Pregenerated sensors for LINC00648 (Homo sapiens)
Ensembl gene IDs: ENSG00000259129Ensembl transcript IDs: ENST00000553747.5, ENST00000555985.6, ENST00000556923.1, ENST00000557749.5
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGGTCCTACGCCCACGGAGTCTCCCTGATTGCTAGCACAGCAGTCTaGGATCAAACTGCAAGGCGGCAGCCAGGCTGGGGGAGGGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: GSYAHGVSLIASTAV*DQTARRQPGWGRGA Trigger: GGCGCCCCTCCCCCAGCCTGGCTGCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTAGCAATCAGGGAGACTCCGTGGGCGTAGGACCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000555985.6 ENST00000557749.5 |
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| CDS TCA 90 bp | GGCGGCAGCCAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTaGTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGGGTGGAGC | + |
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Preference number: 5 (lower is better) Translates to: GGSQAGGGAPAIAQA*LGKQSSWEARTGWS Trigger: GCTCCACCCAGTTCGAGCTTCCCAGCTGCTTTGTTTACCTAATCAAGCCTGGGCAATGGCGGGCGCCCCTCCCCCAGCCTGGCTGCCGCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS GCA 90 bp | AAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTaGCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAA | + |
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Preference number: 5 (lower is better) Translates to: KLELGGAHHSSRRPA*LCRLHLWGQGTDKQ Trigger: TTGTTTGTCTGTGCCCTGCCCCCAGAGGTGGAGCCTACAGAGGCAGGCAGGCCTCCTTGAGCTGTGGTGGGCTCCACCCAGTTCGAGCTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CCA 90 bp | CACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTaGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: HHSSRRPACLCRLHL*GQGTDKQKDSSNLC Trigger: GCAGAGGTTACTGCTGTCTTTTTGTTTGTCTGTGCCCTGCCCCCAGAGGTGGAGCCTACAGAGGCAGGCAGGCCTCCTTGAGCTGTGGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CCA 90 bp | GAGTCTGATGTTCAAGGGCAGAAAGCATCCAGCATGGAAGAAAGATaGAGGCCAGAAGGCTTAGCCAGTCTGGTCTTTCCACGTGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: ESDVQGQKASSMEER*RPEGLASLVFPRVS Trigger: AGAAACACGTGGAAAGACCAGACTGGCTAAGCCTTCTGGCCTCCATCTTTCTTCCATGCTGGATGCTTTCTGCCCTTGAACATCAGACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS GCA 90 bp | CAGTCTGGTCTTTCCACGTGTTTCTGTCTGCTTTTATTCTGGCCATaGTGGCAGCTGATTAGATTGTCCCCACCCGGATTGATTGTGGAT | + |
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Preference number: 5 (lower is better) Translates to: QSGLSTCFCLLLFWP*WQLIRLSPPGLIVD Trigger: ATCCACAATCAATCCGGGTGGGGACAATCTAATCAGCTGCCAGCATGGCCAGAATAAAAGCAGACAGAAACACGTGGAAAGACCAGACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CCA 90 bp | CTGCGTGGAGACCAATTAGCTGCTGGGTGGTGCGTAGTGGAACAATaGCATGTTAAGTTAAAGATTTCAGTGGGATGCCTAGCTCAGACA | + |
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Preference number: 5 (lower is better) Translates to: LRGDQLAAGWCVVEQ*HVKLKISVGCLAQT Trigger: TGTCTGAGCTAGGCATCCCACTGAAATCTTTAACTTAACATGCCATTGTTCCACTACGCACCACCCAGCAGCTAATTGGTCTCCACGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CCA 90 bp | TATTTCTCACAGTTCTGGAGGATGGAAAGATCAAGGTTGAGGTGCTaGCAGTCAGTTCCTAGTGAGGGCCCTCTTCCTGGTTATCAGATA | + |
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Preference number: 5 (lower is better) Translates to: YFSQFWRMERSRLRC*QSVPSEGPLPGYQI Trigger: TATCTGATAACCAGGAAGAGGGCCCTCACTAGGAACTGACTGCCAGCACCTCAACCTTGATCTTTCCATCCTCCAGAACTGTGAGAAATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CCA 90 bp | CCCCCTAATAGCACCATTCTGCGTGGAGACCAATTAGCTGCTGGGTaGTGCGTAGTGGAACAATGGCATGTTAAGTTAAAGATTTCAGTG | + |
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Preference number: 5 (lower is better) Translates to: PPNSTILRGDQLAAG*CVVEQWHVKLKISV Trigger: CACTGAAATCTTTAACTTAACATGCCATTGTTCCACTACGCACCACCCAGCAGCTAATTGGTCTCCACGCAGAATGGTGCTATTAGGGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS TCA 90 bp | CACTGGTGTGAGTCCAAGAATCCAAAAGCTGAAGAACTTGGAGTCTaGTGTTCAAGGGCAGAAAGCATCCAGCATGGAAGAAAGATGGAG | + |
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Preference number: 5 (lower is better) Translates to: HWCESKNPKAEELGV*CSRAESIQHGRKME Trigger: CTCCATCTTTCTTCCATGCTGGATGCTTTCTGCCCTTGAACATCAGACTCCAAGTTCTTCAGCTTTTGGATTCTTGGACTCACACCAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS TCA 90 bp | ATGAAGGGGAATTTATTAGGAGAAATGACTCACAGGATCACAAGGTaGAGTCCCACCATTGGTTGTCTTCAAGCTGAGGAGCCAGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: MKGNLLGEMTHRITR*SPTIGCLQAEEPGS Trigger: GCTTCCTGGCTCCTCAGCTTGAAGACAACCAATGGTGGGACTTCACCTTGTGATCCTGTGAGTCATTTCTCCTAATAAATTCCCCTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS GCA 90 bp | CCTAATAGCACCATTCTGCGTGGAGACCAATTAGCTGCTGGGTGGTaGGTAGTGGAACAATGGCATGTTAAGTTAAAGATTTCAGTGGGA | + |
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Preference number: 5 (lower is better) Translates to: PNSTILRGDQLAAGW*VVEQWHVKLKISVG Trigger: TCCCACTGAAATCTTTAACTTAACATGCCATTGTTCCACTACGCACCACCCAGCAGCTAATTGGTCTCCACGCAGAATGGTGCTATTAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS GCA 90 bp | GTAGCATGGGTTCCCTGTCTCCAACACAAATTTATCTCCTGTTACTaGATGATGTCCATACATACAAGACAATCACTGAGTCCCCCTAAT | + |
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Preference number: 5 (lower is better) Translates to: VAWVPCLQHKFISCY*MMSIHTRQSLSPPN Trigger: ATTAGGGGGACTCAGTGATTGTCTTGTATGTATGGACATCATGCAGTAACAGGAGATAAATTTGTGTTGGAGACAGGGAACCCATGCTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS TCA 90 bp | TATGGCTTCTTCCAGTGTACTTCAGGGGACTTTTCCCAAGTGACTTaGAGAGAAGTCACTATCCTGATAGGGATAATTGATCTGAACTTC | + |
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Preference number: 5 (lower is better) Translates to: YGFFQCTSGDFSQVT*REVTILIGIIDLNF Trigger: GAAGTTCAGATCAATTATCCCTATCAGGATAGTGACTTCTCTTCAAGTCACTTGGGAAAAGTCCCCTGAAGTACACTGGAAGAAGCCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS TCA 90 bp | TTGTACAACTTTGAGAATCAATGTAATAATACAGCAGCCAGGACCTaGGAAGGCATAGCGACTGTGACTATAGAACTGTCACAGATGAAG | + |
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Preference number: 5 (lower is better) Translates to: LYNFENQCNNTAART*EGIATVTIELSQMK Trigger: CTTCATCTGTGACAGTTCTATAGTCACAGTCGCTATGCCTTCTCAGGTCCTGGCTGCTGTATTATTACATTGATTCTCAAAGTTGTACAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555985.6 ENST00000557749.5 |
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| CDS TCA 90 bp | TGGCATGTTAAGTTAAAGATTTCAGTGGGATGCCTAGCTCAGACATaGGACCATACAAAGATGGGATGTCACTTTTTAGGATGTGTATTC | + |
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Preference number: 5 (lower is better) Translates to: WHVKLKISVGCLAQT*DHTKMGCHFLGCVF Trigger: GAATACACATCCTAAAAAGTGACATCCCATCTTTGTATGGTCTCATGTCTGAGCTAGGCATCCCACTGAAATCTTTAACTTAACATGCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS GCA 90 bp | AACAAGGATGGTAATGTTGAATATCAGTTACAGCCCAAGATCTACTaGAGAGTTGGAAGCTGTGTGGTTTCTTCATTTAATAAGTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: NKDGNVEYQLQPKIY*RVGSCVVSSFNKSP Trigger: TGGAGACTTATTAAATGAAGAAACCACACAGCTTCCAACTCTGCAGTAGATCTTGGGCTGTAACTGATATTCAACATTACCATCCTTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555985.6 ENST00000556923.1 |
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| CDS CCA 72 bp | TTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGGGTaGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: LGKQSSWEARTG*SPPQLKEACLP Trigger: AGGCAGGCAGGCCTCCTTGAGCTGTGGTGGGCTCCACCCAGTTCGAGCTTCCCAGCTGCTTTGTTTACCTAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS TCA 72 bp | CACAAGGTGAAGTCCCACCATTGGTTGTCTTCAAGCTaGGGAGCCAGGAAGCCAGTCCGAGTCCCAAAACCT | + |
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Preference number: 6 (lower is better) Translates to: HKVKSHHWLSSS*GARKPVRVPKP Trigger: AGGTTTTGGGACTCGGACTGGCTTCCTGGCTCCTCAGCTTGAAGACAACCAATGGTGGGACTTCACCTTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CAA 72 bp | AACCTCTGCAGACTTAAATGTCCCTGTCTGACAGCTTaGAAGGGAGCAGTGGTTCTCCCAGCACGCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: NLCRLKCPCLTA*KGAVVLPARSW Trigger: CCAGCTGCGTGCTGGGAGAACCACTGCTCCCTTCAAAGCTGTCAGACAGGGACATTTAAGTCTGCAGAGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS GCA 72 bp | TCACAGTTCTGGAGGATGGAAAGATCAAGGTTGAGGTaGTGGCAGTCAGTTCCTAGTGAGGGCCCTCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SQFWRMERSRLR*WQSVPSEGPLP Trigger: AGGAAGAGGGCCCTCACTAGGAACTGACTGCCAGCACCTCAACCTTGATCTTTCCATCCTCCAGAACTGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CCA 72 bp | GTTCAAGGGCAGAAAGCATCCAGCATGGAAGAAAGATaGAGGCCAGAAGGCTTAGCCAGTCTGGTCTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: VQGQKASSMEER*RPEGLASLVFP Trigger: TGGAAAGACCAGACTGGCTAAGCCTTCTGGCCTCCATCTTTCTTCCATGCTGGATGCTTTCTGCCCTTGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CAA 72 bp | CTGCTTTTATTCTGGCCATGCTGGCAGCTGATTAGATaGTCCCCACCCGGATTGATTGTGGATCTGGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LLLFWPCWQLIR*SPPGLIVDLAF Trigger: GAAAGCCAGATCCACAATCAATCCGGGTGGGGACAATCTAATCAGCTGCCAGCATGGCCAGAATAAAAGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CCA 72 bp | AGCACCATTCTGCGTGGAGACCAATTAGCTGCTGGGTaGTGCGTAGTGGAACAATGGCATGTTAAGTTAAAG | + |
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Preference number: 6 (lower is better) Translates to: STILRGDQLAAG*CVVEQWHVKLK Trigger: CTTTAACTTAACATGCCATTGTTCCACTACGCACCACCCAGCAGCTAATTGGTCTCCACGCAGAATGGTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CCA 72 bp | TCCACGTGTTTCTGTCTGCTTTTATTCTGGCCATGCTaGCAGCTGATTAGATTGTCCCCACCCGGATTGATT | + |
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Preference number: 6 (lower is better) Translates to: STCFCLLLFWPC*QLIRLSPPGLI Trigger: AATCAATCCGGGTGGGGACAATCTAATCAGCTGCCAGCATGGCCAGAATAAAAGCAGACAGAAACACGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CAA 72 bp | ACTGGTGTGAGTCCAAGAATCCAAAAGCTGAAGAACTaGGAGTCTGATGTTCAAGGGCAGAAAGCATCCAGC | + |
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Preference number: 6 (lower is better) Translates to: TGVSPRIQKLKN*ESDVQGQKASS Trigger: GCTGGATGCTTTCTGCCCTTGAACATCAGACTCCAAGTTCTTCAGCTTTTGGATTCTTGGACTCACACCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CAA 90 bp | TGGCAAATCACTGGTGTGAGTCCAAGAATCCAAAAGCTGAAGAACTaGGAGTCTGATGTTCAAGGGCAGAAAGCATCCAGCATGGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: WQITGVSPRIQKLKN*ESDVQGQKASSMEE Trigger: TTCTTCCATGCTGGATGCTTTCTGCCCTTGAACATCAGACTCCAAGTTCTTCAGCTTTTGGATTCTTGGACTCACACCAGTGATTTGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS TCA 72 bp | GAGTCCAAGAATCCAAAAGCTGAAGAACTTGGAGTCTaGTGTTCAAGGGCAGAAAGCATCCAGCATGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: ESKNPKAEELGV*CSRAESIQHGR Trigger: TCTTCCATGCTGGATGCTTTCTGCCCTTGAACATCAGACTCCAAGTTCTTCAGCTTTTGGATTCTTGGACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS GCA 72 bp | ACCATTCTGCGTGGAGACCAATTAGCTGCTGGGTGGTaGGTAGTGGAACAATGGCATGTTAAGTTAAAGATT | + |
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Preference number: 6 (lower is better) Translates to: TILRGDQLAAGW*VVEQWHVKLKI Trigger: AATCTTTAACTTAACATGCCATTGTTCCACTACGCACCACCCAGCAGCTAATTGGTCTCCACGCAGAATGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CCA 72 bp | AGACCCACAAGTTTGGACTGTATGATGGAGAAGTTCTaGTCGACAAAGGTAGAATACATCGACTCTGGGACA | + |
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Preference number: 6 (lower is better) Translates to: RPTSLDCMMEKF*STKVEYIDSGT Trigger: TGTCCCAGAGTCGATGTATTCTACCTTTGTCGACCAGAACTTCTCCATCATACAGTCCAAACTTGTGGGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000553747.5 ENST00000555985.6 |
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| CDS CCA 72 bp | GACCAATTAGCTGCTGGGTGGTGCGTAGTGGAACAATaGCATGTTAAGTTAAAGATTTCAGTGGGATGCCTA | + |
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Preference number: 6 (lower is better) Translates to: DQLAAGWCVVEQ*HVKLKISVGCL Trigger: TAGGCATCCCACTGAAATCTTTAACTTAACATGCCATTGTTCCACTACGCACCACCCAGCAGCTAATTGGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS TCA 72 bp | AATTTATTAGGAGAAATGACTCACAGGATCACAAGGTaGAGTCCCACCATTGGTTGTCTTCAAGCTGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: NLLGEMTHRITR*SPTIGCLQAEE Trigger: CTCCTCAGCTTGAAGACAACCAATGGTGGGACTTCACCTTGTGATCCTGTGAGTCATTTCTCCTAATAAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS GCA 72 bp | GCAATACCCTCACAGACACACCTAGGAACGATGCTTTaGATCCTTCAATCCAATCAAGTTGACACTCAATAT | + |
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Preference number: 6 (lower is better) Translates to: AIPSQTHLGTML*ILQSNQVDTQY Trigger: ATATTGAGTGTCAACTTGATTGGATTGAAGGATGCAAAGCATCGTTCCTAGGTGTGTCTGTGAGGGTATTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CAA 72 bp | TCATTTACAGAGTTTGTGCTTTCCAGACCCACAAGTTaGGACTGTATGATGGAGAAGTTCTGGTCGACAAAG | + |
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Preference number: 6 (lower is better) Translates to: SFTEFVLSRPTS*DCMMEKFWSTK Trigger: CTTTGTCGACCAGAACTTCTCCATCATACAGTCCAAACTTGTGGGTCTGGAAAGCACAAACTCTGTAAATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000553747.5 ENST00000555985.6 |
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| CDS TCA 72 bp | TTTGAGAATCAATGTAATAATACAGCAGCCAGGACCTaGGAAGGCATAGCGACTGTGACTATAGAACTGTCA | + |
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Preference number: 6 (lower is better) Translates to: FENQCNNTAART*EGIATVTIELS Trigger: TGACAGTTCTATAGTCACAGTCGCTATGCCTTCTCAGGTCCTGGCTGCTGTATTATTACATTGATTCTCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555985.6 ENST00000557749.5 |
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| CDS CCA 72 bp | TACAGCCCAAGATCTACTGCAGAGTTGGAAGCTGTGTaGTTTCTTCATTTAATAAGTCTCCAACAGAGTAGA | + |
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Preference number: 6 (lower is better) Translates to: YSPRSTAELEAV*FLHLISLQQSR Trigger: TCTACTCTGTTGGAGACTTATTAAATGAAGAAACCACACAGCTTCCAACTCTGCAGTAGATCTTGGGCTGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS GCA 72 bp | GGTAATGTTGAATATCAGTTACAGCCCAAGATCTACTaGAGAGTTGGAAGCTGTGTGGTTTCTTCATTTAAT | + |
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Preference number: 6 (lower is better) Translates to: GNVEYQLQPKIY*RVGSCVVSSFN Trigger: ATTAAATGAAGAAACCACACAGCTTCCAACTCTGCAGTAGATCTTGGGCTGTAACTGATATTCAACATTACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555985.6 ENST00000556923.1 |
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| CDS CAA 72 bp | TTGAATATCAGTTACAGCCCAAGATCTACTGCAGAGTaGGAAGCTGTGTGGTTTCTTCATTTAATAAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: LNISYSPRSTAE*EAVWFLHLISL Trigger: GAGACTTATTAAATGAAGAAACCACACAGCTTCCAACTCTGCAGTAGATCTTGGGCTGTAACTGATATTCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555985.6 ENST00000556923.1 |
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| CDS CAA 72 bp | GGATATGACATTCAGTTTACAACAAGGATGGTAATGTaGAATATCAGTTACAGCCCAAGATCTACTGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: GYDIQFTTRMVM*NISYSPRSTAE Trigger: CTCTGCAGTAGATCTTGGGCTGTAACTGATATTCAACATTACCATCCTTGTTGTAAACTGAATGTCATATCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555985.6 ENST00000556923.1 |
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| CDS CAA 90 bp | ACAAAATATTTCTTACTGCACTGCAATAAGATGGAAGTACAACATTaGGTAGTCCTTTTTGGATACAGGAGGCAGCATAGTTCACATCTG | + |
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Preference number: 6 (lower is better) Translates to: TKYFLLHCNKMEVQH*VVLFGYRRQHSSHL Trigger: CAGATGTGAACTATGCTGCCTCCTGTATCCAAAAAGGACTACCAAATGTTGTACTTCCATCTTATTGCAGTGCAGTAAGAAATATTTTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CCA 72 bp | TACAGCCCAAGATCTACTGCAGAGTTGGAAGCTGTGTaGTTTCTTCATTTAATAAGTCTCCACAAAATTTAT | + |
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Preference number: 6 (lower is better) Translates to: YSPRSTAELEAV*FLHLISLHKIY Trigger: ATAAATTTTGTGGAGACTTATTAAATGAAGAAACCACACAGCTTCCAACTCTGCAGTAGATCTTGGGCTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556923.1 |
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| CDS CCA 72 bp | GAAGTTCTGGTCGACAAAGGTAGAATACATCGACTCTaGGACACTGCAAAAATTTCAATGAACTTAAGTTAT | + |
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Preference number: 6 (lower is better) Translates to: EVLVDKGRIHRL*DTAKISMNLSY Trigger: ATAACTTAAGTTCATTGAAATTTTTGCAGTGTCCCAGAGTCGATGTATTCTACCTTTGTCGACCAGAACTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000555985.6 |
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| CDS CAA 90 bp | ATGGTAATGTTGAATATCAGTTACAGCCCAAGATCTACTGCAGAGTaGGAAGCTGTGTGGTTTCTTCATTTAATAAGTCTCCACAAAATT | + |
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Preference number: 6 (lower is better) Translates to: MVMLNISYSPRSTAE*EAVWFLHLISLHKI Trigger: AATTTTGTGGAGACTTATTAAATGAAGAAACCACACAGCTTCCAACTCTGCAGTAGATCTTGGGCTGTAACTGATATTCAACATTACCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556923.1 |
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