Pregenerated sensors for LINC00933 (Homo sapiens)
Ensembl gene IDs: ENSG00000259728Ensembl transcript IDs: ENST00000557887.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCACACTGGCACCCAGAGAAAGAGAGAGCCAAAGCTGTCCATCTTaGAGGCAGATGGGAGGGAGCCAGGACACAGCTGGGCTTGCTCAT | + |
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Preference number: 5 (lower is better) Translates to: STLAPRERESQSCPS*RQMGGSQDTAGLAH Trigger: ATGAGCAAGCCCAGCTGTGTCCTGGCTCCCTCCCATCTGCCTGCAAGATGGACAGCTTTGGCTCTCTCTTTCTCTGGGTGCCAGTGTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS TCA 90 bp | AGACATGGCTCTTCGGGGCTTGGCTCAGTTTGGCTTAACATGGCTTaGCATGATGAGCACACTGGCACCCAGAGAAAGAGAGAGCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: RHGSSGLGSVWLNMA*HDEHTGTQRKREPK Trigger: CTTTGGCTCTCTCTTTCTCTGGGTGCCAGTGTGCTCATCATGTCAAGCCATGTTAAGCCAAACTGAGCCAAGCCCCGAAGAGCCATGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS TCA 90 bp | AGCACTTGGGGGCTGAAGCGGGCAGATCACTTGAGTTCAGGAGTTTaGGACCAGCCTGGCCAACATACAAAACCACATAGTAAGGTACAT | + |
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Preference number: 5 (lower is better) Translates to: STWGLKRADHLSSGV*DQPGQHTKPHSKVH Trigger: ATGTACCTTACTATGTGGTTTTGTATGTTGGCCAGGCTGGTCTCAAACTCCTGAACTCAAGTGATCTGCCCGCTTCAGCCCCCAAGTGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS GCA 72 bp | GATGGGAGGGAGCCAGGACACAGCTGGGCTTGCTCATaGCCAGAGAGAGAAGGAGTTAAGCTGCTGACCCTG | + |
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Preference number: 6 (lower is better) Translates to: DGREPGHSWACS*PEREGVKLLTL Trigger: CAGGGTCAGCAGCTTAACTCCTTCTCTCTCTGGGCATGAGCAAGCCCAGCTGTGTCCTGGCTCCCTCCCATC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS CCA 72 bp | TTCTGCTCACCCACCCACTCCCCTCAGACTTCACCATaGGCTGGACCTGGACCCTGGGATCTGACACACATC | + |
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Preference number: 6 (lower is better) Translates to: FCSPTHSPQTSP*AGPGPWDLTHI Trigger: GATGTGTGTCAGATCCCAGGGTCCAGGTCCAGCCCATGGTGAAGTCTGAGGGGAGTGGGTGGGTGAGCAGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS CCA 72 bp | GAGAGAGCTGGCTGCGCAGCTATGTGTAGGGGCAGCTaGCTCAAGCTGCTGAGACAGGCGAACAGTGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: ERAGCAAMCRGS*LKLLRQANSGR Trigger: TCTTCCACTGTTCGCCTGTCTCAGCAGCTTGAGCCAGCTGCCCCTACACATAGCTGCGCAGCCAGCTCTCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS CCA 72 bp | ATGGCTCTTCGGGGCTTGGCTCAGTTTGGCTTAACATaGCTTGACATGATGAGCACACTGGCACCCAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: MALRGLAQFGLT*LDMMSTLAPRE Trigger: TTCTCTGGGTGCCAGTGTGCTCATCATGTCAAGCCATGTTAAGCCAAACTGAGCCAAGCCCCGAAGAGCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS GCA 72 bp | TTGTCTGTAAAAGGTATAACTGCCCTGTTGATGCCGTaGATAAGAGACATGGCTCTTCGGGGCTTGGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LSVKGITALLMP*IRDMALRGLAQ Trigger: CTGAGCCAAGCCCCGAAGAGCCATGTCTCTTATGCACGGCATCAACAGGGCAGTTATACCTTTTACAGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS CAA 72 bp | ATGCCACTATTGTCTGTAAAAGGTATAACTGCCCTGTaGATGCCGTGCATAAGAGACATGGCTCTTCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: MPLLSVKGITAL*MPCIRDMALRG Trigger: GCCCCGAAGAGCCATGTCTCTTATGCACGGCATCAACAGGGCAGTTATACCTTTTACAGACAATAGTGGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS GCA 72 bp | TGGCTTTATGCCACTATTGTCTGTAAAAGGTATAACTaGCCTGTTGATGCCGTGCATAAGAGACATGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: WLYATIVCKRYN*PVDAVHKRHGS Trigger: AGAGCCATGTCTCTTATGCACGGCATCAACAGGGCAGTTATACCTTTTACAGACAATAGTGGCATAAAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS CCA 72 bp | ATACAAAACCACATAGTAAGGTACATAGATGTGCTTTaGTCAAGGAATAGGCCGAGGTGGATATCTAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: IQNHIVRYIDVL*SRNRPRWISRP Trigger: AGGCCTAGATATCCACCTCGGCCTATTCCTTGACCAAAGCACATCTATGTACCTTACTATGTGGTTTTGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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| CDS CCA 72 bp | ATTTACACAGAGACAAAACTGAAATTCAGAGAGTTCTaGTTTCTCAAGGCACACCACTGGTCAATAAACACA | + |
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Preference number: 6 (lower is better) Translates to: IYTETKLKFREF*FLKAHHWSINT Trigger: TGTGTTTATTGACCAGTGGTGTGCCTTGAGAAACCAGAACTCTCTGAATTTCAGTTTTGTCTCTGTGTAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557887.1 |
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