTACTTTTTCCAGATTGCATAAAGCAGCTGTaGATTCAGATTCAACACTTCATCTTTCATGTTGATGTGGATTCT | + |
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Preference number: 5 (lower is better) Translates to: KMRNPVLFPDCIKQL*IQIQHFIFHVDVDS Trigger: AGAATCCACATCAACATGAAAGATGAAGTGTTGAATCTGAATTCACAGCTGCTTTATGCAATCTGGAAAAAGTACGGGATTTCTCATTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666825.1 |
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| CDS TCA 72 bp | TGGGTCTGGGTCATCCATCTGTCCATCAAGAGTCTGTaGTGTAGGCAGAGCCTTCAGCAGCAGATACTAGGT | + |
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Preference number: 6 (lower is better) Translates to: WVWVIHLSIKSL*CRQSLQQQILG Trigger: ACCTAGTATCTGCTGCTGAAGGCTCTGCCTACATCACAGACTCTTGATGGACAGATGGATGACCCAGACCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667514.1 |
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| CDS CCA 72 bp | CTCAGAGGTAAGTGGTATCCAAATGTTAGTTCTGCATaGCTGGGGAGGCCTCAGGAAACTTGCAGTCATGGT | + |
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Preference number: 6 (lower is better) Translates to: LRGKWYPNVSSA*LGRPQETCSHG Trigger: ACCATGACTGCAAGTTTCCTGAGGCCTCCCCAGCCATGCAGAACTAACATTTGGATACCACTTACCTCTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000507870.1 ENST00000666825.1 |
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| CDS CCA 72 bp | GAGGTAAGTGGTATCCAAATGTTAGTTCTGCATGGCTaGGGAGGCCTCAGGAAACTTGCAGTCATGGTAGAA | + |
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Preference number: 6 (lower is better) Translates to: EVSGIQMLVLHG*GGLRKLAVMVE Trigger: TTCTACCATGACTGCAAGTTTCCTGAGGCCTCCCCAGCCATGCAGAACTAACATTTGGATACCACTTACCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507870.1 ENST00000666825.1 |
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| CDS CCA 72 bp | GCCATAGCAATCCCCACAAAGTCCCGAATGTTGGGCTaGTGGTTACTCAAGTCAGTTTTGCTTTATAACTTC | + |
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Preference number: 6 (lower is better) Translates to: AIAIPTKSRMLG*WLLKSVLLYNF Trigger: GAAGTTATAAAGCAAAACTGACTTGAGTAACCACCAGCCCAACATTCGGGACTTTGTGGGGATTGCTATGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000507870.1 |
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| CDS CAA 90 bp | CTTATCACAAGTGACAGCAATATGGTGTCTGTTAACACAGTGGTTTaGAATTGGTGGCGTCCTGCTCTTTTTAAGGTCACAGAGTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: LITSDSNMVSVNTVV*NWWRPALFKVTESS Trigger: AGAGGACTCTGTGACCTTAAAAAGAGCAGGACGCCACCAATTCAAAACCACTGTGTTAACAGACACCATATTGCTGTCACTTGTGATAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000667514.1 |
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| CDS CCA 72 bp | ATAGCAATCCCCACAAAGTCCCGAATGTTGGGCTGGTaGTTACTCAAGTCAGTTTTGCTTTATAACTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: IAIPTKSRMLGW*LLKSVLLYNFF Trigger: GAAGAAGTTATAAAGCAAAACTGACTTGAGTAACCACCAGCCCAACATTCGGGACTTTGTGGGGATTGCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000507870.1 |
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| CDS CAA 72 bp | AGTGACAGCAATATGGTGTCTGTTAACACAGTGGTTTaGAATTGGTGGCGTCCTGCTCTTTTTAAGGTCACA | + |
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Preference number: 6 (lower is better) Translates to: SDSNMVSVNTVV*NWWRPALFKVT Trigger: TGTGACCTTAAAAAGAGCAGGACGCCACCAATTCAAAACCACTGTGTTAACAGACACCATATTGCTGTCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000667514.1 |
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| CDS GCA 72 bp | TTTTTGACAAGCATTACACATGCTAATGACAGGTTCTaGATCACTATTGCTTGTAAGTCCGGCAGAGCCATA | + |
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Preference number: 6 (lower is better) Translates to: FLTSITHANDRF*ITIACKSGRAI Trigger: TATGGCTCTGCCGGACTTACAAGCAATAGTGATGCAGAACCTGTCATTAGCATGTGTAATGCTTGTCAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000507870.1 |
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| CDS CCA 72 bp | ATATACTTCAGAGAATCAGACACATTCTGTAGGCTCTaGAAAACATACATTGACTTGCTCAACCCCTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: IYFRESDTFCRL*KTYIDLLNPFP Trigger: GGGAAAGGGGTTGAGCAAGTCAATGTATGTTTTCCAGAGCCTACAGAATGTGTCTGATTCTCTGAAGTATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000507870.1 ENST00000667514.1 |
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| CDS CCA 72 bp | ATTTATAATTTCCAAAAGAACTGTCTCAGAGGTAAGTaGTATCCAAATGTTAGTTCTGCATGGCTGGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: IYNFQKNCLRGK*YPNVSSAWLGR Trigger: CCTCCCCAGCCATGCAGAACTAACATTTGGATACCACTTACCTCTGAGACAGTTCTTTTGGAAATTATAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000507870.1 ENST00000666825.1 |
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| CDS CCA 72 bp | TATTTTTCCCAAAATAACACATTACTCTTGCCACAGTaGGACATTGTTAAGCTGTCAGTCATTGCCCACTGT | + |
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Preference number: 6 (lower is better) Translates to: YFSQNNTLLLPQ*DIVKLSVIAHC Trigger: ACAGTGGGCAATGACTGACAGCTTAACAATGTCCCACTGTGGCAAGAGTAATGTGTTATTTTGGGAAAAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666825.1 |
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