Pregenerated sensors for LINC01054 (Homo sapiens)

Ensembl gene IDs: ENSG00000229723

Ensembl transcript IDs: ENST00000446989.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GAGATCCGCAGACCCTCTTGGCTCCCAGCATGCTGGGGTCAGGTTTaGAGTCTTAGGAGATCGGTGAACTCTTTTTGGAGAGGATCTGCA	+
Preference number: 5 (lower is better) Translates to: EIRRPSWLPACWGQV*SLRRSVNSFWRGSA Trigger: TGCAGATCCTCTCCAAAAAGAGTTCACCGATCTCCTAAGACTGCAAACCTGACCCCAGCATGCTGGGAGCCAAGAGGGTCTGCGGATCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000446989.1
CDS GCA 90 bp	AATTTGCTAAGCAGGGAGATCCGCAGACCCTCTTGGCTCCCAGCATaGTGGGGTCAGGTTTGCAGTCTTAGGAGATCGGTGAACTCTTTT	+
Preference number: 5 (lower is better) Translates to: NLLSREIRRPSWLPA*WGQVCSLRRSVNSF Trigger: AAAAGAGTTCACCGATCTCCTAAGACTGCAAACCTGACCCCAGCATGCTGGGAGCCAAGAGGGTCTGCGGATCTCCCTGCTTAGCAAATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446989.1
CDS CCA 90 bp	ATATATACACACAATTTGCTAAGCAGGGAGATCCGCAGACCCTCTTaGCTCCCAGCATGCTGGGGTCAGGTTTGCAGTCTTAGGAGATCG	+
Preference number: 5 (lower is better) Translates to: IYTHNLLSREIRRPS*LPACWGQVCSLRRS Trigger: CGATCTCCTAAGACTGCAAACCTGACCCCAGCATGCTGGGAGCCAAGAGGGTCTGCGGATCTCCCTGCTTAGCAAATTGTGTGTATATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446989.1
CDS GCA 72 bp	AGCAGGGAGATCCGCAGACCCTCTTGGCTCCCAGCATaGTGGGGTCAGGTTTGCAGTCTTAGGAGATCGGTG	+
Preference number: 6 (lower is better) Translates to: SREIRRPSWLPA*WGQVCSLRRSV Trigger: CACCGATCTCCTAAGACTGCAAACCTGACCCCAGCATGCTGGGAGCCAAGAGGGTCTGCGGATCTCCCTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446989.1
CDS CCA 72 bp	CACAATTTGCTAAGCAGGGAGATCCGCAGACCCTCTTaGCTCCCAGCATGCTGGGGTCAGGTTTGCAGTCTT	+
Preference number: 6 (lower is better) Translates to: HNLLSREIRRPS*LPACWGQVCSL Trigger: AAGACTGCAAACCTGACCCCAGCATGCTGGGAGCCAAGAGGGTCTGCGGATCTCCCTGCTTAGCAAATTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446989.1
CDS CAA 72 bp	ACACAATTTGCTAAGCAGGGAGATCCGCAGACCCTCTaGGCTCCCAGCATGCTGGGGTCAGGTTTGCAGTCT	+
Preference number: 6 (lower is better) Translates to: TQFAKQGDPQTL*APSMLGSGLQS Trigger: AGACTGCAAACCTGACCCCAGCATGCTGGGAGCCAAGAGGGTCTGCGGATCTCCCTGCTTAGCAAATTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446989.1
CDS GCA 72 bp	AGACCCTCTTGGCTCCCAGCATGCTGGGGTCAGGTTTaGAGTCTTAGGAGATCGGTGAACTCTTTTTGGAGA	+
Preference number: 6 (lower is better) Translates to: RPSWLPACWGQV*SLRRSVNSFWR Trigger: TCTCCAAAAAGAGTTCACCGATCTCCTAAGACTGCAAACCTGACCCCAGCATGCTGGGAGCCAAGAGGGTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000446989.1
CDS CCA 72 bp	CAGGTTTGCAGTCTTAGGAGATCGGTGAACTCTTTTTaGAGAGGATCTGCAAATACCAACAGTTTCAGGGTT	+
Preference number: 6 (lower is better) Translates to: QVCSLRRSVNSF*RGSANTNSFRV Trigger: AACCCTGAAACTGTTGGTATTTGCAGATCCTCTCCAAAAAGAGTTCACCGATCTCCTAAGACTGCAAACCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000446989.1

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