Pregenerated sensors for LINC00539 (Homo sapiens)
Ensembl gene IDs: ENSG00000224429Ensembl transcript IDs: ENST00000411525.1, ENST00000434601.7, ENST00000608957.5, ENST00000655569.1, ENST00000657403.1, ENST00000659153.1, ENST00000659380.1, ENST00000661173.1, ENST00000661286.1, ENST00000664989.1, ENST00000667082.1, ENST00000670912.1
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGGGATGTGCCCGCTGTCAGCTGGCCAGCTTGTGGTGCAGCTAGCTaGCAGCCCAGGCAGGGTATCTGTCGAGCTCTTCTTCTTTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: RDVPAVSWPACGAAS*QPRQGICRALLLSP Trigger: AGGAGAAAGAAGAAGAGCTCGACAGATACCCTGCCTGGGCTGGCAGCTAGCTGCACCACAAGCTGGCCAGCTGACAGCGGGCACATCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000434601.7 ENST00000655569.1 ENST00000657403.1 ENST00000659153.1 ENST00000661173.1 ENST00000661286.1 ENST00000664989.1 ENST00000667082.1 ENST00000670912.1 |
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| CDS GCA 90 bp | CCATTTTCACAAGAGGGAAGAAAGGCACTGGGTGATGAAGGGATGTaGCCGCTGTCAGCTGGCCAGCTTGTGGTGCAGCTAGCTGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: PFSQEGRKALGDEGM*PLSAGQLVVQLAAS Trigger: GCTGGCAGCTAGCTGCACCACAAGCTGGCCAGCTGACAGCGGGCACATCCCTTCATCACCCAGTGCCTTTCTTCCCTCTTGTGAAAATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 9 transcripts: ENST00000434601.7 ENST00000655569.1 ENST00000657403.1 ENST00000659153.1 ENST00000661173.1 ENST00000661286.1 ENST00000664989.1 ENST00000667082.1 ENST00000670912.1 |
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| CDS GCA 90 bp | TGCAGAGGTGATGAGATGATGACTGCAAAGACACAGCACGGTGCGTaGCACAGAGGAGGTGGGGTTCAGTCGATAGTCCTGAATCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: CRGDEMMTAKTQHGA*HRGGGVQSIVLNPP Trigger: AGGAGGATTCAGGACTATCGACTGAACCCCACCTCCTCTGTGGCACGCACCGTGCTGTGTCTTTGCAGTCATCATCTCATCACCTCTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000411525.1 ENST00000434601.7 ENST00000608957.5 ENST00000659380.1 |
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| CDS GCA 90 bp | GAGCCTCCATTTCCTCATCACAAAATGGGGGAGATAATCTTCCTGTaGAGAGGTGATGAGATGATGACTGCAAAGACACAGCACGGTGCG | + |
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Preference number: 5 (lower is better) Translates to: EPPFPHHKMGEIIFL*RGDEMMTAKTQHGA Trigger: CGCACCGTGCTGTGTCTTTGCAGTCATCATCTCATCACCTCTGCACAGGAAGATTATCTCCCCCATTTTGTGATGAGGAAATGGAGGCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000411525.1 ENST00000434601.7 ENST00000608957.5 ENST00000659380.1 |
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| CDS GCA 90 bp | GAGCACCTACTGTGTGCCAGACACTGTCTAGGCACCAGGGATACATaGAGGAATGAAACCGACACAATCTGTTACTTCACGGAGTTTATA | + |
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Preference number: 5 (lower is better) Translates to: EHLLCARHCLGTRDT*RNETDTICYFTEFI Trigger: TATAAACTCCGTGAAGTAACAGATTGTGTCGGTTTCATTCCTGCATGTATCCCTGGTGCCTAGACAGTGTCTGGCACACAGTAGGTGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661173.1 ENST00000661286.1 |
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| CDS TCA 90 bp | ACTGTGTGCCAGACACTGTCTAGGCACCAGGGATACATGCAGGAATaGAACCGACACAATCTGTTACTTCACGGAGTTTATATTCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: TVCQTLSRHQGYMQE*NRHNLLLHGVYILA Trigger: TGCCAGAATATAAACTCCGTGAAGTAACAGATTGTGTCGGTTTCATTCCTGCATGTATCCCTGGTGCCTAGACAGTGTCTGGCACACAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661173.1 ENST00000661286.1 |
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| CDS CCA 90 bp | CATCATATCCCCATTCAATCCATCTACATGGTCTCTAATTGGATGTaGTATCTTTACTGGAACAGAGCAGCACAGCCTTTGGTTCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: HHIPIQSIYMVSNWM*YLYWNRAAQPLVPG Trigger: CCCAGGAACCAAAGGCTGTGCTGCTCTGTTCCAGTAAAGATACCACATCCAATTAGAGACCATGTAGATGGATTGAATGGGGATATGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000664989.1 ENST00000670912.1 |
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| CDS TCA 90 bp | GAAGCAGGATTTTCTATCAGCCTGAAGGAGCCGACTATGCAGGAATaGAACCGACACAATCTGTTACTTCACGGAGTTTATATTCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: EAGFSISLKEPTMQE*NRHNLLLHGVYILA Trigger: TGCCAGAATATAAACTCCGTGAAGTAACAGATTGTGTCGGTTTCATTCCTGCATAGTCGGCTCCTTCAGGCTGATAGAAAATCCTGCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667082.1 |
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| CDS GCA 90 bp | TTCAACAGATCCAACAGTGCTCGGGGTATCCATGGTAGGAAAGGATaGTATAGGAAATCTTGGACAAACCCTAATAGATTTGCAGTACAG | + |
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Preference number: 5 (lower is better) Translates to: FNRSNSARGIHGRKG*YRKSWTNPNRFAVQ Trigger: CTGTACTGCAAATCTATTAGGGTTTGTCCAAGATTTCCTATAGCATCCTTTCCTACCATGGATACCCCGAGCACTGTTGGATCTGTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667082.1 |
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| CDS CCA 90 bp | CATCCTCATCATATCCCCATTCAATCCATCTACATGGTCTCTAATTaGATGTGGTATCTTTACTGGAACAGAGCAGCACAGCCTTTGGTT | + |
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Preference number: 5 (lower is better) Translates to: HPHHIPIQSIYMVSN*MWYLYWNRAAQPLV Trigger: AACCAAAGGCTGTGCTGCTCTGTTCCAGTAAAGATACCACATCCAATTAGAGACCATGTAGATGGATTGAATGGGGATATGATGAGGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000664989.1 ENST00000670912.1 |
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| CDS GCA 90 bp | TACCACATTTTCTTTGTCCATTCATCTGTTCATGGACACTTGGGTTaGTTCCTAATCTTGGATGTTGTGAACAGAGCTGCAACAACCATG | + |
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Preference number: 5 (lower is better) Translates to: YHIFFVHSSVHGHLG*FLILDVVNRAATTM Trigger: CATGGTTGTTGCAGCTCTGTTCACAACATCCAAGATTAGGAAGCAACCCAAGTGTCCATGAACAGATGAATGGACAAAGAAAATGTGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000661173.1 ENST00000661286.1 ENST00000667082.1 |
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| CDS TCA 90 bp | TTGGATTTTAGGAGGCAGCCAATATTGCACTTGAGATTATTTCTTTaGCTCATTTCTTGGGTCATTAGAAGTCTACCAGTTTTGAGTGGA | + |
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Preference number: 5 (lower is better) Translates to: LDFRRQPILHLRLFL*LISWVIRSLPVLSG Trigger: TCCACTCAAAACTGGTAGACTTCTAATGACCCAAGAAATGAGTCAAAGAAATAATCTCAAGTGCAATATTGGCTGCCTCCTAAAATCCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000667082.1 |
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| CDS GCA 72 bp | CCCGCTGTCAGCTGGCCAGCTTGTGGTGCAGCTAGCTaGCAGCCCAGGCAGGGTATCTGTCGAGCTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: PAVSWPACGAAS*QPRQGICRALL Trigger: AAGAAGAGCTCGACAGATACCCTGCCTGGGCTGGCAGCTAGCTGCACCACAAGCTGGCCAGCTGACAGCGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000434601.7 ENST00000655569.1 ENST00000657403.1 ENST00000659153.1 ENST00000661173.1 ENST00000661286.1 ENST00000664989.1 ENST00000667082.1 ENST00000670912.1 |
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| CDS CCA 72 bp | TTGGGCACCAGACATGGTAGCTCCATTCCAGACAGCTaGAGAGAGGAAGGGACCCGTGGCAGACGGCATCAT | + |
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Preference number: 6 (lower is better) Translates to: LGTRHGSSIPDS*REEGTRGRRHH Trigger: ATGATGCCGTCTGCCACGGGTCCCTTCCTCTCTCCAGCTGTCTGGAATGGAGCTACCATGTCTGGTGCCCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000411525.1 |
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| CDS GCA 72 bp | GATGAGATGATGACTGCAAAGACACAGCACGGTGCGTaGCACAGAGGAGGTGGGGTTCAGTCGATAGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: DEMMTAKTQHGA*HRGGGVQSIVL Trigger: CAGGACTATCGACTGAACCCCACCTCCTCTGTGGCACGCACCGTGCTGTGTCTTTGCAGTCATCATCTCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000411525.1 ENST00000434601.7 ENST00000608957.5 ENST00000659380.1 |
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| CDS CCA 72 bp | TGCAAAGACACAGCACGGTGCGTGCCACAGAGGAGGTaGGGTTCAGTCGATAGTCCTGAATCCTCCTGCTTA | + |
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Preference number: 6 (lower is better) Translates to: CKDTARCVPQRR*GSVDSPESSCL Trigger: TAAGCAGGAGGATTCAGGACTATCGACTGAACCCCACCTCCTCTGTGGCACGCACCGTGCTGTGTCTTTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000411525.1 ENST00000434601.7 ENST00000608957.5 ENST00000659380.1 |
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| CDS TCA 72 bp | ACTGAGCAGCTGGTAGAGCCCTCACGTTTTGTTTCCTaGCCCTATTCCAGTGGAATGGCTGAGATCGATGCC | + |
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Preference number: 6 (lower is better) Translates to: TEQLVEPSRFVS*PYSSGMAEIDA Trigger: GGCATCGATCTCAGCCATTCCACTGGAATAGGGTCAGGAAACAAAACGTGAGGGCTCTACCAGCTGCTCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000608957.5 ENST00000657403.1 ENST00000659153.1 ENST00000661173.1 ENST00000667082.1 ENST00000670912.1 |
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| CDS CCA 72 bp | GCACAGCCTTTGGTTCCTGGGTTGTGGCTATCCATCTaGCAAACAAGTCATCTTCCAACCTCCTCAGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: AQPLVPGLWLSI*QTSHLPTSSGR Trigger: CCTTCCTGAGGAGGTTGGAAGATGACTTGTTTGCCAGATGGATAGCCACAACCCAGGAACCAAAGGCTGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000664989.1 ENST00000667082.1 ENST00000670912.1 |
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| CDS CCA 72 bp | GGCAAACAAGTCATCTTCCAACCTCCTCAGGAAGGATaGTCAAGATCAGTTCCGTGGCAGACGGCATCATCT | + |
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Preference number: 6 (lower is better) Translates to: GKQVIFQPPQEG*SRSVPWQTASS Trigger: AGATGATGCCGTCTGCCACGGAACTGATCTTGACCATCCTTCCTGAGGAGGTTGGAAGATGACTTGTTTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664989.1 |
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| CDS CAA 72 bp | GCAGTGATGATGAGGGTGTTAGGGCTCACCCTGTCTTaGCTTCCTCAGTTCCAGTGTGCTCAATTGGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: AVMMRVLGLTLS*LPQFQCAQLER Trigger: CCTTTCCAATTGAGCACACTGGAACTGAGGAAGCAAAGACAGGGTGAGCCCTAACACCCTCATCATCACTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000608957.5 ENST00000657403.1 ENST00000659153.1 ENST00000664989.1 ENST00000667082.1 ENST00000670912.1 |
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| CDS TCA 72 bp | CCTCAGTTCCAGTGTGCTCAATTGGAAAGGATAGACTaGGCAGCTGGTAGAGCCCTCACGTTTTGTTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: PQFQCAQLERID*AAGRALTFCFL Trigger: CAGGAAACAAAACGTGAGGGCTCTACCAGCTGCTCAGTCTATCCTTTCCAATTGAGCACACTGGAACTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000608957.5 ENST00000657403.1 ENST00000659153.1 ENST00000661173.1 ENST00000667082.1 ENST00000670912.1 |
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| CDS TCA 72 bp | CCTCAGTTCCAGTGTGCTCAATTGGAAAGGATAGACTaGGCAGCTGGTAGAGCCCTCACGTTTTGTTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: PQFQCAQLERID*AAGRALTFCFP Trigger: AGGGAAACAAAACGTGAGGGCTCTACCAGCTGCTCAGTCTATCCTTTCCAATTGAGCACACTGGAACTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664989.1 |
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| CDS CAA 72 bp | TACTGGAACAGAGCAGCACAGCCTTTGGTTCCTGGGTaGTGGCTATCCATCTGGCAAACAAGTCATCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: YWNRAAQPLVPG*WLSIWQTSHLP Trigger: TGGAAGATGACTTGTTTGCCAGATGGATAGCCACAACCCAGGAACCAAAGGCTGTGCTGCTCTGTTCCAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000664989.1 ENST00000667082.1 ENST00000670912.1 |
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| CDS TCA 72 bp | AGCCAGGGTCCTGTACACATAGGGCATTTCTTACAATaGCATCAGCAGAACCTGAAATGCCACGATGACAGC | + |
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Preference number: 6 (lower is better) Translates to: SQGPVHIGHFLQ*HQQNLKCHDDS Trigger: GCTGTCATCGTGGCATTTCAGGTTCTGCTGATGTCATTGTAAGAAATGCCCTATGTGTACAGGACCCTGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667082.1 |
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| CDS CCA 72 bp | TGTGGTATCTTTACTGGAACAGAGCAGCACAGCCTTTaGTTCCTGGGTTGTGGCTATCCATCTGGCAAACAA | + |
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Preference number: 6 (lower is better) Translates to: CGIFTGTEQHSL*FLGCGYPSGKQ Trigger: TTGTTTGCCAGATGGATAGCCACAACCCAGGAACCAAAGGCTGTGCTGCTCTGTTCCAGTAAAGATACCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000664989.1 ENST00000667082.1 ENST00000670912.1 |
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| CDS CAA 72 bp | ATGTGGTATCTTTACTGGAACAGAGCAGCACAGCCTTaGGTTCCTGGGTTGTGGCTATCCATCTGGCAAACA | + |
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Preference number: 6 (lower is better) Translates to: MWYLYWNRAAQP*VPGLWLSIWQT Trigger: TGTTTGCCAGATGGATAGCCACAACCCAGGAACCAAAGGCTGTGCTGCTCTGTTCCAGTAAAGATACCACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000664989.1 ENST00000667082.1 ENST00000670912.1 |
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| CDS TCA 72 bp | CAGACACTGTCTAGGCACCAGGGATACATGCAGGAATaGAACCGACACAATCTGTTACTTCACGGAGTTTAT | + |
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Preference number: 6 (lower is better) Translates to: QTLSRHQGYMQE*NRHNLLLHGVY Trigger: ATAAACTCCGTGAAGTAACAGATTGTGTCGGTTTCATTCCTGCATGTATCCCTGGTGCCTAGACAGTGTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661173.1 ENST00000661286.1 |
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| CDS CCA 72 bp | CCCATTCAATCCATCTACATGGTCTCTAATTGGATGTaGTATCTTTACTGGAACAGAGCAGCACAGCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: PIQSIYMVSNWM*YLYWNRAAQPL Trigger: CAAAGGCTGTGCTGCTCTGTTCCAGTAAAGATACCACATCCAATTAGAGACCATGTAGATGGATTGAATGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000664989.1 ENST00000670912.1 |
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| CDS CAA 72 bp | TCATCTGTTCATGGACACTTGGGTTGCTTCCTAATCTaGGATGTTGTGAACAGAGCTGCAACAACCATGGAA | + |
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Preference number: 6 (lower is better) Translates to: SSVHGHLGCFLI*DVVNRAATTME Trigger: TTCCATGGTTGTTGCAGCTCTGTTCACAACATCCAAGATTAGGAAGCAACCCAAGTGTCCATGAACAGATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000661173.1 ENST00000661286.1 ENST00000667082.1 |
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| CDS TCA 72 bp | CATAAACATATGTATTTCCTGTTGGTCCTGCTTCTTTaGCTAGCCTTGACTAACAGAACCATCAGACCCAGG | + |
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Preference number: 6 (lower is better) Translates to: HKHMYFLLVLLL*LALTNRTIRPR Trigger: CCTGGGTCTGATGGTTCTGTTAGTCAAGGCTAGTCAAAGAAGCAGGACCAACAGGAAATACATATGTTTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000411525.1 |
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| CDS TCA 72 bp | TTTTCTATCAGCCTGAAGGAGCCGACTATGCAGGAATaGAACCGACACAATCTGTTACTTCACGGAGTTTAT | + |
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Preference number: 6 (lower is better) Translates to: FSISLKEPTMQE*NRHNLLLHGVY Trigger: ATAAACTCCGTGAAGTAACAGATTGTGTCGGTTTCATTCCTGCATAGTCGGCTCCTTCAGGCTGATAGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667082.1 |
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| CDS GCA 72 bp | TTCTTTGTCCATTCATCTGTTCATGGACACTTGGGTTaGTTCCTAATCTTGGATGTTGTGAACAGAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: FFVHSSVHGHLG*FLILDVVNRAA Trigger: TGCAGCTCTGTTCACAACATCCAAGATTAGGAAGCAACCCAAGTGTCCATGAACAGATGAATGGACAAAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000661173.1 ENST00000661286.1 ENST00000667082.1 |
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| CDS GCA 72 bp | TCCAACAGTGCTCGGGGTATCCATGGTAGGAAAGGATaGTATAGGAAATCTTGGACAAACCCTAATAGATTT | + |
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Preference number: 6 (lower is better) Translates to: SNSARGIHGRKG*YRKSWTNPNRF Trigger: AAATCTATTAGGGTTTGTCCAAGATTTCCTATAGCATCCTTTCCTACCATGGATACCCCGAGCACTGTTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667082.1 |
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| CDS CAA 72 bp | TTTCTTTGTCCATTCATCTGTTCATGGACACTTGGGTaGCTTCCTAATCTTGGATGTTGTGAACAGAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: FLCPFICSWTLG*LPNLGCCEQSC Trigger: GCAGCTCTGTTCACAACATCCAAGATTAGGAAGCAACCCAAGTGTCCATGAACAGATGAATGGACAAAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000661173.1 ENST00000661286.1 ENST00000667082.1 |
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| CDS CAA 90 bp | TTTGTCCATTCATCTGTTCATGGACACTTGGGTTGCTTCCTAATCTaGGATGTTGTGAACAGAGCTGCAACAACCATGGAAATGCAGATA | + |
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Preference number: 6 (lower is better) Translates to: FVHSSVHGHLGCFLI*DVVNRAATTMEMQI Trigger: TATCTGCATTTCCATGGTTGTTGCAGCTCTGTTCACAACATCCAAGATTAGGAAGCAACCCAAGTGTCCATGAACAGATGAATGGACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000661173.1 ENST00000661286.1 ENST00000667082.1 |
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| CDS CAA 90 bp | GTACCACATTTTCTTTGTCCATTCATCTGTTCATGGACACTTGGGTaGCTTCCTAATCTTGGATGTTGTGAACAGAGCTGCAACAACCAT | + |
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Preference number: 6 (lower is better) Translates to: VPHFLCPFICSWTLG*LPNLGCCEQSCNNH Trigger: ATGGTTGTTGCAGCTCTGTTCACAACATCCAAGATTAGGAAGCAACCCAAGTGTCCATGAACAGATGAATGGACAAAGAAAATGTGGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661286.1 ENST00000667082.1 |
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| CDS TCA 72 bp | AGGAGGCAGCCAATATTGCACTTGAGATTATTTCTTTaGCTCATTTCTTGGGTCATTAGAAGTCTACCAGTT | + |
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Preference number: 6 (lower is better) Translates to: RRQPILHLRLFL*LISWVIRSLPV Trigger: AACTGGTAGACTTCTAATGACCCAAGAAATGAGTCAAAGAAATAATCTCAAGTGCAATATTGGCTGCCTCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667082.1 |
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| CDS CAA 72 bp | AACATAAATCATTTACAGTATCAAAGTCCTGCCATATaGATGAAGATTTTAGGAGTCCCATGGTTTGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: NINHLQYQSPAI*MKILGVPWFAA Trigger: TGCTGCAAACCATGGGACTCCTAAAATCTTCATCAATATGGCAGGACTTTGATACTGTAAATGATTTATGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667082.1 |
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| CDS GCA 72 bp | AAGGTGAAACATAAATCATTTACAGTATCAAAGTCCTaGCATATTGATGAAGATTTTAGGAGTCCCATGGTT | + |
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Preference number: 6 (lower is better) Translates to: KVKHKSFTVSKS*HIDEDFRSPMV Trigger: AACCATGGGACTCCTAAAATCTTCATCAATATGGCAGGACTTTGATACTGTAAATGATTTATGTTTCACCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667082.1 |
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