Pregenerated sensors for LINC00663 (Homo sapiens)
Ensembl gene IDs: ENSG00000266904Ensembl transcript IDs: ENST00000586645.5, ENST00000586816.1, ENST00000588223.5, ENST00000589508.1, ENST00000589910.5, ENST00000590092.5
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGTAGTGCAGGTCCACTGAACCATCAAAGACCAGGTACATGCCTCTaGCTGGTGTTCTCAACTCATCCACCAGTGTGGAGCTGTCATCCC | + |
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Preference number: 5 (lower is better) Translates to: GSAGPLNHQRPGTCL*LVFSTHPPVWSCHP Trigger: GGGATGACAGCTCCACACTGGTGGATGAGTTGAGAACACCAGGCAGAGGCATGTACCTGGTCTTTGATGGTTCAGTGGACCTGCACTACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000586645.5 ENST00000590092.5 |
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| CDS GCA 90 bp | TGCAATGGTAGTGCAGGTCCACTGAACCATCAAAGACCAGGTACATaGCTCTGCCTGGTGTTCTCAACTCATCCACCAGTGTGGAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: CNGSAGPLNHQRPGT*LCLVFSTHPPVWSC Trigger: ACAGCTCCACACTGGTGGATGAGTTGAGAACACCAGGCAGAGGCATGTACCTGGTCTTTGATGGTTCAGTGGACCTGCACTACCATTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000586645.5 ENST00000590092.5 |
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| CDS CCA 90 bp | GTGCAAGCTGCCAGTGGATCTACCATTATGATGTCAGGAGGACAGTaGTTCTCTTCTCATAGCTCCACTAGGAAGTCCTCCAGTGGGACT | + |
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Preference number: 5 (lower is better) Translates to: VQAASGSTIMMSGGQ*FSSHSSTRKSSSGT Trigger: AGTCCCACTGGAGGACTTCCTAGTGGAGCTATGAGAAGAGAACCACTGTCCTCCTGACATCATAATGGTAGATCCACTGGCAGCTTGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000586645.5 ENST00000590092.5 |
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| CDS TCA 90 bp | CTGCGTGGACATCCAGACTTTTCCATGAATCTTCCTAAATCTAGGTaGAGGTTTCCAAGCTTCAACTCTTGCACTTTGCACTGCAATGGT | + |
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Preference number: 5 (lower is better) Translates to: LRGHPDFSMNLPKSR*RFPSFNSCTLHCNG Trigger: ACCATTGCAGTGCAAAGTGCAAGAGTTGAAGCTTGGAAACCTTCACCTAGATTTAGGAAGATTCATGGAAAAGTCTGGATGTCCACGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000586645.5 ENST00000590092.5 |
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| CDS GCA 90 bp | AACAAACAAACAAACAAACAAACTACCATGCCTTCTCAACAGTCCTaGAAATATTTAACTCATTCCAGCATTAACTCAAAAGTCCACAGT | + |
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Preference number: 5 (lower is better) Translates to: NKQTNKQTTMPSQQS*KYLTHSSINSKVHS Trigger: ACTGTGGACTTTTGAGTTAATGCTGGAATGAGTTAAATATTTGCAGGACTGTTGAGAAGGCATGGTAGTTTGTTTGTTTGTTTGTTTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000586645.5 |
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| CDS CCA 72 bp | TCCTATCCCACATCAAGGGCGTGCTGGTACAAGGGGTaGGCTCCCAAAGCCTTGGGCAGCACCACACTTGTG | + |
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Preference number: 6 (lower is better) Translates to: SYPTSRACWYKG*APKALGSTTLV Trigger: CACAAGTGTGGTGCTGCCCAAGGCTTTGGGAGCCCACCCCTTGTACCAGCACGCCCTTGATGTGGGATAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000586645.5 |
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| CDS TCA 72 bp | CTGTCACTCACCAGGCCTGGCCTAGGGGCAATGGAGTaGGGCCTTGTCTCTAAGAAGCATCAGAGTAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: LSLTRPGLGAME*GLVSKKHQSRS Trigger: GCTCCTACTCTGATGCTTCTTAGAGACAAGGCCTCACTCCATTGCCCCTAGGCCAGGCCTGGTGAGTGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000586645.5 |
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| CDS TCA 72 bp | CTGTCACTCACCAGGCCTGGCCTAGGGGCAATGGAGTaGGGCCTTGTCTCTAAGAAGCATATTTGTGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: LSLTRPGLGAME*GLVSKKHICER Trigger: CCTCTCACAAATATGCTTCTTAGAGACAAGGCCTCACTCCATTGCCCCTAGGCCAGGCCTGGTGAGTGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000589910.5 |
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| CDS TCA 72 bp | CTGTCACTCACCAGGCCTGGCCTAGGGGCAATGGAGTaGGGCCTTGTCTCTAAGAAGCATTCAACTGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: LSLTRPGLGAME*GLVSKKHSTEE Trigger: TTCCTCAGTTGAATGCTTCTTAGAGACAAGGCCTCACTCCATTGCCCCTAGGCCAGGCCTGGTGAGTGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588223.5 |
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| CDS GCA 72 bp | GGTCCACTGAACCATCAAAGACCAGGTACATGCCTCTaGCTGGTGTTCTCAACTCATCCACCAGTGTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: GPLNHQRPGTCL*LVFSTHPPVWS Trigger: GCTCCACACTGGTGGATGAGTTGAGAACACCAGGCAGAGGCATGTACCTGGTCTTTGATGGTTCAGTGGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000586645.5 ENST00000590092.5 |
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| CDS TCA 72 bp | CTTGCACTTTGCACTGCAATGGTAGTGCAGGTCCACTaGACCATCAAAGACCAGGTACATGCCTCTGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: LALCTAMVVQVH*TIKDQVHASAW Trigger: CCAGGCAGAGGCATGTACCTGGTCTTTGATGGTTCAGTGGACCTGCACTACCATTGCAGTGCAAAGTGCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000586645.5 ENST00000590092.5 |
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| CDS CCA 72 bp | TGCCTCTGCCTGGTGTTCTCAACTCATCCACCAGTGTaGAGCTGTCATCCCACTTTTCATTACGGTCATCAT | + |
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Preference number: 6 (lower is better) Translates to: CLCLVFSTHPPV*SCHPTFHYGHH Trigger: ATGATGACCGTAATGAAAAGTGGGATGACAGCTCCACACTGGTGGATGAGTTGAGAACACCAGGCAGAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000586645.5 ENST00000589910.5 ENST00000590092.5 |
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| CDS CAA 72 bp | GGGTTTAGCACCTGTAGATGCTCTCAAGGGCTGGCCTaGAGTACTTGTAGCTTTTTCAGGCTGAGAGTGCAA | + |
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Preference number: 6 (lower is better) Translates to: GFSTCRCSQGLA*STCSFFRLRVQ Trigger: TTGCACTCTCAGCCTGAAAAAGCTACAAGTACTCAAGGCCAGCCCTTGAGAGCATCTACAGGTGCTAAACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000586645.5 ENST00000590092.5 |
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| CDS CAA 72 bp | GTGAAGACAATGCAAACATCTCCAACTCTTGCAAGCTaGAAGGGGAAGTCCCTGCCTTTCACGTCCCTAGCT | + |
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Preference number: 6 (lower is better) Translates to: VKTMQTSPTLAS*KGKSLPFTSLA Trigger: AGCTAGGGACGTGAAAGGCAGGGACTTCCCCTTCAAGCTTGCAAGAGTTGGAGATGTTTGCATTGTCTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000586816.1 |
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| CDS TCA 72 bp | GCAGCAGGCTTCTGCGTGGACATCCAGACTTTTCCATaGATCTTCCTAAATCTAGGTGAAGGTTTCCAAGCT | + |
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Preference number: 6 (lower is better) Translates to: AAGFCVDIQTFP*IFLNLGEGFQA Trigger: AGCTTGGAAACCTTCACCTAGATTTAGGAAGATTCATGGAAAAGTCTGGATGTCCACGCAGAAGCCTGCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000586645.5 ENST00000590092.5 |
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| CDS CCA 72 bp | AGTGGCAGCACTCAACTGCAGCAGAGTAGGAGCTTATaGAGGTCAGGCGATCAATGGAGTTTTGAATCAATT | + |
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Preference number: 6 (lower is better) Translates to: SGSTQLQQSRSL*RSGDQWSFESI Trigger: AATTGATTCAAAACTCCATTGATCGCCTGACCTCCATAAGCTCCTACTCTGCTGCAGTTGAGTGCTGCCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000588223.5 ENST00000589508.1 ENST00000589910.5 ENST00000590092.5 |
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| CDS CCA 72 bp | GGCCTTGTCTCTAAGAAGCATCAGAGTAGGAGCTTATaGAGGTCAGGCGATCAATGGAGTTTTGAATCAATT | + |
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Preference number: 6 (lower is better) Translates to: GLVSKKHQSRSL*RSGDQWSFESI Trigger: AATTGATTCAAAACTCCATTGATCGCCTGACCTCCATAAGCTCCTACTCTGATGCTTCTTAGAGACAAGGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000586645.5 |
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| CDS CAA 72 bp | ACATTTGTGAGAGGAGTCCCAGTATCTCCAAAGAGCTaGATCACCACACTTCTCTGTAGGACAGAACTTACA | + |
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Preference number: 6 (lower is better) Translates to: TFVRGVPVSPKS*ITTLLCRTELT Trigger: TGTAAGTTCTGTCCTACAGAGAAGTGTGGTGATCAAGCTCTTTGGAGATACTGGGACTCCTCTCACAAATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000588223.5 ENST00000589508.1 |
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| CDS CAA 90 bp | GTGAGACATACATTTGTGAGAGGAGTCCCAGTATCTCCAAAGAGCTaGATCACCACACTTCTCTGTAGGACAGAACTTACAATGAAGATT | + |
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Preference number: 6 (lower is better) Translates to: VRHTFVRGVPVSPKS*ITTLLCRTELTMKI Trigger: AATCTTCATTGTAAGTTCTGTCCTACAGAGAAGTGTGGTGATCAAGCTCTTTGGAGATACTGGGACTCCTCTCACAAATGTATGTCTCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000588223.5 ENST00000589508.1 |
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| CDS TCA 72 bp | CATCCAGACTTTTCCATGAATCTTCCTAAATCTAGGTaGAGGTTTCCAAGCTTCAACTCTTGCACTTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: HPDFSMNLPKSR*RFPSFNSCTLH Trigger: GTGCAAAGTGCAAGAGTTGAAGCTTGGAAACCTTCACCTAGATTTAGGAAGATTCATGGAAAAGTCTGGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000586645.5 ENST00000590092.5 |
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| CDS GCA 72 bp | ACAAACAAACAAACTACCATGCCTTCTCAACAGTCCTaGAAATATTTAACTCATTCCAGCATTAACTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: TNKQTTMPSQQS*KYLTHSSINSK Trigger: TTTTGAGTTAATGCTGGAATGAGTTAAATATTTGCAGGACTGTTGAGAAGGCATGGTAGTTTGTTTGTTTGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586645.5 |
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