Pregenerated sensors for LINC00893 (Homo sapiens)
Ensembl gene IDs: ENSG00000241769Ensembl transcript IDs: ENST00000412882.5, ENST00000430173.1, ENST00000431025.1, ENST00000431214.5, ENST00000437981.5, ENST00000447209.5, ENST00000451969.1, ENST00000596412.6, ENST00000608342.5, ENST00000608355.1, ENST00000608616.5, ENST00000609161.5, ENST00000609314.5, ENST00000609651.5, ENST00000618757.4, ENST00000618820.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCAGTGCTAAAAGCCGGCGAGTCCCAGGGAAGCAGGACGAATTGGTaGGCCGACTGCCAGACCCGTGACCAGAGTGAAGGTGCAGCGCAG | + |
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Preference number: 5 (lower is better) Translates to: AVLKAGESQGSRTNW*ADCQTRDQSEGAAQ Trigger: CTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCGGCTCACCAATTCGTCCTGCTTCCCTGGGACTCGCCGGCTTTTAGCACTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000431214.5 ENST00000447209.5 ENST00000608342.5 ENST00000608616.5 ENST00000609161.5 ENST00000618757.4 ENST00000618820.1 |
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| CDS TCA 90 bp | GAACAAACCCAGGACTTGCTAAGGTGGCTGAACTCCGAAGACGGGTaGACGCTCAGCCAAGGCAGGTCTGTCATGCCAATGACACCAGCC | + |
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Preference number: 5 (lower is better) Translates to: EQTQDLLRWLNSEDG*TLSQGRSVMPMTPA Trigger: GGCTGGTGTCATTGGCATGACAGACCTGCCTTGGCTGAGCGTTCACCCGTCTTCGGAGTTCAGCCACCTTAGCAAGTCCTGGGTTTGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000451969.1 ENST00000609161.5 ENST00000618757.4 |
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| CDS GCA 90 bp | GGTTCCCAGCCACGCAGTAATGCAGCGTGTTCCTTCCCTTTCTTCTaGTGGAGTGATGTCAGAGGATGCCAGCCAGAACCAGGAAGATCT | + |
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Preference number: 5 (lower is better) Translates to: GSQPRSNAACSFPFF*WSDVRGCQPEPGRS Trigger: AGATCTTCCTGGTTCTGGCTGGCATCCTCTGACATCACTCCAGCAGAAGAAAGGGAAGGAACACGCTGCATTACTGCGTGGCTGGGAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412882.5 |
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| CDS TCA 90 bp | AAGACTCTGAAAGGTGGAGTGAAGGCAGATCAGACGGGGACCTTGTaGCCACGCAGTAATGCAGCGTGTTCCTTCCCTTTCTTCTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: KTLKGGVKADQTGTL*PRSNAACSFPFFCW Trigger: CCAGCAGAAGAAAGGGAAGGAACACGCTGCATTACTGCGTGGTCACAAGGTCCCCGTCTGATCTGCCTTCACTCCACCTTTCAGAGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000431025.1 ENST00000596412.6 ENST00000618757.4 |
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| CDS CCA 90 bp | TCGAACCCACGCAGTAATGCAGCGTGTTCCTTCCCTTTCTTCTGCTaGAGTGATGTCAGAGGATGCCAGCCAGAACCAGGAAGATCTCAA | + |
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Preference number: 5 (lower is better) Translates to: SNPRSNAACSFPFFC*SDVRGCQPEPGRSQ Trigger: TTGAGATCTTCCTGGTTCTGGCTGGCATCCTCTGACATCACTCCAGCAGAAGAAAGGGAAGGAACACGCTGCATTACTGCGTGGGTTCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437981.5 |
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| CDS GCA 90 bp | TGGAGAGGAAGTTCCTGGCAGGTGAGGAGATCCAGGCAGGGCGGATaGCTGGAAATGAAAACTCAGAGAACAGACAGTGGTGAGTATATT | + |
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Preference number: 5 (lower is better) Translates to: WRGSSWQVRRSRQGG*LEMKTQRTDSGEYI Trigger: AATATACTCACCACTGTCTGTTCTCTGAGTTTTCATTTCCAGGCATCCGCCCTGCCTGGATCTCCTCACCTGCCAGGAACTTCCTCTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000430173.1 ENST00000451969.1 ENST00000618757.4 |
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| CDS GCA 90 bp | ATATCGAACCCACGCAGTAATGCAGCGTGTTCCTTCCCTTTCTTCTaGTGGAGTGATGTCAGAGGATGCCAGCCAGAACCAGGAAGATCT | + |
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Preference number: 5 (lower is better) Translates to: ISNPRSNAACSFPFF*WSDVRGCQPEPGRS Trigger: AGATCTTCCTGGTTCTGGCTGGCATCCTCTGACATCACTCCAGCAGAAGAAAGGGAAGGAACACGCTGCATTACTGCGTGGGTTCGATAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437981.5 |
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| CDS GCA 90 bp | GATGTCGTCAGTGCGTGTCTTCGAGAATGCGAGATTCATAATGTTTaGTGTCTATATGCATGGCTGAGTACGTGCCTCCCGCGTACGTGC | + |
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Preference number: 5 (lower is better) Translates to: DVVSACLRECEIHNV*CLYAWLSTCLPRTC Trigger: GCACGTACGCGGGAGGCACGTACTCAGCCATGCATATAGACAGCAAACATTATGAATCTCGCATTCTCGAAGACACGCACTGACGACATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609314.5 |
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| CDS TCA 90 bp | GCAGGGCGGATGCCTGGAAATGAAAACTCAGAGAACAGACAGTGGTaGGTATATTTCCTGGATGACCCACAGGGGATTAATGAGAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: AGRMPGNENSENRQW*VYFLDDPQGINERP Trigger: TGGCCTCTCATTAATCCCCTGTGGGTCATCCAGGAAATATACTCACCACTGTCTGTTCTCTGAGTTTTCATTTCCAGGCATCCGCCCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000430173.1 ENST00000451969.1 ENST00000618757.4 |
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| CDS CCA 90 bp | GGAGTGATGTCAGAGGATGCCAGCCAGAACCAGGAAGATCTCAAATaGAATGACAGGATACAATCAAGAGATGTCAACACTGATGACAAA | + |
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Preference number: 5 (lower is better) Translates to: GVMSEDASQNQEDLK*NDRIQSRDVNTDDK Trigger: TTTGTCATCAGTGTTGACATCTCTTGATTGTATCCTGTCATTCCATTTGAGATCTTCCTGGTTCTGGCTGGCATCCTCTGACATCACTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000412882.5 ENST00000431025.1 ENST00000437981.5 ENST00000596412.6 ENST00000618757.4 |
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| CDS CAA 90 bp | CTTCGTCGAGGCTGCCGGTCTCGAGGTCCCCTGGCCTTGGCCTGGTaGGCTGGCGCGCATCAGGGCCAGGTAAAGAGAATAGCGTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: LRRGCRSRGPLALAW*AGAHQGQVKRIASP Trigger: AGGAGACGCTATTCTCTTTACCTGGCCCTGATGCGCGCCAGCCAACCAGGCCAAGGCCAGGGGACCTCGAGACCGGCAGCCTCGACGAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000608355.1 ENST00000609314.5 ENST00000609651.5 |
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| CDS GCA 72 bp | CCGTTCCTTTTCCTCCTTCCGGTTCTTCGTCGAGGCTaGCGGTCTCGAGGTCCCCTGGCCTTGGCCTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: PFLFLLPVLRRG*RSRGPLALAWL Trigger: CAACCAGGCCAAGGCCAGGGGACCTCGAGACCGGCAGCCTCGACGAAGAACCGGAAGGAGGAAAAGGAACGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000447209.5 ENST00000608355.1 ENST00000608616.5 ENST00000609161.5 ENST00000609314.5 ENST00000609651.5 |
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| CDS TCA 72 bp | AAAGCCGGCGAGTCCCAGGGAAGCAGGACGAATTGGTaGGCCGACTGCCAGACCCGTGACCAGAGTGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: KAGESQGSRTNW*ADCQTRDQSEG Trigger: ACCTTCACTCTGGTCACGGGTCTGGCAGTCGGCTCACCAATTCGTCCTGCTTCCCTGGGACTCGCCGGCTTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000431214.5 ENST00000447209.5 ENST00000451969.1 ENST00000608342.5 ENST00000608616.5 ENST00000609161.5 ENST00000618757.4 ENST00000618820.1 |
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| CDS TCA 72 bp | CAGGACTTGCTAAGGTGGCTGAACTCCGAAGACGGGTaGACGCTCAGCCAAGGCAGGTCTGTCATGCCAATG | + |
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Preference number: 6 (lower is better) Translates to: QDLLRWLNSEDG*TLSQGRSVMPM Trigger: CATTGGCATGACAGACCTGCCTTGGCTGAGCGTTCACCCGTCTTCGGAGTTCAGCCACCTTAGCAAGTCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000451969.1 ENST00000609161.5 ENST00000618757.4 |
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| CDS GCA 72 bp | GCCATGCAGGCAGGGTGTGCTGGGTCTCTCTCCTCCTaGTACACCACACGTTCACATGACCAATTTGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: AMQAGCAGSLSS*YTTRSHDQFGV Trigger: CACTCCAAATTGGTCATGTGAACGTGTGGTGTAGCAGGAGGAGAGAGACCCAGCACACCCTGCCTGCATGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609161.5 |
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| CDS CAA 72 bp | AGAAGGTCTCTGAATATCTGGTCTCCCCAGATGCCCTaGAAACTTCTGAGCCCGCAGCATCAGCCCACCCCC | + |
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Preference number: 6 (lower is better) Translates to: RRSLNIWSPQMP*KLLSPQHQPTP Trigger: GGGGGTGGGCTGATGCTGCGGGCTCAGAAGTTTCAAGGGCATCTGGGGAGACCAGATATTCAGAGACCTTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000608616.5 ENST00000618757.4 ENST00000618820.1 |
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| CDS TCA 72 bp | AAAGGTGGAGTGAAGGCAGATCAGACGGGGACCTTGTaGCCACGCAGTAATGCAGCGTGTTCCTTCCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: KGGVKADQTGTL*PRSNAACSFPF Trigger: GAAAGGGAAGGAACACGCTGCATTACTGCGTGGTCACAAGGTCCCCGTCTGATCTGCCTTCACTCCACCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000431025.1 ENST00000596412.6 ENST00000618757.4 |
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| CDS TCA 72 bp | AGCCCCCGATCCAGGCAATGGGCGAGCAGCAAAATCTaGAGAACAAACCCAGGACTTGCTAAGGTGGCTGAA | + |
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Preference number: 6 (lower is better) Translates to: SPRSRQWASSKI*RTNPGLAKVAE Trigger: TTCAGCCACCTTAGCAAGTCCTGGGTTTGTTCTTCAGATTTTGCTGCTCGCCCATTGCCTGGATCGGGGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000451969.1 ENST00000618757.4 |
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| CDS GCA 72 bp | CCACGCAGTAATGCAGCGTGTTCCTTCCCTTTCTTCTaGTGGAGTGATGTCAGAGGATGCCAGCCAGAACCA | + |
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Preference number: 6 (lower is better) Translates to: PRSNAACSFPFF*WSDVRGCQPEP Trigger: TGGTTCTGGCTGGCATCCTCTGACATCACTCCAGCAGAAGAAAGGGAAGGAACACGCTGCATTACTGCGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000412882.5 ENST00000431025.1 ENST00000437981.5 ENST00000596412.6 ENST00000618757.4 |
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| CDS CCA 72 bp | CGCAGTAATGCAGCGTGTTCCTTCCCTTTCTTCTGCTaGAGTGATGTCAGAGGATGCCAGCCAGAACCAGGA | + |
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Preference number: 6 (lower is better) Translates to: RSNAACSFPFFC*SDVRGCQPEPG Trigger: TCCTGGTTCTGGCTGGCATCCTCTGACATCACTCCAGCAGAAGAAAGGGAAGGAACACGCTGCATTACTGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000412882.5 ENST00000431025.1 ENST00000437981.5 ENST00000596412.6 ENST00000618757.4 |
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| CDS CAA 72 bp | GGCAGGCTAGTTGCCAGACCTTTGGTGTTAGAACTTTaGCTGGGATGGCCGGCTTGTGGAGAGGAAGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: GRLVARPLVLEL*LGWPACGEEVP Trigger: AGGAACTTCCTCTCCACAAGCCGGCCATCCCAGCAAAAGTTCTAACACCAAAGGTCTGGCAACTAGCCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451969.1 |
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| CDS CAA 72 bp | CTCCAGGCACAAGATGGCAGGCTAGTTGCCAGACCTTaGGTGTTAGAACTTTTGCTGGGATGGCCGGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: LQAQDGRLVARP*VLELLLGWPAC Trigger: ACAAGCCGGCCATCCCAGCAAAAGTTCTAACACCAAAGGTCTGGCAACTAGCCTGCCATCTTGTGCCTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451969.1 |
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| CDS CAA 72 bp | TCATGCCCCTGGCAGTCATCTTTGGTGTTAGAACTTTaGCTGGGATGGCCGGCTTGTGGAGAGGAAGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SCPWQSSLVLEL*LGWPACGEEVP Trigger: AGGAACTTCCTCTCCACAAGCCGGCCATCCCAGCAAAAGTTCTAACACCAAAGATGACTGCCAGGGGCATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430173.1 ENST00000618757.4 |
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| CDS CCA 72 bp | AAAACTCAGAGAACAGACAGTGGTGAGTATATTTCCTaGATGACCCACAGGGGATTAATGAGAGGCCAAGAG | + |
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Preference number: 6 (lower is better) Translates to: KTQRTDSGEYIS*MTHRGLMRGQE Trigger: CTCTTGGCCTCTCATTAATCCCCTGTGGGTCATCCAGGAAATATACTCACCACTGTCTGTTCTCTGAGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000430173.1 ENST00000451969.1 ENST00000618757.4 |
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| CDS CCA 72 bp | TCAGAGGATGCCAGCCAGAACCAGGAAGATCTCAAATaGAATGACAGGATACAATCAAGAGATGTCAACACT | + |
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Preference number: 6 (lower is better) Translates to: SEDASQNQEDLK*NDRIQSRDVNT Trigger: AGTGTTGACATCTCTTGATTGTATCCTGTCATTCCATTTGAGATCTTCCTGGTTCTGGCTGGCATCCTCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000412882.5 ENST00000431025.1 ENST00000437981.5 ENST00000596412.6 ENST00000618757.4 |
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