Pregenerated sensors for LINC01080 (Homo sapiens)
Ensembl gene IDs: ENSG00000281721Ensembl transcript IDs: ENST00000627044.1
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCAGAGGCTCTTAGGGAGAATCCATTTCTTGCCTCTTTCAGCTTCTaGTGCTGTGGGCATTCCTTGTGGCGTGGCCACATTGCTCCAATC | + |
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Preference number: 5 (lower is better) Translates to: PEALRENPFLASFSF*CCGHSLWRGHIAPI Trigger: GATTGGAGCAATGTGGCCACGCCACAAGGAATGCCCACAGCACCAGAAGCTGAAAGAGGCAAGAAATGGATTCTCCCTAAGAGCCTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 90 bp | GAGGCTCTTAGGGAGAATCCATTTCTTGCCTCTTTCAGCTTCTGGTaGTGTGGGCATTCCTTGTGGCGTGGCCACATTGCTCCAATCTCT | + |
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Preference number: 5 (lower is better) Translates to: EALRENPFLASFSFW*CGHSLWRGHIAPIS Trigger: AGAGATTGGAGCAATGTGGCCACGCCACAAGGAATGCCCACAGCACCAGAAGCTGAAAGAGGCAAGAAATGGATTCTCCCTAAGAGCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CCA 90 bp | TCTTGCCTCTTTCAGCTTCTGGTGCTGTGGGCATTCCTTGTGGCGTaGCCACATTGCTCCAATCTCTGCTTCTGTGATTGCATTGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: SCLFQLLVLWAFLVA*PHCSNLCFCDCIAV Trigger: GACAGCAATGCAATCACAGAAGCAGAGATTGGAGCAATGTGGCCACGCCACAAGGAATGCCCACAGCACCAGAAGCTGAAAGAGGCAAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CCA 90 bp | TGCTCTCACAGTTCTGGAGGCCAGAGGTTCTATAGTGAGTTTCACTaGGCCCAAACCAAGAAGGCTGTGTTCCTTCCAGAGGCTCTTAGG | + |
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Preference number: 5 (lower is better) Translates to: CSHSSGGQRFYSEFH*AQTKKAVFLPEALR Trigger: CCTAAGAGCCTCTGGAAGGAACACAGCCTTCTTGGTTTGGGCCCAGTGAAACTCACTATAGAACCTCTGGCCTCCAGAACTGTGAGAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 90 bp | GTGCTGTGGGCATTCCTTGTGGCGTGGCCACATTGCTCCAATCTCTaGTTCTGTGATTGCATTGCTGTCTCCTCTTCTGCTGTTTCAAGA | + |
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Preference number: 5 (lower is better) Translates to: VLWAFLVAWPHCSNL*FCDCIAVSSSAVSR Trigger: TCTTGAAACAGCAGAAGAGGAGACAGCAATGCAATCACAGAAGCAGAGATTGGAGCAATGTGGCCACGCCACAAGGAATGCCCACAGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CCA 90 bp | CCATTTCTTGCCTCTTTCAGCTTCTGGTGCTGTGGGCATTCCTTGTaGCGTGGCCACATTGCTCCAATCTCTGCTTCTGTGATTGCATTG | + |
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Preference number: 5 (lower is better) Translates to: PFLASFSFWCCGHSL*RGHIAPISASVIAL Trigger: CAATGCAATCACAGAAGCAGAGATTGGAGCAATGTGGCCACGCCACAAGGAATGCCCACAGCACCAGAAGCTGAAAGAGGCAAGAAATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 90 bp | GAGGACAGAGTCTCAGAGGATGTTGAGCTGCATGCCCAGCGTTGCTaGAGTTTGACTGAGACCAGCTGCCTTGGTATTCATTCATATTCA | + |
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Preference number: 5 (lower is better) Translates to: EDRVSEDVELHAQRC*SLTETSCLGIHSYS Trigger: TGAATATGAATGAATACCAAGGCAGCTGGTCTCAGTCAAACTGCAGCAACGCTGGGCATGCAGCTCAACATCCTCTGAGACTCTGTCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 90 bp | AATGAGGACAGAGTCTCAGAGGATGTTGAGCTGCATGCCCAGCGTTaGTGCAGTTTGACTGAGACCAGCTGCCTTGGTATTCATTCATAT | + |
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Preference number: 5 (lower is better) Translates to: NEDRVSEDVELHAQR*CSLTETSCLGIHSY Trigger: ATATGAATGAATACCAAGGCAGCTGGTCTCAGTCAAACTGCAGCAACGCTGGGCATGCAGCTCAACATCCTCTGAGACTCTGTCCTCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 90 bp | CTTAAACGAGAGAGGCGTATTCATGCACTTAGCACAATAACCACTTaGAGTACAATCTCAGCTATGCTGGTTCTCTATCCTACCTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: LKRERRIHALSTITT*STISAMLVLYPTFL Trigger: CAGGAAGGTAGGATAGAGAACCAGCATAGCTGAGATTGTACTGCAAGTGGTTATTGTGCTAAGTGCATGAATACGCCTCTCTCGTTTAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS TCA 90 bp | ACGACTTTCCTATTATTAAACTCTTGCACTGTGGCAGGCACTCTGTaGAAGCCTTACCTCATTTATGTGAGAACTTATGAGGTAGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: TTFLLLNSCTVAGTL*KPYLIYVRTYEVVP Trigger: TGGAACTACCTCATAAGTTCTCACATAAATGAGGTAAGGCTTTCACAGAGTGCCTGCCACAGTGCAAGAGTTTAATAATAGGAAAGTCGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CCA 72 bp | GCCTCTTTCAGCTTCTGGTGCTGTGGGCATTCCTTGTaGCGTGGCCACATTGCTCCAATCTCTGCTTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: ASFSFWCCGHSL*RGHIAPISASV Trigger: CACAGAAGCAGAGATTGGAGCAATGTGGCCACGCCACAAGGAATGCCCACAGCACCAGAAGCTGAAAGAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 72 bp | CTGGTGCTGTGGGCATTCCTTGTGGCGTGGCCACATTaGTCCAATCTCTGCTTCTGTGATTGCATTGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: LVLWAFLVAWPH*SNLCFCDCIAV Trigger: GACAGCAATGCAATCACAGAAGCAGAGATTGGAGCAATGTGGCCACGCCACAAGGAATGCCCACAGCACCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CAA 72 bp | CTTGCCTCTTTCAGCTTCTGGTGCTGTGGGCATTCCTaGTGGCGTGGCCACATTGCTCCAATCTCTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: LASFSFWCCGHS*WRGHIAPISAS Trigger: AGAAGCAGAGATTGGAGCAATGTGGCCACGCCACAAGGAATGCCCACAGCACCAGAAGCTGAAAGAGGCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 72 bp | GTCTCAGAGGATGTTGAGCTGCATGCCCAGCGTTGCTaGAGTTTGACTGAGACCAGCTGCCTTGGTATTCAT | + |
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Preference number: 6 (lower is better) Translates to: VSEDVELHAQRC*SLTETSCLGIH Trigger: ATGAATACCAAGGCAGCTGGTCTCAGTCAAACTGCAGCAACGCTGGGCATGCAGCTCAACATCCTCTGAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 72 bp | AGAGTCTCAGAGGATGTTGAGCTGCATGCCCAGCGTTaGTGCAGTTTGACTGAGACCAGCTGCCTTGGTATT | + |
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Preference number: 6 (lower is better) Translates to: RVSEDVELHAQR*CSLTETSCLGI Trigger: AATACCAAGGCAGCTGGTCTCAGTCAAACTGCAGCAACGCTGGGCATGCAGCTCAACATCCTCTGAGACTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 72 bp | AGGGAGAATCCATTTCTTGCCTCTTTCAGCTTCTGGTaGTGTGGGCATTCCTTGTGGCGTGGCCACATTGCT | + |
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Preference number: 6 (lower is better) Translates to: RENPFLASFSFW*CGHSLWRGHIA Trigger: AGCAATGTGGCCACGCCACAAGGAATGCCCACAGCACCAGAAGCTGAAAGAGGCAAGAAATGGATTCTCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CCA 72 bp | TTTCAGCTTCTGGTGCTGTGGGCATTCCTTGTGGCGTaGCCACATTGCTCCAATCTCTGCTTCTGTGATTGC | + |
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Preference number: 6 (lower is better) Translates to: FQLLVLWAFLVA*PHCSNLCFCDC Trigger: GCAATCACAGAAGCAGAGATTGGAGCAATGTGGCCACGCCACAAGGAATGCCCACAGCACCAGAAGCTGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CAA 90 bp | AGAAGGCTGTGTTCCTTCCAGAGGCTCTTAGGGAGAATCCATTTCTaGCCTCTTTCAGCTTCTGGTGCTGTGGGCATTCCTTGTGGCGTG | + |
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Preference number: 6 (lower is better) Translates to: RRLCSFQRLLGRIHF*PLSASGAVGIPCGV Trigger: CACGCCACAAGGAATGCCCACAGCACCAGAAGCTGAAAGAGGCAAGAAATGGATTCTCCCTAAGAGCCTCTGGAAGGAACACAGCCTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CCA 72 bp | AGTTCTGGAGGCCAGAGGTTCTATAGTGAGTTTCACTaGGCCCAAACCAAGAAGGCTGTGTTCCTTCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SSGGQRFYSEFH*AQTKKAVFLPE Trigger: CTCTGGAAGGAACACAGCCTTCTTGGTTTGGGCCCAGTGAAACTCACTATAGAACCTCTGGCCTCCAGAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CAA 90 bp | AATCCATTTCTTGCCTCTTTCAGCTTCTGGTGCTGTGGGCATTCCTaGTGGCGTGGCCACATTGCTCCAATCTCTGCTTCTGTGATTGCA | + |
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Preference number: 6 (lower is better) Translates to: NPFLASFSFWCCGHS*WRGHIAPISASVIA Trigger: TGCAATCACAGAAGCAGAGATTGGAGCAATGTGGCCACGCCACAAGGAATGCCCACAGCACCAGAAGCTGAAAGAGGCAAGAAATGGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS TCA 72 bp | TGTGGCGTGGCCACATTGCTCCAATCTCTGCTTCTGTaGTTGCATTGCTGTCTCCTCTTCTGCTGTTTCAAG | + |
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Preference number: 6 (lower is better) Translates to: CGVATLLQSLLL*LHCCLLFCCFK Trigger: CTTGAAACAGCAGAAGAGGAGACAGCAATGCAATCACAGAAGCAGAGATTGGAGCAATGTGGCCACGCCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CAA 72 bp | GAGGATGTTGAGCTGCATGCCCAGCGTTGCTGCAGTTaGACTGAGACCAGCTGCCTTGGTATTCATTCATAT | + |
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Preference number: 6 (lower is better) Translates to: EDVELHAQRCCS*TETSCLGIHSY Trigger: ATATGAATGAATACCAAGGCAGCTGGTCTCAGTCAAACTGCAGCAACGCTGGGCATGCAGCTCAACATCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CAA 72 bp | TGTTCCTTCCAGAGGCTCTTAGGGAGAATCCATTTCTaGCCTCTTTCAGCTTCTGGTGCTGTGGGCATTCCT | + |
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Preference number: 6 (lower is better) Translates to: CSFQRLLGRIHF*PLSASGAVGIP Trigger: AGGAATGCCCACAGCACCAGAAGCTGAAAGAGGCAAGAAATGGATTCTCCCTAAGAGCCTCTGGAAGGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS TCA 72 bp | AGGATGTTGAGCTGCATGCCCAGCGTTGCTGCAGTTTaGCTGAGACCAGCTGCCTTGGTATTCATTCATATT | + |
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Preference number: 6 (lower is better) Translates to: RMLSCMPSVAAV*LRPAALVFIHI Trigger: AATATGAATGAATACCAAGGCAGCTGGTCTCAGTCAAACTGCAGCAACGCTGGGCATGCAGCTCAACATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS TCA 72 bp | GAGGCTTGTAGAGATTACACAACTTGCTGCAGATGGTaGACCTTGGATCCGAAATCAAAGCAAAGCCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: EACRDYTTCCRW*TLDPKSKQSLC Trigger: ACACAGGCTTTGCTTTGATTTCGGATCCAAGGTTCACCATCTGCAGCAAGTTGTGTAATCTCTACAAGCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 72 bp | GAGAGGCGTATTCATGCACTTAGCACAATAACCACTTaGAGTACAATCTCAGCTATGCTGGTTCTCTATCCT | + |
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Preference number: 6 (lower is better) Translates to: ERRIHALSTITT*STISAMLVLYP Trigger: AGGATAGAGAACCAGCATAGCTGAGATTGTACTGCAAGTGGTTATTGTGCTAAGTGCATGAATACGCCTCTC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CCA 72 bp | GTAGAGATTACACAACTTGCTGCAGATGGTGAACCTTaGATCCGAAATCAAAGCAAAGCCTGTGTTGATAGA | + |
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Preference number: 6 (lower is better) Translates to: VEITQLAADGEP*IRNQSKACVDR Trigger: TCTATCAACACAGGCTTTGCTTTGATTTCGGATCCAAGGTTCACCATCTGCAGCAAGTTGTGTAATCTCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CAA 90 bp | CATCCAGATAGCAATAGCGATGACGACTTTCCTATTATTAAACTCTaGCACTGTGGCAGGCACTCTGTGAAAGCCTTACCTCATTTATGT | + |
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Preference number: 6 (lower is better) Translates to: HPDSNSDDDFPIIKL*HCGRHSVKALPHLC Trigger: ACATAAATGAGGTAAGGCTTTCACAGAGTGCCTGCCACAGTGCAAGAGTTTAATAATAGGAAAGTCGTCATCGCTATTGCTATCTGGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS TCA 72 bp | TCTGTGAAAGCCTTACCTCATTTATGTGAGAACTTATaGGGTAGTTCCATTCTACCTACAAGGAAACTGAGG | + |
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Preference number: 6 (lower is better) Translates to: SVKALPHLCENL*GSSILPTRKLR Trigger: CCTCAGTTTCCTTGTAGGTAGAATGGAACTACCTCATAAGTTCTCACATAAATGAGGTAAGGCTTTCACAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS TCA 72 bp | CTATTATTAAACTCTTGCACTGTGGCAGGCACTCTGTaGAAGCCTTACCTCATTTATGTGAGAACTTATGAG | + |
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Preference number: 6 (lower is better) Translates to: LLLNSCTVAGTL*KPYLIYVRTYE Trigger: CTCATAAGTTCTCACATAAATGAGGTAAGGCTTTCACAGAGTGCCTGCCACAGTGCAAGAGTTTAATAATAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS CAA 72 bp | GTGAACCTTGGATCCGAAATCAAAGCAAAGCCTGTGTaGATAGACAAACATAATAGAGAGTGGGCAATGAAA | + |
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Preference number: 6 (lower is better) Translates to: VNLGSEIKAKPV*IDKHNREWAMK Trigger: TTTCATTGCCCACTCTCTATTATGTTTGTCTATCAACACAGGCTTTGCTTTGATTTCGGATCCAAGGTTCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS TCA 72 bp | ACAATGACAAAAAGCTTTCAGTCATCTGCAGCTATGTaGATAGGTATTTCTGTGACTCAATGCCAGTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: TMTKSFQSSAAM*IGISVTQCQCK Trigger: TTTGCACTGGCATTGAGTCACAGAAATACCTATTCACATAGCTGCAGATGACTGAAAGCTTTTTGTCATTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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| CDS GCA 72 bp | ATTATTTCCCATGGTATCCTACAAACTACTTCGTTTTaGTCTCTTAGTCCCTTTCATACTTGCTTCAACTCT | + |
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Preference number: 6 (lower is better) Translates to: IISHGILQTTSF*SLSPFHTCFNS Trigger: AGAGTTGAAGCAAGTATGAAAGGGACTAAGAGAGCAAAACGAAGTAGTTTGTAGGATACCATGGGAAATAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627044.1 |
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