Pregenerated sensors for LINC00709 (Homo sapiens)

Ensembl gene IDs: ENSG00000230014

Ensembl transcript IDs: ENST00000458168.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGGCCTCACAAGAGTCTCCTTTCCAATGAACCTTCGTGCTCAGTGTaGAGAGAACTTGAGTGCGTAGTAATTCTTGCAGCAGGTCCTAGA	+
Preference number: 5 (lower is better) Translates to: RPHKSLLSNEPSCSV*RELECVVILAAGPR Trigger: TCTAGGACCTGCTGCAAGAATTACTACGCACTCAAGTTCTCTGCACACTGAGCACGAAGGTTCATTGGAAAGGAGACTCTTGTGAGGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458168.1
CDS GCA 90 bp	TGTGCTTCAAGGCCTCACAAGAGTCTCCTTTCCAATGAACCTTCGTaGTCAGTGTGCAGAGAACTTGAGTGCGTAGTAATTCTTGCAGCA	+
Preference number: 5 (lower is better) Translates to: CASRPHKSLLSNEPS*SVCRELECVVILAA Trigger: TGCTGCAAGAATTACTACGCACTCAAGTTCTCTGCACACTGAGCACGAAGGTTCATTGGAAAGGAGACTCTTGTGAGGCCTTGAAGCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458168.1
CDS GCA 90 bp	CTCCTTTCCAATGAACCTTCGTGCTCAGTGTGCAGAGAACTTGAGTaGGTAGTAATTCTTGCAGCAGGTCCTAGATTTTTGACCCAAAGC	+
Preference number: 5 (lower is better) Translates to: LLSNEPSCSVCRELE*VVILAAGPRFLTQS Trigger: GCTTTGGGTCAAAAATCTAGGACCTGCTGCAAGAATTACTACGCACTCAAGTTCTCTGCACACTGAGCACGAAGGTTCATTGGAAAGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000458168.1
CDS GCA 72 bp	AGGCCTCACAAGAGTCTCCTTTCCAATGAACCTTCGTaGTCAGTGTGCAGAGAACTTGAGTGCGTAGTAATT	+
Preference number: 6 (lower is better) Translates to: RPHKSLLSNEPS*SVCRELECVVI Trigger: AATTACTACGCACTCAAGTTCTCTGCACACTGAGCACGAAGGTTCATTGGAAAGGAGACTCTTGTGAGGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458168.1
CDS GCA 72 bp	AAGAGTCTCCTTTCCAATGAACCTTCGTGCTCAGTGTaGAGAGAACTTGAGTGCGTAGTAATTCTTGCAGCA	+
Preference number: 6 (lower is better) Translates to: KSLLSNEPSCSV*RELECVVILAA Trigger: TGCTGCAAGAATTACTACGCACTCAAGTTCTCTGCACACTGAGCACGAAGGTTCATTGGAAAGGAGACTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458168.1
CDS CCA 72 bp	GTTACTTTTCATATCTGTACAATTATTAGGTGTGAATaGATGTGCTTCAAGGCCTCACAAGAGTCTCCTTTC	+
Preference number: 6 (lower is better) Translates to: VTFHICTIIRCE*MCFKASQESPF Trigger: GAAAGGAGACTCTTGTGAGGCCTTGAAGCACATCCATTCACACCTAATAATTGTACAGATATGAAAAGTAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000458168.1

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