Pregenerated sensors for LINC00957 (Homo sapiens)
Ensembl gene IDs: ENSG00000235314Ensembl transcript IDs: ENST00000416824.1, ENST00000441052.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTGCGAGGGGTCGGGGGTTGCCAAGGCCGCCCATCCTGTCGGTGGTaGATCGCGGGACCTTCCAACCCAGGTCTGCTTACTCTCAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: LRGVGGCQGRPSCRW*IAGPSNPGLLTLRL Trigger: CAGCCTGAGAGTAAGCAGACCTGGGTTGGAAGGTCCCGCGATTCACCACCGACAGGATGGGCGGCCTTGGCAACCCCCGACCCCTCGCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000416824.1 ENST00000441052.1 |
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| CDS CCA 90 bp | TTCATGAATAAACAGTTTGCCCTGCTTGTGTACCTGTCCCCCTCCTaGGCGGATACGGCAGGCAAACGGTGCAAGGGCGGCTGCCGGGAG | + |
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Preference number: 5 (lower is better) Translates to: FMNKQFALLVYLSPS*ADTAGKRCKGGCRE Trigger: CTCCCGGCAGCCGCCCTTGCACCGTTTGCCTGCCGTATCCGCCCAGGAGGGGGACAGGTACACAAGCAGGGCAAACTGTTTATTCATGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441052.1 |
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| CDS TCA 72 bp | GTCGGGGGTTGCCAAGGCCGCCCATCCTGTCGGTGGTaGATCGCGGGACCTTCCAACCCAGGTCTGCTTACT | + |
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Preference number: 6 (lower is better) Translates to: VGGCQGRPSCRW*IAGPSNPGLLT Trigger: AGTAAGCAGACCTGGGTTGGAAGGTCCCGCGATTCACCACCGACAGGATGGGCGGCCTTGGCAACCCCCGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000416824.1 ENST00000441052.1 |
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| CDS GCA 72 bp | GTCGGTGGTGAATCGCGGGACCTTCCAACCCAGGTCTaGTTACTCTCAGGCTGCACCTATGTGCCCGGCACC | + |
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Preference number: 6 (lower is better) Translates to: VGGESRDLPTQV*LLSGCTYVPGT Trigger: GGTGCCGGGCACATAGGTGCAGCCTGAGAGTAAGCAGACCTGGGTTGGAAGGTCCCGCGATTCACCACCGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416824.1 ENST00000441052.1 |
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| CDS GCA 72 bp | TGTCCGAGTTCCATCTCATGGATAAGGGAACAGGCCTaGGAGGGGTCGGGGGTTGCCAAGGCCGCCCATCCT | + |
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Preference number: 6 (lower is better) Translates to: CPSSISWIREQA*EGSGVAKAAHP Trigger: AGGATGGGCGGCCTTGGCAACCCCCGACCCCTCGCAGGCCTGTTCCCTTATCCATGAGATGGAACTCGGACA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000416824.1 ENST00000441052.1 |
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| CDS CCA 72 bp | AAACAGTTTGCCCTGCTTGTGTACCTGTCCCCCTCCTaGGCGGATACGGCAGGCAAACGGTGCAAGGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: KQFALLVYLSPS*ADTAGKRCKGG Trigger: GCCGCCCTTGCACCGTTTGCCTGCCGTATCCGCCCAGGAGGGGGACAGGTACACAAGCAGGGCAAACTGTTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441052.1 |
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| CDS CCA 72 bp | TCTTTTCTAATGAACCTGAGGCAGGAGAATAGGGGCTaGAAGCAGGCAACAGAACGCCAATGCACACTAACC | + |
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Preference number: 6 (lower is better) Translates to: SFLMNLRQENRG*KQATERQCTLT Trigger: GGTTAGTGTGCATTGGCGTTCTGTTGCCTGCTTCCAGCCCCTATTCTCCTGCCTCAGGTTCATTAGAAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000441052.1 |
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| CDS CAA 72 bp | TCTGAAGGTGAGGTTGCATGCTATATTGTCCTCATCTaGCAAATGACAACACTGAGCTTCAGAGAGAGCGAC | + |
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Preference number: 6 (lower is better) Translates to: SEGEVACYIVLI*QMTTLSFRESD Trigger: GTCGCTCTCTCTGAAGCTCAGTGTTGTCATTTGCAAGATGAGGACAATATAGCATGCAACCTCACCTTCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441052.1 |
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| CDS TCA 72 bp | TCTAGTCATTCATTCACTCACTCATTCATTCATTCATaGATAAACAGTTTGCCCTGCTTGTGTACCTGTCCC | + |
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Preference number: 6 (lower is better) Translates to: SSHSFTHSFIHS*INSLPCLCTCP Trigger: GGGACAGGTACACAAGCAGGGCAAACTGTTTATTCATGAATGAATGAATGAGTGAGTGAATGAATGACTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441052.1 |
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