Pregenerated sensors for LINC00535 (Homo sapiens)
Ensembl gene IDs: ENSG00000246662Ensembl transcript IDs: ENST00000501400.1, ENST00000520096.5, ENST00000520513.1
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCCTTCGCCGGCAGGGACGCGCGGGACAACCGCGCAGGCGGCTCTaGAGGGGTGGGCGCGCCATCACCCCTCTCGGTCCCTGCCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: SLRRQGRAGQPRRRL*RGGRAITPLGPCLL Trigger: AAGCAGGCAGGGACCGAGAGGGGTGATGGCGCGCCCACCCCTGCAGAGCCGCCTGCGCGGTTGTCCCGCGCGTCCCTGCCGGCGAAGGCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 90 bp | GTAAGCGCGGCTGTTAGAGAGGATGGAGGCGCCGTAGCCCCGCGGTaGTTCTCACAGCCTTCGCCGGCAGGGACGCGCGGGACAACCGCG | + |
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Preference number: 5 (lower is better) Translates to: VSAAVREDGGAVAPR*FSQPSPAGTRGTTA Trigger: CGCGGTTGTCCCGCGCGTCCCTGCCGGCGAAGGCTGTGAGAAGCACCGCGGGGCTACGGCGCCTCCATCCTCTCTAACAGCCGCGCTTAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 90 bp | CAGCTCTTCCCTGGCTGTGGACCAGAGACCACCCAGACCATCTGTTaGCCAGAGTTCCTTGCCCACATGGGTCTCTCCATAGGGCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: QLFPGCGPETTQTIC*PEFLAHMGLSIGQL Trigger: CAGCTGCCCTATGGAGAGACCCATGTGGGCAAGGAACTCTGGCCAACAGATGGTCTGGGTGGTCTCTGGTCCACAGCCAGGGAAGAGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS TCA 90 bp | CTTCCAAGGGCAGCTCTCAAGAGCCCACGTTTTCAGATTCAGCAGTaGAGCGGACGCGTCTGGTACGAGACTACAAGTCGCACAGGCGGA | + |
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Preference number: 5 (lower is better) Translates to: LPRAALKSPRFQIQQ*SGRVWYETTSRTGG Trigger: TCCGCCTGTGCGACTTGTAGTCTCGTACCAGACGCGTCCGCTTCACTGCTGAATCTGAAAACGTGGGCTCTTGAGAGCTGCCCTTGGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 90 bp | GCTGGGACATGCTGCATGTTGCTCCACTCCTTTTCCCAGACCACCTaGAGTCCTCCGCAATCCAGCAATGAATGGGCTAGAACCTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: AGTCCMLLHSFSQTT*SPPQSSNEWARTWS Trigger: GGACCAGGTTCTAGCCCATTCATTGCTGGATTGCGGAGGACTCCAGGTGGTCTGGGAAAAGGAGTGGAGCAACATGCAGCATGTCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS TCA 90 bp | GATGATACAGCAAGAAGGCCCTCATCAGATGCCAGCACTTGCTCTTaGACTTCTCAGCCTTCAGAACCGACGCTCAGGCCCTTCAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: DDTARRPSSDASTCS*TSQPSEPTLRPFRS Trigger: GGACCTGAAGGGCCTGAGCGTCGGTTCTGAAGGCTGAGAAGTTCAAGAGCAAGTGCTGGCATCTGATGAGGGCCTTCTTGCTGTATCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 90 bp | TCAGCCTTCAGAACCGACGCTCAGGCCCTTCAGGTCCGGGACCCCTaGTTCTTAATTATGTTTCTATTACTCCCAGTGTCTAACACAATC | + |
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Preference number: 5 (lower is better) Translates to: SAFRTDAQALQVRDP*FLIMFLLLPVSNTI Trigger: GATTGTGTTAGACACTGGGAGTAATAGAAACATAATTAAGAAGCAGGGGTCCCGGACCTGAAGGGCCTGAGCGTCGGTTCTGAAGGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 90 bp | AGAATATGCCATCACCAACGTAGTACACTGTGGAGCCTCTCACAGTaGAGGTCTTATTGTGCCCTTAGTGGAAGGTGTGGAGCTGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: RICHHQRSTLWSLSQ*RSYCALSGRCGAVE Trigger: CTCTACAGCTCCACACCTTCCACTAAGGGCACAATAAGACCTCCACTGTGAGAGGCTCCACAGTGTACTACGTTGGTGATGGCATATTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 90 bp | AGGTCTTATTGTGCCCTTAGTGGAAGGTGTGGAGCTGTAGAGATGTaGGCAGGCACTCAATTAGAGTCCTTCCTGTTTCATTGGAAACTA | + |
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Preference number: 5 (lower is better) Translates to: RSYCALSGRCGAVEM*AGTQLESFLFHWKL Trigger: TAGTTTCCAATGAAACAGGAAGGACTCTAATTGAGTGCCTGCCCACATCTCTACAGCTCCACACCTTCCACTAAGGGCACAATAAGACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 90 bp | TTCTGGTCCTCGCTAGAGAGCCAAGTGGTCTGTGTTTTCTCATCTTaGTGTGTAAGACATCCCCATTACTCTTCATCTAAGAAGCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: FWSSLESQVVCVFSS*CVRHPHYSSSKKPS Trigger: TGAAGGCTTCTTAGATGAAGAGTAATGGGGATGTCTTACACAGCAAGATGAGAAAACACAGACCACTTGGCTCTCTAGCGAGGACCAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000520096.5 |
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| CDS GCA 90 bp | CACATCTGGATTTCTCAATATAATTTCCTATTCATGCATTCTACATaGCATCTTCCTCCTTTCTCATTATTGGGTGACTTTTCACTTGGC | + |
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Preference number: 5 (lower is better) Translates to: HIWISQYNFLFMHST*HLPPFSLLGDFSLG Trigger: GCCAAGTGAAAAGTCACCCAATAATGAGAAAGGAGGAAGATGGCATGTAGAATGCATGAATAGGAAATTATATTGAGAAATCCAGATGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 90 bp | TTGCACAACTGCACATCTGGATTTCTCAATATAATTTCCTATTCATaGATTCTACATGCCATCTTCCTCCTTTCTCATTATTGGGTGACT | + |
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Preference number: 5 (lower is better) Translates to: LHNCTSGFLNIISYS*ILHAIFLLSHYWVT Trigger: AGTCACCCAATAATGAGAAAGGAGGAAGATGGCATGTAGAATGCATGAATAGGAAATTATATTGAGAAATCCAGATGTGCAGTTGTGCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 72 bp | CGGCAGGGACGCGCGGGACAACCGCGCAGGCGGCTCTaGAGGGGTGGGCGCGCCATCACCCCTCTCGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: RQGRAGQPRRRL*RGGRAITPLGP Trigger: GGGACCGAGAGGGGTGATGGCGCGCCCACCCCTGCAGAGCCGCCTGCGCGGTTGTCCCGCGCGTCCCTGCCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | ACGCGCGGGACAACCGCGCAGGCGGCTCTGCAGGGGTaGGCGCGCCATCACCCCTCTCGGTCCCTGCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: TRGTTAQAALQG*ARHHPSRSLPA Trigger: AGCAGGCAGGGACCGAGAGGGGTGATGGCGCGCCCACCCCTGCAGAGCCGCCTGCGCGGTTGTCCCGCGCGT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 72 bp | GCTGTTAGAGAGGATGGAGGCGCCGTAGCCCCGCGGTaGTTCTCACAGCCTTCGCCGGCAGGGACGCGCGGG | + |
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Preference number: 6 (lower is better) Translates to: AVREDGGAVAPR*FSQPSPAGTRG Trigger: CCCGCGCGTCCCTGCCGGCGAAGGCTGTGAGAAGCACCGCGGGGCTACGGCGCCTCCATCCTCTCTAACAGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | GCCTCTGGTCAGAGGTGCTCAGCTCTTCCCTGGCTGTaGACCAGAGACCACCCAGACCATCTGTTGGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: ASGQRCSALPWL*TRDHPDHLLAR Trigger: TCTGGCCAACAGATGGTCTGGGTGGTCTCTGGTCCACAGCCAGGGAAGAGCTGAGCACCTCTGACCAGAGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CAA 72 bp | CCCTGGCTGTGGACCAGAGACCACCCAGACCATCTGTaGGCCAGAGTTCCTTGCCCACATGGGTCTCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: PWLWTRDHPDHL*ARVPCPHGSLH Trigger: ATGGAGAGACCCATGTGGGCAAGGAACTCTGGCCAACAGATGGTCTGGGTGGTCTCTGGTCCACAGCCAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CAA 90 bp | TCAGCTCTTCCCTGGCTGTGGACCAGAGACCACCCAGACCATCTGTaGGCCAGAGTTCCTTGCCCACATGGGTCTCTCCATAGGGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: SALPWLWTRDHPDHL*ARVPCPHGSLHRAA Trigger: AGCTGCCCTATGGAGAGACCCATGTGGGCAAGGAACTCTGGCCAACAGATGGTCTGGGTGGTCTCTGGTCCACAGCCAGGGAAGAGCTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | CCTGGCTGTGGACCAGAGACCACCCAGACCATCTGTTaGCCAGAGTTCCTTGCCCACATGGGTCTCTCCATA | + |
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Preference number: 6 (lower is better) Translates to: PGCGPETTQTIC*PEFLAHMGLSI Trigger: TATGGAGAGACCCATGTGGGCAAGGAACTCTGGCCAACAGATGGTCTGGGTGGTCTCTGGTCCACAGCCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | CAGACCACCTGGAGTCCTCCGCAATCCAGCAATGAATaGGCTAGAACCTGGTCCTCTGGCACCCTGCATAGG | + |
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Preference number: 6 (lower is better) Translates to: QTTWSPPQSSNE*ARTWSSGTLHR Trigger: CCTATGCAGGGTGCCAGAGGACCAGGTTCTAGCCCATTCATTGCTGGATTGCGGAGGACTCCAGGTGGTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS TCA 72 bp | GCAAGAAGGCCCTCATCAGATGCCAGCACTTGCTCTTaGACTTCTCAGCCTTCAGAACCGACGCTCAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: ARRPSSDASTCS*TSQPSEPTLRP Trigger: GGGCCTGAGCGTCGGTTCTGAAGGCTGAGAAGTTCAAGAGCAAGTGCTGGCATCTGATGAGGGCCTTCTTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS TCA 72 bp | GCAGCTCTCAAGAGCCCACGTTTTCAGATTCAGCAGTaGAGCGGACGCGTCTGGTACGAGACTACAAGTCGC | + |
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Preference number: 6 (lower is better) Translates to: AALKSPRFQIQQ*SGRVWYETTSR Trigger: GCGACTTGTAGTCTCGTACCAGACGCGTCCGCTTCACTGCTGAATCTGAAAACGTGGGCTCTTGAGAGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | AGTCCTCCGCAATCCAGCAATGAATGGGCTAGAACCTaGTCCTCTGGCACCCTGCATAGGGAGATGGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: SPPQSSNEWART*SSGTLHREMAD Trigger: ATCAGCCATCTCCCTATGCAGGGTGCCAGAGGACCAGGTTCTAGCCCATTCATTGCTGGATTGCGGAGGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 72 bp | CATCTTTGCGAAGCTTTGCTGGGACATGCTGCATGTTaGTCCACTCCTTTTCCCAGACCACCTGGAGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: HLCEALLGHAAC*STPFPRPPGVL Trigger: GAGGACTCCAGGTGGTCTGGGAAAAGGAGTGGAGCAACATGCAGCATGTCCCAGCAAAGCTTCGCAAAGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | TGTCTTGCTGGCAGGATTCAGTTTGTCATAAGCCTCTaGTCAGAGGTGCTCAGCTCTTCCCTGGCTGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: CLAGRIQFVISL*SEVLSSSLAVD Trigger: GTCCACAGCCAGGGAAGAGCTGAGCACCTCTGACCAGAGGCTTATGACAAACTGAATCCTGCCAGCAAGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | CTAGAACCTGGTCCTCTGGCACCCTGCATAGGGAGATaGCTGATACTTCTGGATTGGTTGGTGTCTTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: LEPGPLAPCIGR*LILLDWLVSCW Trigger: CCAGCAAGACACCAACCAATCCAGAAGTATCAGCCATCTCCCTATGCAGGGTGCCAGAGGACCAGGTTCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | TGCTGCATGTTGCTCCACTCCTTTTCCCAGACCACCTaGAGTCCTCCGCAATCCAGCAATGAATGGGCTAGA | + |
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Preference number: 6 (lower is better) Translates to: CCMLLHSFSQTT*SPPQSSNEWAR Trigger: TCTAGCCCATTCATTGCTGGATTGCGGAGGACTCCAGGTGGTCTGGGAAAAGGAGTGGAGCAACATGCAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 72 bp | GCAATGAATGGGCTAGAACCTGGTCCTCTGGCACCCTaGATAGGGAGATGGCTGATACTTCTGGATTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: AMNGLEPGPLAP*IGRWLILLDWL Trigger: CAACCAATCCAGAAGTATCAGCCATCTCCCTATGCAGGGTGCCAGAGGACCAGGTTCTAGCCCATTCATTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | GCCCACATGGGTCTCTCCATAGGGCAGCTGACAACATaGCATCCGGCACCTAGTTGTCTTCAGAATATCCAT | + |
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Preference number: 6 (lower is better) Translates to: AHMGLSIGQLTT*HPAPSCLQNIH Trigger: ATGGATATTCTGAAGACAACTAGGTGCCGGATGCCATGTTGTCAGCTGCCCTATGGAGAGACCCATGTGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 72 bp | AGAACCGACGCTCAGGCCCTTCAGGTCCGGGACCCCTaGTTCTTAATTATGTTTCTATTACTCCCAGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: RTDAQALQVRDP*FLIMFLLLPVS Trigger: AGACACTGGGAGTAATAGAAACATAATTAAGAAGCAGGGGTCCCGGACCTGAAGGGCCTGAGCGTCGGTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 72 bp | ATACTGACATCTTTGCGAAGCTTTGCTGGGACATGCTaGATGTTGCTCCACTCCTTTTCCCAGACCACCTGG | + |
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Preference number: 6 (lower is better) Translates to: ILTSLRSFAGTC*MLLHSFSQTTW Trigger: CCAGGTGGTCTGGGAAAAGGAGTGGAGCAACATGCAGCATGTCCCAGCAAAGCTTCGCAAAGATGTCAGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | CATCACCAACGTAGTACACTGTGGAGCCTCTCACAGTaGAGGTCTTATTGTGCCCTTAGTGGAAGGTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: HHQRSTLWSLSQ*RSYCALSGRCG Trigger: TCCACACCTTCCACTAAGGGCACAATAAGACCTCCACTGTGAGAGGCTCCACAGTGTACTACGTTGGTGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | CCCCTCAGAATATGCCATCACCAACGTAGTACACTGTaGAGCCTCTCACAGTGGAGGTCTTATTGTGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: PLRICHHQRSTL*SLSQWRSYCAL Trigger: AAGGGCACAATAAGACCTCCACTGTGAGAGGCTCCACAGTGTACTACGTTGGTGATGGCATATTCTGAGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | GCACCCTGCATAGGGAGATGGCTGATACTTCTGGATTaGTTGGTGTCTTGCTGGCAGGATTCAGTTTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: APCIGRWLILLD*LVSCWQDSVCH Trigger: ATGACAAACTGAATCCTGCCAGCAAGACACCAACCAATCCAGAAGTATCAGCCATCTCCCTATGCAGGGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CAA 72 bp | CAGGCACCAGGGTGCGCAGGATTCACTTGTTTAATGTaGGAAGAGATTGTAGAGTCAAAAGCCCCCAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: QAPGCAGFTCLM*EEIVESKAPRQ Trigger: TTGCCTGGGGGCTTTTGACTCTACAATCTCTTCCAACATTAAACAAGTGAATCCTGCGCACCCTGGTGCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000520513.1 |
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| CDS CAA 90 bp | TGTAGAGATGTGGGCAGGCACTCAATTAGAGTCCTTCCTGTTTCATaGGAAACTACACATGGAAAGAGCCACATAGAGCATCCTGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: CRDVGRHSIRVLPVS*ETTHGKSHIEHPAR Trigger: TCTGGCAGGATGCTCTATGTGGCTCTTTCCATGTGTAGTTTCCAATGAAACAGGAAGGACTCTAATTGAGTGCCTGCCCACATCTCTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CCA 72 bp | AGATGGCTGATACTTCTGGATTGGTTGGTGTCTTGCTaGCAGGATTCAGTTTGTCATAAGCCTCTGGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: RWLILLDWLVSC*QDSVCHKPLVR Trigger: TCTGACCAGAGGCTTATGACAAACTGAATCCTGCCAGCAAGACACCAACCAATCCAGAAGTATCAGCCATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS TCA 72 bp | GCAATTGTGGGCTGTTGCTTTCTCCCTGGAGGATGGTaGCAATTAATACTGACATCTTTGCGAAGCTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: AIVGCCFLPGGW*QLILTSLRSFA Trigger: AGCAAAGCTTCGCAAAGATGTCAGTATTAATTGTCACCATCCTCCAGGGAGAAAGCAACAGCCCACAATTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000501400.1 ENST00000520096.5 |
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| CDS TCA 72 bp | ATTAAGGGAGGCCCAGGATTAAGACATCATGGAGACTaGATTATCTCACACCAGCAGGAAGGAGTCGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: IKGGPGLRHHGD*IISHQQEGVVS Trigger: AGAAACGACTCCTTCCTGCTGGTGTGAGATAATTCAGTCTCCATGATGTCTTAATCCTGGGCCTCCCTTAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000501400.1 ENST00000520096.5 |
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| CDS CCA 72 bp | GTGACAATTAATACTGACATCTTTGCGAAGCTTTGCTaGGACATGCTGCATGTTGCTCCACTCCTTTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: VTINTDIFAKLC*DMLHVAPLLFP Trigger: TGGGAAAAGGAGTGGAGCAACATGCAGCATGTCCCAGCAAAGCTTCGCAAAGATGTCAGTATTAATTGTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CAA 72 bp | GTGGGCAGGCACTCAATTAGAGTCCTTCCTGTTTCATaGGAAACTACACATGGAAAGAGCCACATAGAGCAT | + |
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Preference number: 6 (lower is better) Translates to: VGRHSIRVLPVS*ETTHGKSHIEH Trigger: ATGCTCTATGTGGCTCTTTCCATGTGTAGTTTCCAATGAAACAGGAAGGACTCTAATTGAGTGCCTGCCCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS GCA 72 bp | TCGCTAGAGAGCCAAGTGGTCTGTGTTTTCTCATCTTaGTGTGTAAGACATCCCCATTACTCTTCATCTAAG | + |
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Preference number: 6 (lower is better) Translates to: SLESQVVCVFSS*CVRHPHYSSSK Trigger: CTTAGATGAAGAGTAATGGGGATGTCTTACACAGCAAGATGAGAAAACACAGACCACTTGGCTCTCTAGCGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000520096.5 |
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| CDS CAA 90 bp | TCGTTTCTTCAGTTCAGGTTCATGGTCTTTGGAGCAGAAGTGGTTTaGAAGAGGAAAGAAAATGCAGGCAATTGTGGGCTGTTGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SFLQFRFMVFGAEVV*KRKENAGNCGLLLS Trigger: AGAAAGCAACAGCCCACAATTGCCTGCATTTTCTTTCCTCTTCAAAACCACTTCTGCTCCAAAGACCATGAACCTGAACTGAAGAAACGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000501400.1 ENST00000520096.5 |
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| CDS CCA 72 bp | GAAGGAGTCGTTTCTTCAGTTCAGGTTCATGGTCTTTaGAGCAGAAGTGGTTTTGAAGAGGAAAGAAAATGC | + |
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Preference number: 6 (lower is better) Translates to: EGVVSSVQVHGL*SRSGFEEERKC Trigger: GCATTTTCTTTCCTCTTCAAAACCACTTCTGCTCCAAAGACCATGAACCTGAACTGAAGAAACGACTCCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000501400.1 ENST00000520096.5 |
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| CDS CAA 72 bp | TGTCTTCAGAATATCCATTCAAAAATCCACACCAGCTaGCTCTTGCACAACTGCACATCTGGATTTCTCAAT | + |
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Preference number: 6 (lower is better) Translates to: CLQNIHSKIHTS*LLHNCTSGFLN Trigger: ATTGAGAAATCCAGATGTGCAGTTGTGCAAGAGCAAGCTGGTGTGGATTTTTGAATGGATATTCTGAAGACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CAA 72 bp | CAGAATATCCATTCAAAAATCCACACCAGCTTGCTCTaGCACAACTGCACATCTGGATTTCTCAATATAATT | + |
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Preference number: 6 (lower is better) Translates to: QNIHSKIHTSLL*HNCTSGFLNII Trigger: AATTATATTGAGAAATCCAGATGTGCAGTTGTGCAAGAGCAAGCTGGTGTGGATTTTTGAATGGATATTCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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| CDS CAA 90 bp | AGTTGTCTTCAGAATATCCATTCAAAAATCCACACCAGCTTGCTCTaGCACAACTGCACATCTGGATTTCTCAATATAATTTCCTATTCA | + |
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Preference number: 6 (lower is better) Translates to: SCLQNIHSKIHTSLL*HNCTSGFLNIISYS Trigger: TGAATAGGAAATTATATTGAGAAATCCAGATGTGCAGTTGTGCAAGAGCAAGCTGGTGTGGATTTTTGAATGGATATTCTGAAGACAACT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000501400.1 |
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