Pregenerated sensors for LINC00919 (Homo sapiens)
Ensembl gene IDs: ENSG00000260268Ensembl transcript IDs: ENST00000561513.5, ENST00000565742.1, ENST00000655537.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCTAGGACAGGGTTTCTTCTCCTTAGCACTATGGACATTGTGGACTaGATAATTCTTTGTTGTGGCAGTGGCTGTCCTGGGCATTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: PRTGFLLLSTMDIVD*IILCCGSGCPGHCR Trigger: CCTACAATGCCCAGGACAGCCACTGCCACAACAAAGAATTATGCAGTCCACAATGTCCATAGTGCTAAGGAGAAGAAACCCTGTCCTAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS TCA 90 bp | ATTCCTAGTGGATACCCCCAGTGGATTCACTCATTAGAGGTTGTCTaGATGCGTATTATTTCCCAGGAGCATGTCAATTACCCCACTCTC | + |
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Preference number: 5 (lower is better) Translates to: IPSGYPQWIHSLEVV*MRIISQEHVNYPTL Trigger: GAGAGTGGGGTAATTGACATGCTCCTGGGAAATAATACGCATTCAGACAACCTCTAATGAGTGAATCCACTGGGGGTATCCACTAGGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS TCA 90 bp | ACATATTGCTCCTGTCAACTTCTGGGTATTTTCCCCACAATCGTTTaGAATCACTTGAAATTAGTCTTGTCAGCATCCAACCTTGACCCT | + |
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Preference number: 5 (lower is better) Translates to: TYCSCQLLGIFPTIV*NHLKLVLSASNLDP Trigger: AGGGTCAAGGTTGGATGCTGACAAGACTAATTTCAAGTGATTTCAAACGATTGTGGGGAAAATACCCAGAAGTTGACAGGAGCAATATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CCA 90 bp | GCCTCCGGGTATCTCATCTTCCTTGGAAAGGTCTTTATATCACTCTaGGATTATGATATTCTTATACTTTCAGTATTAACATGGCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: ASGYLIFLGKVFISL*DYDILILSVLTWLN Trigger: GTTCAGCCATGTTAATACTGAAAGTATAAGAATATCATAATCCCAGAGTGATATAAAGACCTTTCCAAGGAAGATGAGATACCCGGAGGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS TCA 90 bp | GTATCTCATCTTCCTTGGAAAGGTCTTTATATCACTCTGGGATTATaGTATTCTTATACTTTCAGTATTAACATGGCTGAACCGCAACCG | + |
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Preference number: 5 (lower is better) Translates to: VSHLPWKGLYITLGL*YSYTFSINMAEPQP Trigger: CGGTTGCGGTTCAGCCATGTTAATACTGAAAGTATAAGAATATCATAATCCCAGAGTGATATAAAGACCTTTCCAAGGAAGATGAGATAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CCA 72 bp | GCTGCTCAAATTCTGGACCACAAACTTGGGCATTGGTaGTCGTTTTCTATTCCTAGTGGATACCCCCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: AAQILDHKLGHW*SFSIPSGYPQW Trigger: CCACTGGGGGTATCCACTAGGAATAGAAAACGACCACCAATGCCCAAGTTTGTGGTCCAGAATTTGAGCAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CAA 72 bp | AGAAGTGGGGCCCATGACACAGGGGGAGACTCTACTTaGTTAGATCGCTGCTCAAATTCTGGACCACAAACT | + |
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Preference number: 6 (lower is better) Translates to: RSGAHDTGGDST*LDRCSNSGPQT Trigger: AGTTTGTGGTCCAGAATTTGAGCAGCGATCTAACAAAGTAGAGTCTCCCCCTGTGTCATGGGCCCCACTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CAA 90 bp | CTTTGCTTAAGAAGTGGGGCCCATGACACAGGGGGAGACTCTACTTaGTTAGATCGCTGCTCAAATTCTGGACCACAAACTTGGGCATTG | + |
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Preference number: 6 (lower is better) Translates to: LCLRSGAHDTGGDST*LDRCSNSGPQTWAL Trigger: CAATGCCCAAGTTTGTGGTCCAGAATTTGAGCAGCGATCTAACAAAGTAGAGTCTCCCCCTGTGTCATGGGCCCCACTTCTTAAGCAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS TCA 72 bp | ATGAGGCATTCTTCTTTGCTTAAGAAGTGGGGCCCATaGCACAGGGGGAGACTCTACTTTGTTAGATCGCTG | + |
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Preference number: 6 (lower is better) Translates to: MRHSSLLKKWGP*HRGRLYFVRSL Trigger: CAGCGATCTAACAAAGTAGAGTCTCCCCCTGTGTCATGGGCCCCACTTCTTAAGCAAAGAAGAATGCCTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS GCA 72 bp | CATGACACAGGGGGAGACTCTACTTTGTTAGATCGCTaGTCAAATTCTGGACCACAAACTTGGGCATTGGTG | + |
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Preference number: 6 (lower is better) Translates to: HDTGGDSTLLDR*SNSGPQTWALV Trigger: CACCAATGCCCAAGTTTGTGGTCCAGAATTTGAGCAGCGATCTAACAAAGTAGAGTCTCCCCCTGTGTCATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CCA 72 bp | ATCGCTGCTCAAATTCTGGACCACAAACTTGGGCATTaGTGGTCGTTTTCTATTCCTAGTGGATACCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: IAAQILDHKLGH*WSFSIPSGYPQ Trigger: CTGGGGGTATCCACTAGGAATAGAAAACGACCACCAATGCCCAAGTTTGTGGTCCAGAATTTGAGCAGCGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS TCA 72 bp | CAACCGATGACAGGAAATCGGATGCTTCTGACCCAGTaGGCAGAAGAACCCTTAAGGTCCACTATCAGTTAT | + |
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Preference number: 6 (lower is better) Translates to: QPMTGNRMLLTQ*AEEPLRSTISY Trigger: ATAACTGATAGTGGACCTTAAGGGTTCTTCTGCTCACTGGGTCAGAAGCATCCGATTTCCTGTCATCGGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561513.5 |
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| CDS CAA 90 bp | AGACTCTACTTTGTTAGATCGCTGCTCAAATTCTGGACCACAAACTaGGGCATTGGTGGTCGTTTTCTATTCCTAGTGGATACCCCCAGT | + |
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Preference number: 6 (lower is better) Translates to: RLYFVRSLLKFWTTN*GIGGRFLFLVDTPS Trigger: ACTGGGGGTATCCACTAGGAATAGAAAACGACCACCAATGCCCAAGTTTGTGGTCCAGAATTTGAGCAGCGATCTAACAAAGTAGAGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CCA 72 bp | GGGAGACTCTACTTTGTTAGATCGCTGCTCAAATTCTaGACCACAAACTTGGGCATTGGTGGTCGTTTTCTA | + |
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Preference number: 6 (lower is better) Translates to: GRLYFVRSLLKF*TTNLGIGGRFL Trigger: TAGAAAACGACCACCAATGCCCAAGTTTGTGGTCCAGAATTTGAGCAGCGATCTAACAAAGTAGAGTCTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CAA 72 bp | TGGACTGCAGTTGCTCTTTGTGAACTGTCAGATGCGTaGAGAGAATGGGCTTCTCCGGAGTGTATTTTATCT | + |
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Preference number: 6 (lower is better) Translates to: WTAVALCELSDA*REWASPECILS Trigger: AGATAAAATACACTCCGGAGAAGCCCATTCTCTCAACGCATCTGACAGTTCACAAAGAGCAACTGCAGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS TCA 72 bp | GGATACCCCCAGTGGATTCACTCATTAGAGGTTGTCTaGATGCGTATTATTTCCCAGGAGCATGTCAATTAC | + |
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Preference number: 6 (lower is better) Translates to: GYPQWIHSLEVV*MRIISQEHVNY Trigger: GTAATTGACATGCTCCTGGGAAATAATACGCATTCAGACAACCTCTAATGAGTGAATCCACTGGGGGTATCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS GCA 72 bp | GTGAGCAGAAGAACCCTTAAGGTCCACTATCAGTTATaGTGCCTTATGGTATATTATGCATGCGTGTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: VSRRTLKVHYQL*CLMVYYACVSA Trigger: TGCAGACACGCATGCATAATATACCATAAGGCAGCATAACTGATAGTGGACCTTAAGGGTTCTTCTGCTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561513.5 |
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| CDS GCA 72 bp | AGCAGAAGAACCCTTAAGGTCCACTATCAGTTATGCTaGCTTATGGTATATTATGCATGCGTGTCTGCACAT | + |
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Preference number: 6 (lower is better) Translates to: SRRTLKVHYQLC*LMVYYACVSAH Trigger: ATGTGCAGACACGCATGCATAATATACCATAAGGCAGCATAACTGATAGTGGACCTTAAGGGTTCTTCTGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561513.5 |
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| CDS CAA 72 bp | TTTGTTAGATCGCTGCTCAAATTCTGGACCACAAACTaGGGCATTGGTGGTCGTTTTCTATTCCTAGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: FVRSLLKFWTTN*GIGGRFLFLVD Trigger: ATCCACTAGGAATAGAAAACGACCACCAATGCCCAAGTTTGTGGTCCAGAATTTGAGCAGCGATCTAACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS TCA 72 bp | TGTTTCTGGTGTTTTGCTGAACCAAAGGTTTTCATTTaGACGCGTTCAAATCCTTCAGACTTCTCCTTCACA | + |
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Preference number: 6 (lower is better) Translates to: CFWCFAEPKVFI*TRSNPSDFSFT Trigger: TGTGAAGGAGAAGTCTGAAGGATTTGAACGCGTTCAAATGAAAACCTTTGGTTCAGCAAAACACCAGAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS TCA 72 bp | TCCTGTCAACTTCTGGGTATTTTCCCCACAATCGTTTaGAATCACTTGAAATTAGTCTTGTCAGCATCCAAC | + |
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Preference number: 6 (lower is better) Translates to: SCQLLGIFPTIV*NHLKLVLSASN Trigger: GTTGGATGCTGACAAGACTAATTTCAAGTGATTTCAAACGATTGTGGGGAAAATACCCAGAAGTTGACAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS GCA 72 bp | GGTCCACTATCAGTTATGCTGCCTTATGGTATATTATaGATGCGTGTCTGCACATGTATATACACAAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: GPLSVMLPYGIL*MRVCTCIYTKL Trigger: CAACTTTGTGTATATACATGTGCAGACACGCATGCATAATATACCATAAGGCAGCATAACTGATAGTGGACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561513.5 |
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| CDS CCA 72 bp | GAACCCTTAAGGTCCACTATCAGTTATGCTGCCTTATaGTATATTATGCATGCGTGTCTGCACATGTATATA | + |
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Preference number: 6 (lower is better) Translates to: EPLRSTISYAAL*YIMHACLHMYI Trigger: TATATACATGTGCAGACACGCATGCATAATATACCATAAGGCAGCATAACTGATAGTGGACCTTAAGGGTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561513.5 |
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| CDS CCA 72 bp | GTTGCTCTTTGTGAACTGTCAGATGCGTTGAGAGAATaGGCTTCTCCGGAGTGTATTTTATCTTTTGAATTT | + |
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Preference number: 6 (lower is better) Translates to: VALCELSDALRE*ASPECILSFEF Trigger: AAATTCAAAAGATAAAATACACTCCGGAGAAGCCCATTCTCTCAACGCATCTGACAGTTCACAAAGAGCAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CAA 90 bp | TTACTAAGCTTGTATCTTCACTCGTTAGGAAAGAGCAGGCTTTTGTaGATTAATTGCGCATTCCTTCTTCTTATATATTGCCTCAGTGCA | + |
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Preference number: 6 (lower is better) Translates to: LLSLYLHSLGKSRLL*INCAFLLLIYCLSA Trigger: TGCACTGAGGCAATATATAAGAAGAAGGAATGCGCAATTAATCAACAAAAGCCTGCTCTTTCCTAACGAGTGAAGATACAAGCTTAGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CAA 90 bp | TATTTACTAAGCTTGTATCTTCACTCGTTAGGAAAGAGCAGGCTTTaGTTGATTAATTGCGCATTCCTTCTTCTTATATATTGCCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: YLLSLYLHSLGKSRL*LINCAFLLLIYCLS Trigger: ACTGAGGCAATATATAAGAAGAAGGAATGCGCAATTAATCAACAAAAGCCTGCTCTTTCCTAACGAGTGAAGATACAAGCTTAGTAAATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CAA 72 bp | TTGTATCTTCACTCGTTAGGAAAGAGCAGGCTTTTGTaGATTAATTGCGCATTCCTTCTTCTTATATATTGC | + |
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Preference number: 6 (lower is better) Translates to: LYLHSLGKSRLL*INCAFLLLIYC Trigger: GCAATATATAAGAAGAAGGAATGCGCAATTAATCAACAAAAGCCTGCTCTTTCCTAACGAGTGAAGATACAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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| CDS CAA 72 bp | AGCTTGTATCTTCACTCGTTAGGAAAGAGCAGGCTTTaGTTGATTAATTGCGCATTCCTTCTTCTTATATAT | + |
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Preference number: 6 (lower is better) Translates to: SLYLHSLGKSRL*LINCAFLLLIY Trigger: ATATATAAGAAGAAGGAATGCGCAATTAATCAACAAAAGCCTGCTCTTTCCTAACGAGTGAAGATACAAGCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000561513.5 ENST00000565742.1 ENST00000655537.1 |
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