Pregenerated sensors for LINC01038 (Homo sapiens)

Ensembl gene IDs: ENSG00000229011

Ensembl transcript IDs: ENST00000457858.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TTCCTCTTAATCCTCAGAGTCACTTTGTTTCTGAGTTTCCATCTATaGAACAAGGTTAATAGGACTCATCAATCTCCCAGGAGGGTGTTC	+
Preference number: 5 (lower is better) Translates to: FLLILRVTLFLSFHL*NKVNRTHQSPRRVF Trigger: GAACACCCTCCTGGGAGATTGATGAGTCCTATTAACCTTGTTGCATAGATGGAAACTCAGAAACAAAGTGACTCTGAGGATTAAGAGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457858.1
CDS GCA 72 bp	ATCCTCAGAGTCACTTTGTTTCTGAGTTTCCATCTATaGAACAAGGTTAATAGGACTCATCAATCTCCCAGG	+
Preference number: 6 (lower is better) Translates to: ILRVTLFLSFHL*NKVNRTHQSPR Trigger: CCTGGGAGATTGATGAGTCCTATTAACCTTGTTGCATAGATGGAAACTCAGAAACAAAGTGACTCTGAGGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457858.1
CDS CAA 90 bp	AATCCTGGTGCTGACATTGACTTCCTCTTAATCCTCAGAGTCACTTaGTTTCTGAGTTTCCATCTATGCAACAAGGTTAATAGGACTCAT	+
Preference number: 6 (lower is better) Translates to: NPGADIDFLLILRVT*FLSFHLCNKVNRTH Trigger: ATGAGTCCTATTAACCTTGTTGCATAGATGGAAACTCAGAAACAAAGTGACTCTGAGGATTAAGAGGAAGTCAATGTCAGCACCAGGATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457858.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu