Pregenerated sensors for LINC00492 (Homo sapiens)
Ensembl gene IDs: ENSG00000250958Ensembl transcript IDs: ENST00000504436.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AACTTACGTAGGGTGGGCATATCTGCATCCACAATCAAGCAAGCCTaGTCGGTTACAACACAAAATGGTGCCTATTGGCTCATTGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: NLRRVGISASTIKQA*SVTTQNGAYWLIVS Trigger: AGAAACAATGAGCCAATAGGCACCATTTTGTGTTGTAACCGAGCAGGCTTGCTTGATTGTGGATGCAGATATGCCCACCCTACGTAAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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| CDS CCA 90 bp | CCACACATTTCTTCTAGTCTGTACAAAATGTCAACTTACGTAGGGTaGGCATATCTGCATCCACAATCAAGCAAGCCTGCTCGGTTACAA | + |
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Preference number: 5 (lower is better) Translates to: PHISSSLYKMSTYVG*AYLHPQSSKPARLQ Trigger: TTGTAACCGAGCAGGCTTGCTTGATTGTGGATGCAGATATGCCCACCCTACGTAAGTTGACATTTTGTACAGACTAGAAGAAATGTGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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| CDS TCA 90 bp | CACTTTATTGCATTAGCAGCTAAACCCTGTGATGCCTTTGGAATATaGTACTGTAGAACCGTCTTTAGCTTCTCAGCTCTGGGGAGTTGT | + |
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Preference number: 5 (lower is better) Translates to: HFIALAAKPCDAFGI*YCRTVFSFSALGSC Trigger: ACAACTCCCCAGAGCTGAGAAGCTAAAGACGGTTCTACAGTATCATATTCCAAAGGCATCACAGGGTTTAGCTGCTAATGCAATAAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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| CDS CCA 90 bp | CCTTTGGAATATGATACTGTAGAACCGTCTTTAGCTTCTCAGCTCTaGGGAGTTGTAGAACATGTTGAAATCAGAACTTATTTGTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: PLEYDTVEPSLASQL*GVVEHVEIRTYLWF Trigger: GAACCACAAATAAGTTCTGATTTCAACATGTTCTACAACTCCCCAGAGCTGAGAAGCTAAAGACGGTTCTACAGTATCATATTCCAAAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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| CDS GCA 90 bp | ATTGGCTCATTGTTTCTAGATGACAATGTTATTCATGATGTTGCGTaGTTCCAAGACAAAAACCACTTTATTGCATTAGCAGCTAAACCC | + |
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Preference number: 5 (lower is better) Translates to: IGSLFLDDNVIHDVA*FQDKNHFIALAAKP Trigger: GGGTTTAGCTGCTAATGCAATAAAGTGGTTTTTGTCTTGGAAGCACGCAACATCATGAATAACATTGTCATCTAGAAACAATGAGCCAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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| CDS GCA 72 bp | AGGGTGGGCATATCTGCATCCACAATCAAGCAAGCCTaGTCGGTTACAACACAAAATGGTGCCTATTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: RVGISASTIKQA*SVTTQNGAYWL Trigger: GAGCCAATAGGCACCATTTTGTGTTGTAACCGAGCAGGCTTGCTTGATTGTGGATGCAGATATGCCCACCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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| CDS TCA 72 bp | GCATTAGCAGCTAAACCCTGTGATGCCTTTGGAATATaGTACTGTAGAACCGTCTTTAGCTTCTCAGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: ALAAKPCDAFGI*YCRTVFSFSAL Trigger: CAGAGCTGAGAAGCTAAAGACGGTTCTACAGTATCATATTCCAAAGGCATCACAGGGTTTAGCTGCTAATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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| CDS CCA 72 bp | TCTTCTAGTCTGTACAAAATGTCAACTTACGTAGGGTaGGCATATCTGCATCCACAATCAAGCAAGCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: SSSLYKMSTYVG*AYLHPQSSKPA Trigger: AGCAGGCTTGCTTGATTGTGGATGCAGATATGCCCACCCTACGTAAGTTGACATTTTGTACAGACTAGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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| CDS CAA 90 bp | GTCATTCACTTTAGGCACAGCCTTGTGTTATATGTTAGGAAAATCTaGACCTTGGATGGAAGAGAGAAAAGGAACTCCAGAATGACAGCC | + |
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Preference number: 6 (lower is better) Translates to: VIHFRHSLVLYVRKI*TLDGREKRNSRMTA Trigger: GGCTGTCATTCTGGAGTTCCTTTTCTCTCTTCCATCCAAGGTCAAGATTTTCCTAACATATAACACAAGGCTGTGCCTAAAGTGAATGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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| CDS CCA 72 bp | TATGATACTGTAGAACCGTCTTTAGCTTCTCAGCTCTaGGGAGTTGTAGAACATGTTGAAATCAGAACTTAT | + |
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Preference number: 6 (lower is better) Translates to: YDTVEPSLASQL*GVVEHVEIRTY Trigger: ATAAGTTCTGATTTCAACATGTTCTACAACTCCCCAGAGCTGAGAAGCTAAAGACGGTTCTACAGTATCATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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| CDS GCA 72 bp | TTGTTTCTAGATGACAATGTTATTCATGATGTTGCGTaGTTCCAAGACAAAAACCACTTTATTGCATTAGCA | + |
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Preference number: 6 (lower is better) Translates to: LFLDDNVIHDVA*FQDKNHFIALA Trigger: TGCTAATGCAATAAAGTGGTTTTTGTCTTGGAAGCACGCAACATCATGAATAACATTGTCATCTAGAAACAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504436.1 |
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