Pregenerated sensors for LINC00559 (Homo sapiens)
Ensembl gene IDs: ENSG00000261446Ensembl transcript IDs: ENST00000569476.2, ENST00000647679.1, ENST00000653351.1, ENST00000654320.1, ENST00000660628.1, ENST00000662619.1
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GACAGGGGTGCGTGTAGGCCAATTGCCCATTCTCAGCCACCTGCCTaGGTGACCTGCCTGGGTGACGTGCTAGCCATAAGGGATCACAGC | + |
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Preference number: 5 (lower is better) Translates to: DRGACRPIAHSQPPA*VTCLGDVLAIRDHS Trigger: GCTGTGATCCCTTATGGCTAGCACGTCACCCAGGCAGGTCACCCAGGCAGGTGGCTGAGAATGGGCAATTGGCCTACACGCACCCCTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS TCA 90 bp | GCCAATTGCCCATTCTCAGCCACCTGCCTGGGTGACCTGCCTGGGTaGCGTGCTAGCCATAAGGGATCACAGCACTCTATTAAGCTTATC | + |
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Preference number: 5 (lower is better) Translates to: ANCPFSATCLGDLPG*RASHKGSQHSIKLI Trigger: GATAAGCTTAATAGAGTGCTGTGATCCCTTATGGCTAGCACGTCACCCAGGCAGGTCACCCAGGCAGGTGGCTGAGAATGGGCAATTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CCA 90 bp | GGACTTTGTGCCAAGAATGATTCGAGCCTCACCTTCCAACAGAGATaGCATCCTCTCACCCGCCAGCAAGGGGGTGGGTCAGTCATAAAT | + |
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Preference number: 5 (lower is better) Translates to: GLCAKNDSSLTFQQR*HPLTRQQGGGSVIN Trigger: ATTTATGACTGACCCACCCCCTTGCTGGCGGGTGAGAGGATGCCATCTCTGTTGGAAGGTGAGGCTCGAATCATTCTTGGCACAAAGTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS GCA 90 bp | CACCCGCCAGCAAGGGGGTGGGTCAGTCATAAATCCCCATCTTACTaGTGCATTTCTCAGGCTATTCTTGGCATCACTTGTGTTAGCTTG | + |
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Preference number: 5 (lower is better) Translates to: HPPARGWVSHKSPSY*CISQAILGITCVSL Trigger: CAAGCTAACACAAGTGATGCCAAGAATAGCCTGAGAAATGCAGCAGTAAGATGGGGATTTATGACTGACCCACCCCCTTGCTGGCGGGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS TCA 90 bp | GCAGGTATTGTGAGGTGTAGTTCAATGCTGAAAGTCACTTTGGCATaGTGGCTGGTTGTGCCTGGAAGTGTCACTTGCTGCTGGCTTGAG | + |
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Preference number: 5 (lower is better) Translates to: AGIVRCSSMLKVTLA*WLVVPGSVTCCWLE Trigger: CTCAAGCCAGCAGCAAGTGACACTTCCAGGCACAACCAGCCATCATGCCAAAGTGACTTTCAGCATTGAACTACACCTCACAATACCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647679.1 |
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| CDS CCA 90 bp | AGGCTTTTCTATTGTATCTGCAGGCCTTTCTTCACTTCTGGAGGCTaGAAGTCAGAGAGTGAAATGTTGGCAGTGTTGGTGCCTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: RLFYCICRPFFTSGG*KSESEMLAVLVPSE Trigger: CTCAGAAGGCACCAACACTGCCAACATTTCACTCTCTGACTTCCAGCCTCCAGAAGTGAAGAAAGGCCTGCAGATACAATAGAAAAGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653351.1 |
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| CDS TCA 90 bp | CTGATCAGAAGCTACGCTGTGTATCAGGCATACCATAAGCACCAGTaGAGGATTTTGGCTCAGACTCAAGGGTGGCAAAGCAGACTTATA | + |
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Preference number: 5 (lower is better) Translates to: LIRSYAVYQAYHKHQ*RILAQTQGWQSRLI Trigger: TATAAGTCTGCTTTGCCACCCTTGAGTCTGAGCCAAAATCCTTCACTGGTGCTTATGGTATGCCTGATACACAGCGTAGCTTCTGATCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS TCA 90 bp | TATCTGCAGGCCTTTCTTCCTGGTAAACTTTGGGCACAAGGAGTCTaGACTTCCCTGGTAGTCATAAATGGTAGTCCATTGGGACACTTG | + |
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Preference number: 5 (lower is better) Translates to: YLQAFLPGKLWAQGV*TSLVVINGSPLGHL Trigger: CAAGTGTCCCAATGGACTACCATTTATGACTACCAGGGAAGTTCAGACTCCTTGTGCCCAAAGTTTACCAGGAAGAAAGGCCTGCAGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS CCA 90 bp | ATCAGGCGCCTTAAACAGAAAATTATGTCTCACACTTCTGGAGGCTaGAAGTCAGAGAGTGAAATGTTGGCAGTGTTGGTGCCTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: IRRLKQKIMSHTSGG*KSESEMLAVLVPSE Trigger: CTCAGAAGGCACCAACACTGCCAACATTTCACTCTCTGACTTCCAGCCTCCAGAAGTGTGAGACATAATTTTCTGTTTAAGGCGCCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569476.2 |
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| CDS TCA 90 bp | CTGAGACTTGAGGAGGGTGCATTTAGAAGCTCTTCCAACACCTTGTaGTACCAGCTGCTTATGGATGGGTCTGTGTGTGATACAATGATT | + |
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Preference number: 5 (lower is better) Translates to: LRLEEGAFRSSSNTL*YQLLMDGSVCDTMI Trigger: AATCATTGTATCACACACAGACCCATCCATAAGCAGCTGGTATCACAAGGTGTTGGAAGAGCTTCTAAATGCACCCTCCTCAAGTCTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS CCA 90 bp | TGCTGCTGGCTTGAGAGTCTACAGATCTTATATCCTCCAGTAGGCTaGATTGCACTAGATTGTGCTCCTTTAAATGGCCACATTAGGACT | + |
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Preference number: 5 (lower is better) Translates to: CCWLESLQILYPPVG*IALDCAPLNGHIRT Trigger: AGTCCTAATGTGGCCATTTAAAGGAGCACAATCTAGTGCAATCCAGCCTACTGGAGGATATAAGATCTGTAGACTCTCAAGCCAGCAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647679.1 |
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| CDS TCA 90 bp | TTTTCCTGCTGTTTCACCCGGATCTACTTCTCCAGCAGATTTGTGTaGAGGCTTTTCTATTGTATCTGCAGGCCTTTCTTCCTGGTAAAC | + |
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Preference number: 5 (lower is better) Translates to: FSCCFTRIYFSSRFV*RLFYCICRPFFLVN Trigger: GTTTACCAGGAAGAAAGGCCTGCAGATACAATAGAAAAGCCTTCACACAAATCTGCTGGAGAAGTAGATCCGGGTGAAACAGCAGGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS TCA 90 bp | TTTTCCTGCTGTTTCACCCGGATCTACTTCTCCAGCAGATTTGTGTaGAGGCTTTTCTATTGTATCTGCAGGCCTTTCTTCCTTCCAACA | + |
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Preference number: 5 (lower is better) Translates to: FSCCFTRIYFSSRFV*RLFYCICRPFFLPT Trigger: TGTTGGAAGGAAGAAAGGCCTGCAGATACAATAGAAAAGCCTTCACACAAATCTGCTGGAGAAGTAGATCCGGGTGAAACAGCAGGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000647679.1 ENST00000654320.1 ENST00000660628.1 |
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| CDS TCA 90 bp | TTTTCCTGCTGTTTCACCCGGATCTACTTCTCCAGCAGATTTGTGTaGAGGCTTTTCTATTGTATCTGCAGGCCTTTCTTCACTTCTGGA | + |
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Preference number: 5 (lower is better) Translates to: FSCCFTRIYFSSRFV*RLFYCICRPFFTSG Trigger: TCCAGAAGTGAAGAAAGGCCTGCAGATACAATAGAAAAGCCTTCACACAAATCTGCTGGAGAAGTAGATCCGGGTGAAACAGCAGGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653351.1 |
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| CDS GCA 90 bp | GTGCTTGACCATGTTGCATTTTTCTTAGTGACTCCAGTTCCAAGATaGAATAGGAAGAAGTGTTTGGATCCTCCCCCTGGGATTGATAAC | + |
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Preference number: 5 (lower is better) Translates to: VLDHVAFFLVTPVPR*NRKKCLDPPPGIDN Trigger: GTTATCAATCCCAGGGGGAGGATCCAAACACTTCTTCCTATTGCATCTTGGAACTGGAGTCACTAAGAAAAATGCAACATGGTCAAGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS TCA 90 bp | ATATCTGGGGCATGTTCGTACAATTTACTTGTTGCTAAGAGTGCATaGGCTTTCACCCTTGGGTTACAGTCAGAAGATCACTGCCATAAG | + |
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Preference number: 5 (lower is better) Translates to: ISGACSYNLLVAKSA*AFTLGLQSEDHCHK Trigger: CTTATGGCAGTGATCTTCTGACTGTAACCCAAGGGTGAAAGCTCATGCACTCTTAGCAACAAGTAAATTGTACGAACATGCCCCAGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000569476.2 ENST00000653351.1 ENST00000654320.1 |
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| CDS GCA 90 bp | GAGTCATGGGTTGCTTATGACCCTACTAGTAGGAGATCTGAGATATaGATTTTTACGACAGTTTTCCTGCTGTTTCACCCGGATCTACTT | + |
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Preference number: 5 (lower is better) Translates to: ESWVAYDPTSRRSEI*IFTTVFLLFHPDLL Trigger: AAGTAGATCCGGGTGAAACAGCAGGAAAACTGTCGTAAAAATGCATATCTCAGATCTCCTACTAGTAGGGTCATAAGCAACCCATGACTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000653351.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CCA 90 bp | CAGCAATTCTATCCTGATCTCTGTGTTTTACTGTCTGCTCTTTTCTaGCTGCTTGTAGTTAGAAGTGATTTCCTTGAAATGCGTGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: QQFYPDLCVLLSALF*LLVVRSDFLEMREA Trigger: AGCCTCACGCATTTCAAGGAAATCACTTCTAACTACAAGCAGCCAGAAAAGAGCAGACAGTAAAACACAGAGATCAGGATAGAATTGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569476.2 |
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| CDS CCA 72 bp | GCGTGTAGGCCAATTGCCCATTCTCAGCCACCTGCCTaGGTGACCTGCCTGGGTGACGTGCTAGCCATAAGG | + |
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Preference number: 6 (lower is better) Translates to: ACRPIAHSQPPA*VTCLGDVLAIR Trigger: CCTTATGGCTAGCACGTCACCCAGGCAGGTCACCCAGGCAGGTGGCTGAGAATGGGCAATTGGCCTACACGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CCA 72 bp | GCCAAGAATGATTCGAGCCTCACCTTCCAACAGAGATaGCATCCTCTCACCCGCCAGCAAGGGGGTGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: AKNDSSLTFQQR*HPLTRQQGGGS Trigger: TGACCCACCCCCTTGCTGGCGGGTGAGAGGATGCCATCTCTGTTGGAAGGTGAGGCTCGAATCATTCTTGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS GCA 72 bp | TATTTCAGACTCCATGGAGGAGGGGTTGGGTTCTTCTaGTTCAGCCCGACAGGGGTGCGTGTAGGCCAATTG | + |
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Preference number: 6 (lower is better) Translates to: YFRLHGGGVGFF*FSPTGVRVGQL Trigger: CAATTGGCCTACACGCACCCCTGTCGGGCTGAAGCAGAAGAACCCAACCCCTCCTCCATGGAGTCTGAAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS TCA 72 bp | CCATTCCCATCACCCTGGTCATGTCTCCATCATCTGTaGCATTTGCCTCAGCCTCCATCCAGCAGGACTGAG | + |
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Preference number: 6 (lower is better) Translates to: PFPSPWSCLHHL*HLPQPPSSRTE Trigger: CTCAGTCCTGCTGGATGGAGGCTGAGGCAAATGTCACAGATGATGGAGACATGACCAGGGTGATGGGAATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000653351.1 ENST00000654320.1 |
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| CDS TCA 72 bp | GTGAGGTGTAGTTCAATGCTGAAAGTCACTTTGGCATaGTGGCTGGTTGTGCCTGGAAGTGTCACTTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: VRCSSMLKVTLA*WLVVPGSVTCC Trigger: GCAGCAAGTGACACTTCCAGGCACAACCAGCCATCATGCCAAAGTGACTTTCAGCATTGAACTACACCTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647679.1 |
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| CDS CCA 72 bp | CAGGAACATACCCAGTTTTTACTATTTCAGACTCCATaGAGGAGGGGTTGGGTTCTTCTGCTTCAGCCCGAC | + |
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Preference number: 6 (lower is better) Translates to: QEHTQFLLFQTP*RRGWVLLLQPD Trigger: GTCGGGCTGAAGCAGAAGAACCCAACCCCTCCTCCATGGAGTCTGAAATAGTAAAAACTGGGTATGTTCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CAA 72 bp | CACACTTCTGGAGGCTGGAAGTCAGAGAGTGAAATGTaGGCAGTGTTGGTGCCTTCTGAGATTGTGAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: HTSGGWKSESEM*AVLVPSEIVRG Trigger: TCCTCTCACAATCTCAGAAGGCACCAACACTGCCAACATTTCACTCTCTGACTTCCAGCCTCCAGAAGTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569476.2 |
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| CDS TCA 72 bp | TTGCCCCTCACATCCTTCACTGTCAAGAGGGTTTCCTaGTCAGAAGCTACGCTGTGTATCAGGCATACCATA | + |
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Preference number: 6 (lower is better) Translates to: LPLTSFTVKRVS*SEATLCIRHTI Trigger: TATGGTATGCCTGATACACAGCGTAGCTTCTGATCAGGAAACCCTCTTGACAGTGAAGGATGTGAGGGGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS TCA 72 bp | GAGGAGGGTGCATTTAGAAGCTCTTCCAACACCTTGTaGTACCAGCTGCTTATGGATGGGTCTGTGTGTGAT | + |
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Preference number: 6 (lower is better) Translates to: EEGAFRSSSNTL*YQLLMDGSVCD Trigger: ATCACACACAGACCCATCCATAAGCAGCTGGTATCACAAGGTGTTGGAAGAGCTTCTAAATGCACCCTCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS GCA 72 bp | GCAAGGGGGTGGGTCAGTCATAAATCCCCATCTTACTaGTGCATTTCTCAGGCTATTCTTGGCATCACTTGT | + |
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Preference number: 6 (lower is better) Translates to: ARGWVSHKSPSY*CISQAILGITC Trigger: ACAAGTGATGCCAAGAATAGCCTGAGAAATGCAGCAGTAAGATGGGGATTTATGACTGACCCACCCCCTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS GCA 72 bp | TGTGATACAATGATTGAAGCCCATGGGTTTGGGCTTTaGCCCTCACATCCTTCACTGTCAAGAGGGTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: CDTMIEAHGFGL*PSHPSLSRGFP Trigger: AGGAAACCCTCTTGACAGTGAAGGATGTGAGGGGCAAAGCCCAAACCCATGGGCTTCAATCATTGTATCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS CAA 72 bp | TCTACTTCTGGAGGCTGGAAGTCAGAGAGTGAAATGTaGGCAGTGTTGGTGCCTTCTGAGATTGTGAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: STSGGWKSESEM*AVLVPSEIVRG Trigger: TCCTCTCACAATCTCAGAAGGCACCAACACTGCCAACATTTCACTCTCTGACTTCCAGCCTCCAGAAGTAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000647679.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CAA 72 bp | TTCACTTCTGGAGGCTGGAAGTCAGAGAGTGAAATGTaGGCAGTGTTGGTGCCTTCTGAGATTGTGAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: FTSGGWKSESEM*AVLVPSEIVRG Trigger: TCCTCTCACAATCTCAGAAGGCACCAACACTGCCAACATTTCACTCTCTGACTTCCAGCCTCCAGAAGTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653351.1 |
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| CDS CAA 90 bp | TTCCAAGATGCAATAGGAAGAAGTGTTTGGATCCTCCCCCTGGGATaGATAACTGCTGTGAAGTGTTCTGCTCCGGAGAGCATAAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: FQDAIGRSVWILPLG*ITAVKCSAPESIRK Trigger: CTTCCTTATGCTCTCCGGAGCAGAACACTTCACAGCAGTTATCAATCCCAGGGGGAGGATCCAAACACTTCTTCCTATTGCATCTTGGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CAA 90 bp | CACCCGGATCTACTTCTCCAGCAGATTTGTGTGAAGGCTTTTCTATaGTATCTGCAGGCCTTTCTTCCTGGTAAACTTTGGGCACAAGGA | + |
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Preference number: 6 (lower is better) Translates to: HPDLLLQQICVKAFL*YLQAFLPGKLWAQG Trigger: TCCTTGTGCCCAAAGTTTACCAGGAAGAAAGGCCTGCAGATACAATAGAAAAGCCTTCACACAAATCTGCTGGAGAAGTAGATCCGGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS CAA 90 bp | GACAGTTTTCCTGCTGTTTCACCCGGATCTACTTCTCCAGCAGATTaGTGTGAAGGCTTTTCTATTGTATCTGCAGGCCTTTCTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: DSFPAVSPGSTSPAD*CEGFSIVSAGLSSW Trigger: CCAGGAAGAAAGGCCTGCAGATACAATAGAAAAGCCTTCACACAAATCTGCTGGAGAAGTAGATCCGGGTGAAACAGCAGGAAAACTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS TCA 72 bp | GTGAAATGTTGGCAGTGTTGGTGCCTTCTGAGATTGTaGGAGGATCTGCTTAAGACCTCTCTTGTTGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: VKCWQCWCLLRL*EDLLKTSLVGL Trigger: CAAGCCAACAAGAGAGGTCTTAAGCAGATCCTCTCACAATCTCAGAAGGCACCAACACTGCCAACATTTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000653351.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CCA 72 bp | TATTGTATCTGCAGGCCTTTCTTCACTTCTGGAGGCTaGAAGTCAGAGAGTGAAATGTTGGCAGTGTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: YCICRPFFTSGG*KSESEMLAVLV Trigger: CACCAACACTGCCAACATTTCACTCTCTGACTTCCAGCCTCCAGAAGTGAAGAAAGGCCTGCAGATACAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653351.1 |
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| CDS CAA 72 bp | GCTGTGAAGTGTTCTGCTCCGGAGAGCATAAGGAAGTaGGGAGAGATGTCAAACAGCAATTCTATCCTGATC | + |
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Preference number: 6 (lower is better) Translates to: AVKCSAPESIRK*GEMSNSNSILI Trigger: GATCAGGATAGAATTGCTGTTTGACATCTCTCCCAACTTCCTTATGCTCTCCGGAGCAGAACACTTCACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CAA 72 bp | GTGACTCCAGTTCCAAGATGCAATAGGAAGAAGTGTTaGGATCCTCCCCCTGGGATTGATAACTGCTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: VTPVPRCNRKKC*DPPPGIDNCCE Trigger: TTCACAGCAGTTATCAATCCCAGGGGGAGGATCCAAACACTTCTTCCTATTGCATCTTGGAACTGGAGTCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CAA 72 bp | CCTGCTGTTTCACCCGGATCTACTTCTCCAGCAGATTaGTGTGAAGGCTTTTCTATTGTATCTGCAGGCCTT | + |
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Preference number: 6 (lower is better) Translates to: PAVSPGSTSPAD*CEGFSIVSAGL Trigger: AAGGCCTGCAGATACAATAGAAAAGCCTTCACACAAATCTGCTGGAGAAGTAGATCCGGGTGAAACAGCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000653351.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CAA 90 bp | GACAGTTTTCCTGCTGTTTCACCCGGATCTACTTCTCCAGCAGATTaGTGTGAAGGCTTTTCTATTGTATCTGCAGGCCTTTCTTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: DSFPAVSPGSTSPAD*CEGFSIVSAGLSSF Trigger: GAAGGAAGAAAGGCCTGCAGATACAATAGAAAAGCCTTCACACAAATCTGCTGGAGAAGTAGATCCGGGTGAAACAGCAGGAAAACTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000647679.1 ENST00000654320.1 ENST00000660628.1 |
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| CDS TCA 72 bp | GCCTTTCTTCCTGGTAAACTTTGGGCACAAGGAGTCTaGACTTCCCTGGTAGTCATAAATGGTAGTCCATTG | + |
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Preference number: 6 (lower is better) Translates to: AFLPGKLWAQGV*TSLVVINGSPL Trigger: CAATGGACTACCATTTATGACTACCAGGGAAGTTCAGACTCCTTGTGCCCAAAGTTTACCAGGAAGAAAGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS TCA 72 bp | GGAAGTTGGGAGAGATGTCAAACAGCAATTCTATCCTaGTCTACTTCTGGAGGCTGGAAGTCAGAGAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: GSWERCQTAILS*STSGGWKSESE Trigger: TTCACTCTCTGACTTCCAGCCTCCAGAAGTAGATCAGGATAGAATTGCTGTTTGACATCTCTCCCAACTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000647679.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS GCA 72 bp | CATGTTGCATTTTTCTTAGTGACTCCAGTTCCAAGATaGAATAGGAAGAAGTGTTTGGATCCTCCCCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: HVAFFLVTPVPR*NRKKCLDPPPG Trigger: CCCAGGGGGAGGATCCAAACACTTCTTCCTATTGCATCTTGGAACTGGAGTCACTAAGAAAAATGCAACATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CAA 72 bp | ACACTTGCTGCTTCTAGTCACCAAAATACACCAGCTTaGAGGAACAGGACCTTCAAGCTGATGAACCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: TLAASSHQNTPA*RNRTFKLMNPD Trigger: ATCTGGGTTCATCAGCTTGAAGGTCCTGTTCCTCAAAGCTGGTGTATTTTGGTGACTAGAAGCAGCAAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS CAA 90 bp | TTGATAACTGCTGTGAAGTGTTCTGCTCCGGAGAGCATAAGGAAGTaGGGAGAGATGTCAAACAGCAATTCTATCCTGATCTACTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: LITAVKCSAPESIRK*GEMSNSNSILIYFW Trigger: CCAGAAGTAGATCAGGATAGAATTGCTGTTTGACATCTCTCCCAACTTCCTTATGCTCTCCGGAGCAGAACACTTCACAGCAGTTATCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000647679.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CAA 90 bp | GACAGTTTTCCTGCTGTTTCACCCGGATCTACTTCTCCAGCAGATTaGTGTGAAGGCTTTTCTATTGTATCTGCAGGCCTTTCTTCACTT | + |
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Preference number: 6 (lower is better) Translates to: DSFPAVSPGSTSPAD*CEGFSIVSAGLSSL Trigger: AAGTGAAGAAAGGCCTGCAGATACAATAGAAAAGCCTTCACACAAATCTGCTGGAGAAGTAGATCCGGGTGAAACAGCAGGAAAACTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653351.1 |
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| CDS TCA 72 bp | TGTTTCACCCGGATCTACTTCTCCAGCAGATTTGTGTaGAGGCTTTTCTATTGTATCTGCAGGCCTTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: CFTRIYFSSRFV*RLFYCICRPFF Trigger: GAAGAAAGGCCTGCAGATACAATAGAAAAGCCTTCACACAAATCTGCTGGAGAAGTAGATCCGGGTGAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000653351.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CCA 72 bp | CTTGAGAGTCTACAGATCTTATATCCTCCAGTAGGCTaGATTGCACTAGATTGTGCTCCTTTAAATGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: LESLQILYPPVG*IALDCAPLNGH Trigger: GTGGCCATTTAAAGGAGCACAATCTAGTGCAATCCAGCCTACTGGAGGATATAAGATCTGTAGACTCTCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647679.1 |
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| CDS CAA 90 bp | TTGATAACTGCTGTGAAGTGTTCTGCTCCGGAGAGCATAAGGAAGTaGGGAGAGATGTCAAACAGCAATTCTATCCTGATCTCTGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: LITAVKCSAPESIRK*GEMSNSNSILISVF Trigger: AAACACAGAGATCAGGATAGAATTGCTGTTTGACATCTCTCCCAACTTCCTTATGCTCTCCGGAGCAGAACACTTCACAGCAGTTATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569476.2 |
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| CDS TCA 72 bp | GCATGTTCGTACAATTTACTTGTTGCTAAGAGTGCATaGGCTTTCACCCTTGGGTTACAGTCAGAAGATCAC | + |
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Preference number: 6 (lower is better) Translates to: ACSYNLLVAKSA*AFTLGLQSEDH Trigger: GTGATCTTCTGACTGTAACCCAAGGGTGAAAGCTCATGCACTCTTAGCAACAAGTAAATTGTACGAACATGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000569476.2 ENST00000653351.1 ENST00000654320.1 |
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| CDS GCA 72 bp | GGAGATCTGAGATATGCATTTTTACGACAGTTTTCCTaGTGTTTCACCCGGATCTACTTCTCCAGCAGATTT | + |
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Preference number: 6 (lower is better) Translates to: GDLRYAFLRQFS*CFTRIYFSSRF Trigger: AAATCTGCTGGAGAAGTAGATCCGGGTGAAACAGCAGGAAAACTGTCGTAAAAATGCATATCTCAGATCTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000653351.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS GCA 72 bp | GTTGCTTATGACCCTACTAGTAGGAGATCTGAGATATaGATTTTTACGACAGTTTTCCTGCTGTTTCACCCG | + |
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Preference number: 6 (lower is better) Translates to: VAYDPTSRRSEI*IFTTVFLLFHP Trigger: CGGGTGAAACAGCAGGAAAACTGTCGTAAAAATGCATATCTCAGATCTCCTACTAGTAGGGTCATAAGCAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000653351.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CAA 90 bp | GTTCGTACAATTTACTTGTTGCTAAGAGTGCATGAGCTTTCACCCTaGGGTTACAGTCAGAAGATCACTGCCATAAGAAGAATAAACCCG | + |
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Preference number: 6 (lower is better) Translates to: VRTIYLLLRVHELSP*GYSQKITAIRRINP Trigger: CGGGTTTATTCTTCTTATGGCAGTGATCTTCTGACTGTAACCCAAGGGTGAAAGCTCATGCACTCTTAGCAACAAGTAAATTGTACGAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000569476.2 ENST00000653351.1 ENST00000654320.1 |
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| CDS CCA 72 bp | GTGCACTCCTTTGTTCCGTTTAAGCTCGTAAGTCAATaGTCCTCAGGAACATACCCAGTTTTTACTATTTCA | + |
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Preference number: 6 (lower is better) Translates to: VHSFVPFKLVSQ*SSGTYPVFTIS Trigger: TGAAATAGTAAAAACTGGGTATGTTCCTGAGGACCATTGACTTACGAGCTTAAACGGAACAAAGGAGTGCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000569476.2 ENST00000647679.1 ENST00000654320.1 ENST00000660628.1 ENST00000662619.1 |
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| CDS CAA 72 bp | TTGAGGAACAGGACCTTCAAGCTGATGAACCCAGATTaGCAGAGATGGGAAGCAAATCCTTCATTAAATCAA | + |
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Preference number: 6 (lower is better) Translates to: LRNRTFKLMNPD*QRWEANPSLNQ Trigger: TTGATTTAATGAAGGATTTGCTTCCCATCTCTGCAAATCTGGGTTCATCAGCTTGAAGGTCCTGTTCCTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS CAA 72 bp | ATTTACTTGTTGCTAAGAGTGCATGAGCTTTCACCCTaGGGTTACAGTCAGAAGATCACTGCCATAAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: IYLLLRVHELSP*GYSQKITAIRR Trigger: TCTTCTTATGGCAGTGATCTTCTGACTGTAACCCAAGGGTGAAAGCTCATGCACTCTTAGCAACAAGTAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000569476.2 ENST00000653351.1 ENST00000654320.1 |
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| CDS CAA 72 bp | AAGAAATATCTGGGGCATGTTCGTACAATTTACTTGTaGCTAAGAGTGCATGAGCTTTCACCCTTGGGTTAC | + |
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Preference number: 6 (lower is better) Translates to: KKYLGHVRTIYL*LRVHELSPLGY Trigger: GTAACCCAAGGGTGAAAGCTCATGCACTCTTAGCAACAAGTAAATTGTACGAACATGCCCCAGATATTTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000569476.2 ENST00000653351.1 ENST00000654320.1 |
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| CDS GCA 72 bp | TTTAGAAACCCAAATGTTTCCGTTTGCCGTGGCTGCTaGAACAAATTATTATTAATCAGGCGCCTTAAACAG | + |
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Preference number: 6 (lower is better) Translates to: FRNPNVSVCRGC*NKLLLIRRLKQ Trigger: CTGTTTAAGGCGCCTGATTAATAATAATTTGTTGCAGCAGCCACGGCAAACGGAAACATTTGGGTTTCTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569476.2 |
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| CDS GCA 72 bp | GTCTTTAGAAACCCAAATGTTTCCGTTTGCCGTGGCTaGTGCAACAAATTATTATTAATCAGGCGCCTTAAA | + |
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Preference number: 6 (lower is better) Translates to: VFRNPNVSVCRG*CNKLLLIRRLK Trigger: TTTAAGGCGCCTGATTAATAATAATTTGTTGCAGCAGCCACGGCAAACGGAAACATTTGGGTTTCTAAAGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569476.2 |
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| CDS CCA 72 bp | AGTGTAGTAAGTGGAGTTACTCGTTTTTCTCCTCCTTaGTTTCAAGACCTTCTGTTCTTTCTAATGATGAAC | + |
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Preference number: 6 (lower is better) Translates to: SVVSGVTRFSPP*FQDLLFFLMMN Trigger: GTTCATCATTAGAAAGAACAGAAGGTCTTGAAACCAAGGAGGAGAAAAACGAGTAACTCCACTTACTACACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS CAA 90 bp | TCTGTCAGTCACTGCACATCTATTCACATTATTAGGAAAGAATCCTaGATTACATTCCCTTATGATGATGAGGAATTGGCATCAAATGGG | + |
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Preference number: 6 (lower is better) Translates to: SVSHCTSIHIIRKES*ITFPYDDEELASNG Trigger: CCCATTTGATGCCAATTCCTCATCATCATAAGGGAATGTAATCAAGGATTCTTTCCTAATAATGTGAATAGATGTGCAGTGACTGACAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000569476.2 ENST00000653351.1 ENST00000654320.1 |
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| CDS CAA 72 bp | AAGTGTAGTAAGTGGAGTTACTCGTTTTTCTCCTCCTaGGTTTCAAGACCTTCTGTTCTTTCTAATGATGAA | + |
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Preference number: 6 (lower is better) Translates to: KCSKWSYSFFSS*VSRPSVLSNDE Trigger: TTCATCATTAGAAAGAACAGAAGGTCTTGAAACCAAGGAGGAGAAAAACGAGTAACTCCACTTACTACACTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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| CDS CAA 90 bp | ATCAATAGGAAGTGTAGTAAGTGGAGTTACTCGTTTTTCTCCTCCTaGGTTTCAAGACCTTCTGTTCTTTCTAATGATGAACAACTTTTT | + |
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Preference number: 6 (lower is better) Translates to: INRKCSKWSYSFFSS*VSRPSVLSNDEQLF Trigger: AAAAAGTTGTTCATCATTAGAAAGAACAGAAGGTCTTGAAACCAAGGAGGAGAAAAACGAGTAACTCCACTTACTACACTTCCTATTGAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000569476.2 ENST00000662619.1 |
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