Pregenerated sensors for LINC01005 (Homo sapiens)
Ensembl gene IDs: ENSG00000228564Ensembl transcript IDs: ENST00000441691.1, ENST00000451440.1, ENST00000647881.1, ENST00000649157.1
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | AGTGGCCCCCATGGGCACAGCCAAGGCAGGAGAGTGACATCACCTTaGCCCTGGGCTCAGCAATGGGTCACAATCTCTCCAGTGGGCAGG | + |
Preference number: 5 (lower is better) Translates to: SGPHGHSQGRRVTSP*PWAQQWVTISPVGR Trigger: CCTGCCCACTGGAGAGATTGTGACCCATTGCTGAGCCCAGGGCCAAGGTGATGTCACTCTCCTGCCTTGGCTGTGCCCATGGGGGCCACT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441691.1 |
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CDS CCA 90 bp | CCCCATGGGCACAGCCAAGGCAGGAGAGTGACATCACCTTGGCCCTaGGCTCAGCAATGGGTCACAATCTCTCCAGTGGGCAGGAACCAG | + |
Preference number: 5 (lower is better) Translates to: PHGHSQGRRVTSPWP*AQQWVTISPVGRNQ Trigger: CTGGTTCCTGCCCACTGGAGAGATTGTGACCCATTGCTGAGCCCAGGGCCAAGGTGATGTCACTCTCCTGCCTTGGCTGTGCCCATGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441691.1 |
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CDS TCA 90 bp | ACAGGTGTCACAGTGGCCCCCATGGGCACAGCCAAGGCAGGAGAGTaGCATCACCTTGGCCCTGGGCTCAGCAATGGGTCACAATCTCTC | + |
Preference number: 5 (lower is better) Translates to: TGVTVAPMGTAKAGE*HHLGPGLSNGSQSL Trigger: GAGAGATTGTGACCCATTGCTGAGCCCAGGGCCAAGGTGATGTCACTCTCCTGCCTTGGCTGTGCCCATGGGGGCCACTGTGACACCTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441691.1 |
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CDS CCA 90 bp | TCTTCTCCCAGGGCCCAGCCTACAAATGGCATTGTGGCATCTCTCTaGGCCCACTGGCTAGGTGATGTGACTCTGCTTTTCTGCCTGGAC | + |
Preference number: 5 (lower is better) Translates to: SSPRAQPTNGIVASL*AHWLGDVTLLFCLD Trigger: GTCCAGGCAGAAAAGCAGAGTCACATCACCTAGCCAGTGGGCCCAGAGAGATGCCACAATGCCATTTGTAGGCTGGGCCCTGGGAGAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CCA 90 bp | CATCACCTTGGCCCTGGGCTCAGCAATGGGTCACAATCTCTCCAGTaGGCAGGAACCAGGCAAGAGAGGAGAATCACATCACCTAGATGC | + |
Preference number: 5 (lower is better) Translates to: HHLGPGLSNGSQSLQ*AGTRQERRITSPRC Trigger: GCATCTAGGTGATGTGATTCTCCTCTCTTGCCTGGTTCCTGCCCACTGGAGAGATTGTGACCCATTGCTGAGCCCAGGGCCAAGGTGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441691.1 |
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CDS CCA 90 bp | AGGGCCCAGCCTACAAATGGCATTGTGGCATCTCTCTGGGCCCACTaGCTAGGTGATGTGACTCTGCTTTTCTGCCTGGACACTTTCCAC | + |
Preference number: 5 (lower is better) Translates to: RAQPTNGIVASLWAH*LGDVTLLFCLDTFH Trigger: GTGGAAAGTGTCCAGGCAGAAAAGCAGAGTCACATCACCTAGCCAGTGGGCCCAGAGAGATGCCACAATGCCATTTGTAGGCTGGGCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CCA 90 bp | CATCTTCTTGGTGCTGAGCCAAGTGAAATGTTCCAATGCCCTCTGTaGGCAGGGCCCAGGCAGAAGAGTAGAGTCACATCACCTAGATGC | + |
Preference number: 5 (lower is better) Translates to: HLLGAEPSEMFQCPL*AGPRQKSRVTSPRC Trigger: GCATCTAGGTGATGTGACTCTACTCTTCTGCCTGGGCCCTGCCCACAGAGGGCATTGGAACATTTCACTTGGCTCAGCACCAAGAAGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CCA 90 bp | TCTCCTGAATGGGCCCTGCTCTCAGAGAGGATTTTCACCCATCGCTaGGCCAATCATATAGGTGATGTGTCTCTCCTCTGTTGCCTGGAC | + |
Preference number: 5 (lower is better) Translates to: SPEWALLSERIFTHR*ANHIGDVSLLCCLD Trigger: GTCCAGGCAACAGAGGAGAGACACATCACCTATATGATTGGCCCAGCGATGGGTGAAAATCCTCTCTGAGAGCAGGGCCCATTCAGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS TCA 90 bp | GCCTACAAATGGCATTGTGGCATCTCTCTGGGCCCACTGGCTAGGTaGTGTGACTCTGCTTTTCTGCCTGGACACTTTCCACAAAAGGAA | + |
Preference number: 5 (lower is better) Translates to: AYKWHCGISLGPLAR*CDSAFLPGHFPQKE Trigger: TTCCTTTTGTGGAAAGTGTCCAGGCAGAAAAGCAGAGTCACATCACCTAGCCAGTGGGCCCAGAGAGATGCCACAATGCCATTTGTAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CCA 90 bp | TCTCTTGTCTGGAAACTTTTTCCAGTTGGGATCACAACATATTGCTaGGCCCAGAACTGGGTGATGTTATTCTTCTCCCAGGGCCCAGCC | + |
Preference number: 5 (lower is better) Translates to: SLVWKLFPVGITTYC*AQNWVMLFFSQGPA Trigger: GGCTGGGCCCTGGGAGAAGAATAACATCACCCAGTTCTGGGCCCAGCAATATGTTGTGATCCCAACTGGAAAAAGTTTCCAGACAAGAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS TCA 90 bp | TTTTTCCAGTTGGGATCACAACATATTGCTGGGCCCAGAACTGGGTaGTGTTATTCTTCTCCCAGGGCCCAGCCTACAAATGGCATTGTG | + |
Preference number: 5 (lower is better) Translates to: FFQLGSQHIAGPRTG*CYSSPRAQPTNGIV Trigger: CACAATGCCATTTGTAGGCTGGGCCCTGGGAGAAGAATAACATCACCCAGTTCTGGGCCCAGCAATATGTTGTGATCCCAACTGGAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CCA 90 bp | AAACTTTTTCCAGTTGGGATCACAACATATTGCTGGGCCCAGAACTaGGTGATGTTATTCTTCTCCCAGGGCCCAGCCTACAAATGGCAT | + |
Preference number: 5 (lower is better) Translates to: KLFPVGITTYCWAQN*VMLFFSQGPAYKWH Trigger: ATGCCATTTGTAGGCTGGGCCCTGGGAGAAGAATAACATCACCCAGTTCTGGGCCCAGCAATATGTTGTGATCCCAACTGGAAAAAGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS GCA 90 bp | GCATTAAGTCTAGCACTTAATGATGTGACTGTCCTATCTTGTTTGTaGCCTGCCCTGAGGAAGCACTGTGACATTACTGGCCTAAGTAAA | + |
Preference number: 5 (lower is better) Translates to: ALSLALNDVTVLSCL*PALRKHCDITGLSK Trigger: TTTACTTAGGCCAGTAATGTCACAGTGCTTCCTCAGGGCAGGGCACAAACAAGATAGGACAGTCACATCATTAAGTGCTAGACTTAATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS TCA 90 bp | CAGCTGATAGAATTGTCACCCTCACACATAGACAGTGCTTACTGGTaGGGTCCTAAGTCTCATACACAAATGCAATCCAGACTTGGAATT | + |
Preference number: 5 (lower is better) Translates to: QLIELSPSHIDSAYW*GPKSHTQMQSRLGI Trigger: AATTCCAAGTCTGGATTGCATTTGTGTATGAGACTTAGGACCTCACCAGTAAGCACTGTCTATGTGTGAGGGTGACAATTCTATCAGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649157.1 |
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CDS CCA 90 bp | CATATCTTGACTCCCAGTAAAAGATTCATCATTGTGCTTATAATTTaGACACAGATATATGGCACAATACAACCTGGCTGTTGGGCCCAG | + |
Preference number: 5 (lower is better) Translates to: HILTPSKRFIIVLII*TQIYGTIQPGCWAQ Trigger: CTGGGCCCAACAGCCAGGTTGTATTGTGCCATATATCTGTGTCCAAATTATAAGCACAATGATGAATCTTTTACTGGGAGTCAAGATATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441691.1 |
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CDS CCA 90 bp | CATATCTTGACTCCCAGTAAAAGATTCATCATTGTGCTTATAATTTaGACACAGATATATGGCACAATACAACCTGCAGATTGTGTTCTG | + |
Preference number: 5 (lower is better) Translates to: HILTPSKRFIIVLII*TQIYGTIQPADCVL Trigger: CAGAACACAATCTGCAGGTTGTATTGTGCCATATATCTGTGTCCAAATTATAAGCACAATGATGAATCTTTTACTGGGAGTCAAGATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451440.1 |
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CDS CAA 90 bp | CAGTGGCCCCCATGGGCACAGCCAAGGCAGGAGAGTGACATCACCTaGGCCCTGGGCTCAGCAATGGGTCACAATCTCTCCAGTGGGCAG | + |
Preference number: 6 (lower is better) Translates to: QWPPWAQPRQESDIT*ALGSAMGHNLSSGQ Trigger: CTGCCCACTGGAGAGATTGTGACCCATTGCTGAGCCCAGGGCCAAGGTGATGTCACTCTCCTGCCTTGGCTGTGCCCATGGGGGCCACTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441691.1 |
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CDS TCA 72 bp | ACAGTGGCCCCCATGGGCACAGCCAAGGCAGGAGAGTaGCATCACCTTGGCCCTGGGCTCAGCAATGGGTCA | + |
Preference number: 6 (lower is better) Translates to: TVAPMGTAKAGE*HHLGPGLSNGS Trigger: TGACCCATTGCTGAGCCCAGGGCCAAGGTGATGTCACTCTCCTGCCTTGGCTGTGCCCATGGGGGCCACTGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441691.1 |
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CDS CCA 72 bp | CACAGCCAAGGCAGGAGAGTGACATCACCTTGGCCCTaGGCTCAGCAATGGGTCACAATCTCTCCAGTGGGC | + |
Preference number: 6 (lower is better) Translates to: HSQGRRVTSPWP*AQQWVTISPVG Trigger: GCCCACTGGAGAGATTGTGACCCATTGCTGAGCCCAGGGCCAAGGTGATGTCACTCTCCTGCCTTGGCTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441691.1 |
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CDS CCA 72 bp | CATGGGCACAGCCAAGGCAGGAGAGTGACATCACCTTaGCCCTGGGCTCAGCAATGGGTCACAATCTCTCCA | + |
Preference number: 6 (lower is better) Translates to: HGHSQGRRVTSP*PWAQQWVTISP Trigger: TGGAGAGATTGTGACCCATTGCTGAGCCCAGGGCCAAGGTGATGTCACTCTCCTGCCTTGGCTGTGCCCATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441691.1 |
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CDS CCA 72 bp | GGTGCTGAGCCAAGTGAAATGTTCCAATGCCCTCTGTaGGCAGGGCCCAGGCAGAAGAGTAGAGTCACATCA | + |
Preference number: 6 (lower is better) Translates to: GAEPSEMFQCPL*AGPRQKSRVTS Trigger: TGATGTGACTCTACTCTTCTGCCTGGGCCCTGCCCACAGAGGGCATTGGAACATTTCACTTGGCTCAGCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CCA 72 bp | AGGGCCCAGCCTACAAATGGCATTGTGGCATCTCTCTaGGCCCACTGGCTAGGTGATGTGACTCTGCTTTTC | + |
Preference number: 6 (lower is better) Translates to: RAQPTNGIVASL*AHWLGDVTLLF Trigger: GAAAAGCAGAGTCACATCACCTAGCCAGTGGGCCCAGAGAGATGCCACAATGCCATTTGTAGGCTGGGCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CCA 72 bp | GTGATGTTATTCTTCTCCCAGGGCCCAGCCTACAAATaGCATTGTGGCATCTCTCTGGGCCCACTGGCTAGG | + |
Preference number: 6 (lower is better) Translates to: VMLFFSQGPAYK*HCGISLGPLAR Trigger: CCTAGCCAGTGGGCCCAGAGAGATGCCACAATGCCATTTGTAGGCTGGGCCCTGGGAGAAGAATAACATCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CAA 90 bp | CCCTTAGGGCAAGGCTCATGCAGGAGTGTCACGTCATCCAGGTGTTaGGTCCAGGCATATGTCATAATCCCTCCTGAAGGCAGCACCTGT | + |
Preference number: 6 (lower is better) Translates to: PLGQGSCRSVTSSRC*VQAYVIIPPEGSTC Trigger: ACAGGTGCTGCCTTCAGGAGGGATTATGACATATGCCTGGACCAAACACCTGGATGACGTGACACTCCTGCATGAGCCTTGCCCTAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649157.1 |
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CDS TCA 72 bp | TGGCATTGTGGCATCTCTCTGGGCCCACTGGCTAGGTaGTGTGACTCTGCTTTTCTGCCTGGACACTTTCCA | + |
Preference number: 6 (lower is better) Translates to: WHCGISLGPLAR*CDSAFLPGHFP Trigger: TGGAAAGTGTCCAGGCAGAAAAGCAGAGTCACATCACCTAGCCAGTGGGCCCAGAGAGATGCCACAATGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS GCA 72 bp | AAGCAGCTAGGTGATATGACTCTCCTGAATGGGCCCTaGTCTCAGAGAGGATTTTCACCCATCGCTGGGCCA | + |
Preference number: 6 (lower is better) Translates to: KQLGDMTLLNGP*SQRGFSPIAGP Trigger: TGGCCCAGCGATGGGTGAAAATCCTCTCTGAGAGCAGGGCCCATTCAGGAGAGTCATATCACCTAGCTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CCA 72 bp | CCAGTTGGGATCACAACATATTGCTGGGCCCAGAACTaGGTGATGTTATTCTTCTCCCAGGGCCCAGCCTAC | + |
Preference number: 6 (lower is better) Translates to: PVGITTYCWAQN*VMLFFSQGPAY Trigger: GTAGGCTGGGCCCTGGGAGAAGAATAACATCACCCAGTTCTGGGCCCAGCAATATGTTGTGATCCCAACTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CAA 72 bp | CAAGGCTCATGCAGGAGTGTCACGTCATCCAGGTGTTaGGTCCAGGCATATGTCATAATCCCTCCTGAAGGC | + |
Preference number: 6 (lower is better) Translates to: QGSCRSVTSSRC*VQAYVIIPPEG Trigger: GCCTTCAGGAGGGATTATGACATATGCCTGGACCAAACACCTGGATGACGTGACACTCCTGCATGAGCCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649157.1 |
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CDS TCA 72 bp | GAGGATTTTCACCCATCGCTGGGCCAATCATATAGGTaGTGTGTCTCTCCTCTGTTGCCTGGACCCTGTGTT | + |
Preference number: 6 (lower is better) Translates to: EDFHPSLGQSYR*CVSPLLPGPCV Trigger: AACACAGGGTCCAGGCAACAGAGGAGAGACACATCACCTATATGATTGGCCCAGCGATGGGTGAAAATCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647881.1 |
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CDS GCA 72 bp | CCAACATGTAAAAATATCCCCTTAGGGCAAGGCTCATaGAGGAGTGTCACGTCATCCAGGTGTTTGGTCCAG | + |
Preference number: 6 (lower is better) Translates to: PTCKNIPLGQGS*RSVTSSRCLVQ Trigger: CTGGACCAAACACCTGGATGACGTGACACTCCTGCATGAGCCTTGCCCTAAGGGGATATTTTTACATGTTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649157.1 |
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CDS TCA 72 bp | GCTCTCATGGCAGGATGCAATCCACTGTTGAGATTGTaGCTCATGTACTTGGGCCTAAGTCTCAGGAGTTGT | + |
Preference number: 6 (lower is better) Translates to: ALMAGCNPLLRL*LMYLGLSLRSC Trigger: ACAACTCCTGAGACTTAGGCCCAAGTACATGAGTCACAATCTCAACAGTGGATTGCATCCTGCCATGAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS GCA 72 bp | CTAGCACTTAATGATGTGACTGTCCTATCTTGTTTGTaGCCTGCCCTGAGGAAGCACTGTGACATTACTGGC | + |
Preference number: 6 (lower is better) Translates to: LALNDVTVLSCL*PALRKHCDITG Trigger: GCCAGTAATGTCACAGTGCTTCCTCAGGGCAGGGCACAAACAAGATAGGACAGTCACATCATTAAGTGCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS TCA 72 bp | AGGGCCATGGGTAAGGTCCTGGGTCTTCTACTTGTATaGAGATCACAGAGGATTATGACACCCATGCGTATT | + |
Preference number: 6 (lower is better) Translates to: RAMGKVLGLLLV*RSQRIMTPMRI Trigger: AATACGCATGGGTGTCATAATCCTCTGTGATCTTCATACAAGTAGAAGACCCAGGACCTTACCCATGGCCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CCA 72 bp | GTGATTCTCCTCTCTTGTCTGGAAACTTTTTCCAGTTaGGATCACAACATATTGCTGGGCCCAGAACTGGGT | + |
Preference number: 6 (lower is better) Translates to: VILLSCLETFSS*DHNILLGPELG Trigger: ACCCAGTTCTGGGCCCAGCAATATGTTGTGATCCCAACTGGAAAAAGTTTCCAGACAAGAGAGGAGAATCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CAA 72 bp | TTGGCCCTGTGCAAAGGGTGCATTGTGATATTTCACTaGGCCAAGCAGCTAGGTGATATGACTCTCCTGAAT | + |
Preference number: 6 (lower is better) Translates to: LALCKGCIVIFH*AKQLGDMTLLN Trigger: ATTCAGGAGAGTCATATCACCTAGCTGCTTGGCCAAGTGAAATATCACAATGCACCCTTTGCACAGGGCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CAA 90 bp | CTAGCATTAAGTCTAGCACTTAATGATGTGACTGTCCTATCTTGTTaGTGCCCTGCCCTGAGGAAGCACTGTGACATTACTGGCCTAAGT | + |
Preference number: 6 (lower is better) Translates to: LALSLALNDVTVLSC*CPALRKHCDITGLS Trigger: ACTTAGGCCAGTAATGTCACAGTGCTTCCTCAGGGCAGGGCACAAACAAGATAGGACAGTCACATCATTAAGTGCTAGACTTAATGCTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS GCA 72 bp | TGGGCCAATCATATAGGTGATGTGTCTCTCCTCTGTTaGCTGGACCCTGCCCAAAGTAAGAATTGTAATGTA | + |
Preference number: 6 (lower is better) Translates to: WANHIGDVSLLC*LDPAQSKNCNV Trigger: TACATTACAATTCTTACTTTGGGCAGGGTCCAGGCAACAGAGGAGAGACACATCACCTATATGATTGGCCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649157.1 |
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CDS CCA 72 bp | TGGAAACTTTTTCCAGTTGGGATCACAACATATTGCTaGGCCCAGAACTGGGTGATGTTATTCTTCTCCCAG | + |
Preference number: 6 (lower is better) Translates to: WKLFPVGITTYC*AQNWVMLFFSQ Trigger: CTGGGAGAAGAATAACATCACCCAGTTCTGGGCCCAGCAATATGTTGTGATCCCAACTGGAAAAAGTTTCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CAA 72 bp | TTGGACACAGATATATGGCACAATACAACCTGCAGATaGTGTTCTGATAGGGAACTCACAGCCTCACAGGTC | + |
Preference number: 6 (lower is better) Translates to: LDTDIWHNTTCR*CSDRELTASQV Trigger: GACCTGTGAGGCTGTGAGTTCCCTATCAGAACACAATCTGCAGGTTGTATTGTGCCATATATCTGTGTCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451440.1 |
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CDS CAA 72 bp | TATACCTGGGCCAAGCACCTAGGTGATGTGACTATTTaGCCTGGCCACTTCCCTCAAAGGAATTGTAATTGT | + |
Preference number: 6 (lower is better) Translates to: YTWAKHLGDVTI*PGHFPQRNCNC Trigger: ACAATTACAATTCCTTTGAGGGAAGTGGCCAGGCAAAATAGTCACATCACCTAGGTGCTTGGCCCAGGTATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CAA 72 bp | GTGACTCATGTACTTGGGCCTAAGTCTCAGGAGTTGTaGACTCTTACACTTGGAGTGGGAAAATGTGTGGAA | + |
Preference number: 6 (lower is better) Translates to: VTHVLGPKSQEL*TLTLGVGKCVE Trigger: TTCCACACATTTTCCCACTCCAAGTGTAAGAGTCAACAACTCCTGAGACTTAGGCCCAAGTACATGAGTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CAA 72 bp | GACTCTCATACCTGGATCCAGCTAAGAGAACAGATTTaGACTCTGATATCTAGGCTTAGGGCAACAGGCAAG | + |
Preference number: 6 (lower is better) Translates to: DSHTWIQLREQI*TLISRLRATGK Trigger: CTTGCCTGTTGCCCTAAGCCTAGATATCAGAGTCAAAATCTGTTCTCTTAGCTGGATCCAGGTATGAGAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649157.1 |
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CDS CCA 72 bp | TTGGCCCAGGTATATGGCACAATTTTGTTTGTGAACTaGACCCAGTCTGCAGAGTCAAATCACTCACATGTT | + |
Preference number: 6 (lower is better) Translates to: LAQVYGTILFVN*TQSAESNHSHV Trigger: AACATGTGAGTGATTTGACTCTGCAGACTGGGTCCAGTTCACAAACAAAATTGTGCCATATACCTGGGCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000441691.1 ENST00000451440.1 |
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CDS CCA 72 bp | CACCTGACTGGCCCAGAAATTTGTCATAATCTTCACTaGGACAGAACACAGGAAGAAAAGGAGAGTCACATT | + |
Preference number: 6 (lower is better) Translates to: HLTGPEICHNLH*DRTQEEKESHI Trigger: AATGTGACTCTCCTTTTCTTCCTGTGTTCTGTCCCAGTGAAGATTATGACAAATTTCTGGGCCAGTCAGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451440.1 ENST00000649157.1 |
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CDS CAA 72 bp | GGACCCTGTGTTTTGGGCCCAGATATACATCACAATTaGAAGTCTGGGCAGGAACCAGGAAGAAAAATCATA | + |
Preference number: 6 (lower is better) Translates to: GPCVLGPDIHHN*KSGQEPGRKII Trigger: TATGATTTTTCTTCCTGGTTCCTGCCCAGACTTCAAATTGTGATGTATATCTGGGCCCAAAACACAGGGTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647881.1 |
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CDS CAA 72 bp | ATTGTGACTCATGTACTTGGGCCTAAGTCTCAGGAGTaGTTGACTCTTACACTTGGAGTGGGAAAATGTGTG | + |
Preference number: 6 (lower is better) Translates to: IVTHVLGPKSQE*LTLTLGVGKCV Trigger: CACACATTTTCCCACTCCAAGTGTAAGAGTCAACAACTCCTGAGACTTAGGCCCAAGTACATGAGTCACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CAA 90 bp | CTATTGTCTTGGTCTAGCTATGAGAGTTATTACCTTACCTGTGTTTaGGGCCCAGATATACATCACAATTTGAAGTCTGGGCAGGAACCA | + |
Preference number: 6 (lower is better) Translates to: LLSWSSYESYYLTCV*GPDIHHNLKSGQEP Trigger: TGGTTCCTGCCCAGACTTCAAATTGTGATGTATATCTGGGCCCAAAACACAGGTAAGGTAATAACTCTCATAGCTAGACCAAGACAATAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649157.1 |
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CDS CAA 72 bp | CTTACCTGTGTTTTGGGCCCAGATATACATCACAATTaGAAGTCTGGGCAGGAACCAGGAAGAAAAATCATA | + |
Preference number: 6 (lower is better) Translates to: LTCVLGPDIHHN*KSGQEPGRKII Trigger: TATGATTTTTCTTCCTGGTTCCTGCCCAGACTTCAAATTGTGATGTATATCTGGGCCCAAAACACAGGTAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649157.1 |
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CDS CAA 72 bp | TGGTCTAGCTATGAGAGTTATTACCTTACCTGTGTTTaGGGCCCAGATATACATCACAATTTGAAGTCTGGG | + |
Preference number: 6 (lower is better) Translates to: WSSYESYYLTCV*GPDIHHNLKSG Trigger: CCCAGACTTCAAATTGTGATGTATATCTGGGCCCAAAACACAGGTAAGGTAATAACTCTCATAGCTAGACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649157.1 |
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CDS GCA 72 bp | TATAATTTGGACACAGATATATGGCACAATACAACCTaGAGATTGTGTTCTGATAGGGAACTCACAGCCTCA | + |
Preference number: 6 (lower is better) Translates to: YNLDTDIWHNTT*RLCSDRELTAS Trigger: TGAGGCTGTGAGTTCCCTATCAGAACACAATCTGCAGGTTGTATTGTGCCATATATCTGTGTCCAAATTATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451440.1 |
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CDS TCA 72 bp | GATTGTGAAATCTCTTGGCTTATCATCATGATGATGTaGTTCTCCTCTCTTGTCTGGAAACTTTTTCCAGTT | + |
Preference number: 6 (lower is better) Translates to: DCEISWLIIMMM*FSSLVWKLFPV Trigger: AACTGGAAAAAGTTTCCAGACAAGAGAGGAGAATCACATCATCATGATGATAAGCCAAGAGATTTCACAATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000647881.1 ENST00000649157.1 |
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CDS CCA 72 bp | AGCCTAGCTACAAAAGTCAAAATCTCTCTATTGTCTTaGTCTAGCTATGAGAGTTATTACCTTACCTGTGTT | + |
Preference number: 6 (lower is better) Translates to: SLATKVKISLLS*SSYESYYLTCV Trigger: AACACAGGTAAGGTAATAACTCTCATAGCTAGACCAAGACAATAGAGAGATTTTGACTTTTGTAGCTAGGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649157.1 |
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CDS CAA 72 bp | GTTCTAAGCCTAGCTACAAAAGTCAAAATCTCTCTATaGTCTTGGTCTAGCTATGAGAGTTATTACCTTACC | + |
Preference number: 6 (lower is better) Translates to: VLSLATKVKISL*SWSSYESYYLT Trigger: GGTAAGGTAATAACTCTCATAGCTAGACCAAGACAATAGAGAGATTTTGACTTTTGTAGCTAGGCTTAGAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649157.1 |