Pregenerated sensors for LINC01044 (Homo sapiens)
Ensembl gene IDs: ENSG00000223626Ensembl transcript IDs: ENST00000413637.1, ENST00000632006.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGATGGCTCCAAGCGTGTAGCAGTGGCAATGCCTTCAGTGGTCCTTaGCTCTGCGTTGGCTGGGCTGGCTTCCTCAGGCGGGAGCATCGC | + |
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Preference number: 5 (lower is better) Translates to: GWLQACSSGNAFSGP*LCVGWAGFLRREHR Trigger: GCGATGCTCCCGCCTGAGGAAGCCAGCCCAGCCAACGCAGAGCCAAGGACCACTGAAGGCATTGCCACTGCTACACGCTTGGAGCCATCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000413637.1 ENST00000632006.1 |
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| CDS GCA 90 bp | CTCCAAGCGTGTAGCAGTGGCAATGCCTTCAGTGGTCCTTGGCTCTaGGTTGGCTGGGCTGGCTTCCTCAGGCGGGAGCATCGCACACTT | + |
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Preference number: 5 (lower is better) Translates to: LQACSSGNAFSGPWL*VGWAGFLRREHRTL Trigger: AAGTGTGCGATGCTCCCGCCTGAGGAAGCCAGCCCAGCCAACGCAGAGCCAAGGACCACTGAAGGCATTGCCACTGCTACACGCTTGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000413637.1 ENST00000632006.1 |
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| CDS CCA 90 bp | CAGTGGCAATGCCTTCAGTGGTCCTTGGCTCTGCGTTGGCTGGGCTaGCTTCCTCAGGCGGGAGCATCGCACACTTTTCTCATCCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: QWQCLQWSLALRWLG*LPQAGASHTFLILW Trigger: CCACAGGATGAGAAAAGTGTGCGATGCTCCCGCCTGAGGAAGCCAGCCCAGCCAACGCAGAGCCAAGGACCACTGAAGGCATTGCCACTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000413637.1 ENST00000632006.1 |
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| CDS CCA 90 bp | TGTAGCAGTGGCAATGCCTTCAGTGGTCCTTGGCTCTGCGTTGGCTaGGCTGGCTTCCTCAGGCGGGAGCATCGCACACTTTTCTCATCC | + |
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Preference number: 5 (lower is better) Translates to: CSSGNAFSGPWLCVG*AGFLRREHRTLFSS Trigger: GGATGAGAAAAGTGTGCGATGCTCCCGCCTGAGGAAGCCAGCCCAGCCAACGCAGAGCCAAGGACCACTGAAGGCATTGCCACTGCTACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000413637.1 ENST00000632006.1 |
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| CDS CCA 72 bp | CAGTGGCAATGCCTTCAGTGGTCCTTGGCTCTGCGTTaGCTGGGCTGGCTTCCTCAGGCGGGAGCATCGCAC | + |
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Preference number: 6 (lower is better) Translates to: QWQCLQWSLALR*LGWLPQAGASH Trigger: GTGCGATGCTCCCGCCTGAGGAAGCCAGCCCAGCCAACGCAGAGCCAAGGACCACTGAAGGCATTGCCACTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000413637.1 ENST00000632006.1 |
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| CDS TCA 72 bp | GGACATCGATCCGTTTCAAACACACGCCTGTGTCCGTaGGGAGTCCGAGAGGCAGAGCTGGAGCGTCGCCCG | + |
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Preference number: 6 (lower is better) Translates to: GHRSVSNTRLCP*GVREAELERRP Trigger: CGGGCGACGCTCCAGCTCTGCCTCTCGGACTCCTCACGGACACAGGCGTGTGTTTGAAACGGATCGATGTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000413637.1 ENST00000632006.1 |
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| CDS CCA 72 bp | GGCAATGCCTTCAGTGGTCCTTGGCTCTGCGTTGGCTaGGCTGGCTTCCTCAGGCGGGAGCATCGCACACTT | + |
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Preference number: 6 (lower is better) Translates to: GNAFSGPWLCVG*AGFLRREHRTL Trigger: AAGTGTGCGATGCTCCCGCCTGAGGAAGCCAGCCCAGCCAACGCAGAGCCAAGGACCACTGAAGGCATTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000413637.1 ENST00000632006.1 |
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| CDS CCA 72 bp | CAAGCGTGTAGCAGTGGCAATGCCTTCAGTGGTCCTTaGCTCTGCGTTGGCTGGGCTGGCTTCCTCAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: QACSSGNAFSGP*LCVGWAGFLRR Trigger: CCGCCTGAGGAAGCCAGCCCAGCCAACGCAGAGCCAAGGACCACTGAAGGCATTGCCACTGCTACACGCTTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000413637.1 ENST00000632006.1 |
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| CDS GCA 72 bp | TGTAGCAGTGGCAATGCCTTCAGTGGTCCTTGGCTCTaGGTTGGCTGGGCTGGCTTCCTCAGGCGGGAGCAT | + |
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Preference number: 6 (lower is better) Translates to: CSSGNAFSGPWL*VGWAGFLRREH Trigger: ATGCTCCCGCCTGAGGAAGCCAGCCCAGCCAACGCAGAGCCAAGGACCACTGAAGGCATTGCCACTGCTACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000413637.1 ENST00000632006.1 |
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| CDS CCA 72 bp | TGCCTTCAGTGGTCCTTGGCTCTGCGTTGGCTGGGCTaGCTTCCTCAGGCGGGAGCATCGCACACTTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: CLQWSLALRWLG*LPQAGASHTFL Trigger: GAGAAAAGTGTGCGATGCTCCCGCCTGAGGAAGCCAGCCCAGCCAACGCAGAGCCAAGGACCACTGAAGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000413637.1 ENST00000632006.1 |
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