Pregenerated sensors for LINC00678 (Homo sapiens)
Ensembl gene IDs: ENSG00000254934Ensembl transcript IDs: ENST00000527083.5, ENST00000534757.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AACCAGGTTGGGGCATGTCCAGGCTGTGTTCCACACATCTTCTCCTaGATCCTCAGCCCAAGCAGAAATCAGACACCTCCATGCTGTCCT | + |
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Preference number: 5 (lower is better) Translates to: NQVGACPGCVPHIFS*ILSPSRNQTPPCCP Trigger: AGGACAGCATGGAGGTGTCTGATTTCTGCTTGGGCTGAGGATTCAGGAGAAGATGTGTGGAACACAGCCTGGACATGCCCCAACCTGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000527083.5 |
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| CDS CCA 90 bp | GCTCTTCAAGAAGAAAACAGGTTCCTGGGGTGCCTCGCCATGTGGTaGATCTCACACTCCCGTCATTCTGCTAACACAATCCCAGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: ALQEENRFLGCLAMW*ISHSRHSANTIPGA Trigger: AGCTCCTGGGATTGTGTTAGCAGAATGACGGGAGTGTGAGATCCACCACATGGCGAGGCACCCCAGGAACCTGTTTTCTTCTTGAAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS CCA 90 bp | GTTGCTCTTCAAGAAGAAAACAGGTTCCTGGGGTGCCTCGCCATGTaGTGGATCTCACACTCCCGTCATTCTGCTAACACAATCCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: VALQEENRFLGCLAM*WISHSRHSANTIPG Trigger: TCCTGGGATTGTGTTAGCAGAATGACGGGAGTGTGAGATCCACCACATGGCGAGGCACCCCAGGAACCTGTTTTCTTCTTGAAGAGCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS CCA 90 bp | CTTGGAAATAGTTCTCGGTTGCTCTTCAAGAAGAAAACAGGTTCCTaGGGTGCCTCGCCATGTGGTGGATCTCACACTCCCGTCATTCTG | + |
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Preference number: 5 (lower is better) Translates to: LGNSSRLLFKKKTGS*GASPCGGSHTPVIL Trigger: CAGAATGACGGGAGTGTGAGATCCACCACATGGCGAGGCACCCCAGGAACCTGTTTTCTTCTTGAAGAGCAACCGAGAACTATTTCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS TCA 90 bp | TTTAAAATTGGTGAGATGTTCGTTGGGCTGGTCGGTCTGAGGACCTaGGGTCGTAGGTGGATCTTTCTCACGGAGCAAAGAACAGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: FKIGEMFVGLVGLRT*GRRWIFLTEQRTGG Trigger: TCCTCCTGTTCTTTGCTCCGTGAGAAAGATCCACCTACGACCTCAGGTCCTCAGACCGACCAGCCCAACGAACATCTCACCAATTTTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS TCA 90 bp | GGTCCTGATTTAAAATTGGTGAGATGTTCGTTGGGCTGGTCGGTCTaGGGACCTGAGGTCGTAGGTGGATCTTTCTCACGGAGCAAAGAA | + |
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Preference number: 5 (lower is better) Translates to: GPDLKLVRCSLGWSV*GPEVVGGSFSRSKE Trigger: TTCTTTGCTCCGTGAGAAAGATCCACCTACGACCTCAGGTCCTCAGACCGACCAGCCCAACGAACATCTCACCAATTTTAAATCAGGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS CCA 90 bp | AGGTGTGTTTCTTCCACTACTTGGGGTGGAATTCATCAACCAGGTTaGGGCATGTCCAGGCTGTGTTCCACACATCTTCTCCTGAATCCT | + |
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Preference number: 5 (lower is better) Translates to: RCVSSTTWGGIHQPG*GMSRLCSTHLLLNP Trigger: AGGATTCAGGAGAAGATGTGTGGAACACAGCCTGGACATGCCCCAACCTGGTTGATGAATTCCACCCCAAGTAGTGGAAGAAACACACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000527083.5 |
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| CDS GCA 90 bp | CATGCTGTCCTCAAAGTGAAGGATAACTTGGAAATAGTTCTCGGTTaGTCTTCAAGAAGAAAACAGGTTCCTGGGGTGCCTCGCCATGTG | + |
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Preference number: 5 (lower is better) Translates to: HAVLKVKDNLEIVLG*SSRRKQVPGVPRHV Trigger: CACATGGCGAGGCACCCCAGGAACCTGTTTTCTTCTTGAAGAGCAACCGAGAACTATTTCCAAGTTATCCTTCACTTTGAGGACAGCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000527083.5 |
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| CDS CAA 72 bp | TCTTTCTCACGGAGCAAAGAACAGGAGGACAGGGGATaGATCTCCCAAGGGAGGACCCCCGATCCGAGTCAC | + |
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Preference number: 6 (lower is better) Translates to: SFSRSKEQEDRG*ISQGRTPDPSH Trigger: GTGACTCGGATCGGGGGTCCTCCCTTGGGAGATCAATCCCCTGTCCTCCTGTTCTTTGCTCCGTGAGAAAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS TCA 72 bp | GGTGAGATGTTCGTTGGGCTGGTCGGTCTGAGGACCTaGGGTCGTAGGTGGATCTTTCTCACGGAGCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: GEMFVGLVGLRT*GRRWIFLTEQR Trigger: TCTTTGCTCCGTGAGAAAGATCCACCTACGACCTCAGGTCCTCAGACCGACCAGCCCAACGAACATCTCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS GCA 72 bp | TCGGTTGCTCTTCAAGAAGAAAACAGGTTCCTGGGGTaGCTCGCCATGTGGTGGATCTCACACTCCCGTCAT | + |
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Preference number: 6 (lower is better) Translates to: SVALQEENRFLG*LAMWWISHSRH Trigger: ATGACGGGAGTGTGAGATCCACCACATGGCGAGGCACCCCAGGAACCTGTTTTCTTCTTGAAGAGCAACCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS CCA 72 bp | AGTTCTCGGTTGCTCTTCAAGAAGAAAACAGGTTCCTaGGGTGCCTCGCCATGTGGTGGATCTCACACTCCC | + |
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Preference number: 6 (lower is better) Translates to: SSRLLFKKKTGS*GASPCGGSHTP Trigger: GGGAGTGTGAGATCCACCACATGGCGAGGCACCCCAGGAACCTGTTTTCTTCTTGAAGAGCAACCGAGAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS CCA 72 bp | GAAGAAAACAGGTTCCTGGGGTGCCTCGCCATGTGGTaGATCTCACACTCCCGTCATTCTGCTAACACAATC | + |
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Preference number: 6 (lower is better) Translates to: EENRFLGCLAMW*ISHSRHSANTI Trigger: GATTGTGTTAGCAGAATGACGGGAGTGTGAGATCCACCACATGGCGAGGCACCCCAGGAACCTGTTTTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS CCA 72 bp | CAAGAAGAAAACAGGTTCCTGGGGTGCCTCGCCATGTaGTGGATCTCACACTCCCGTCATTCTGCTAACACA | + |
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Preference number: 6 (lower is better) Translates to: QEENRFLGCLAM*WISHSRHSANT Trigger: TGTGTTAGCAGAATGACGGGAGTGTGAGATCCACCACATGGCGAGGCACCCCAGGAACCTGTTTTCTTCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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| CDS CCA 72 bp | TCTTCCACTACTTGGGGTGGAATTCATCAACCAGGTTaGGGCATGTCCAGGCTGTGTTCCACACATCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: SSTTWGGIHQPG*GMSRLCSTHLL Trigger: GAGAAGATGTGTGGAACACAGCCTGGACATGCCCCAACCTGGTTGATGAATTCCACCCCAAGTAGTGGAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000527083.5 |
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| CDS CAA 72 bp | TTCTTCCACTACTTGGGGTGGAATTCATCAACCAGGTaGGGGCATGTCCAGGCTGTGTTCCACACATCTTCT | + |
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Preference number: 6 (lower is better) Translates to: FFHYLGWNSSTR*GHVQAVFHTSS Trigger: AGAAGATGTGTGGAACACAGCCTGGACATGCCCCAACCTGGTTGATGAATTCCACCCCAAGTAGTGGAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000527083.5 |
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| CDS CAA 72 bp | GTCATTCTGCTAACACAATCCCAGGAGCTGATTCTGTaGCGTCTCGCAGGGTATCAGTCTCATCCAGATCAA | + |
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Preference number: 6 (lower is better) Translates to: VILLTQSQELIL*RLAGYQSHPDQ Trigger: TTGATCTGGATGAGACTGATACCCTGCGAGACGCAACAGAATCAGCTCCTGGGATTGTGTTAGCAGAATGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000527083.5 ENST00000534757.1 |
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