Pregenerated sensors for LINC00475 (Homo sapiens)
Ensembl gene IDs: ENSG00000225511Ensembl transcript IDs: ENST00000416438.6, ENST00000434944.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGACGTCCTTCCAGAGAGTACAGCATGGAGAGGGGGACTTCACAGTaGGGAGACCTCAGCCAGCCGACTACAGCCACCACTGTCAGTGAA | + |
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Preference number: 5 (lower is better) Translates to: RRPSREYSMERGTSQ*GDLSQPTTATTVSE Trigger: TTCACTGACAGTGGTGGCTGTAGTCGGCTGGCTGAGGTCTCCCCACTGTGAAGTCCCCCTCTCCATGCTGTACTCTCTGGAAGGACGTCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000416438.6 ENST00000434944.1 |
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| CDS TCA 90 bp | TGGGAACCCACCACGGGAGCTCACCAAGGCCAACCTCGAAGAAGCTaGGCAGGAAAAGAAGCAAAGTCACACTGGAGTCCAGCCCGAGCA | + |
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Preference number: 5 (lower is better) Translates to: WEPTTGAHQGQPRRS*AGKEAKSHWSPARA Trigger: TGCTCGGGCTGGACTCCAGTGTGACTTTGCTTCTTTTCCTGCTCAGCTTCTTCGAGGTTGGCCTTGGTGAGCTCCCGTGGTGGGTTCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416438.6 |
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| CDS TCA 90 bp | TTAGGGCTCTTCAAACCATCAAGGTCATCAACGGCAAGGGCCGTCTaGGACCCTGTCACAGCCAAGAGGAGTCCAAGGAGATATGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LGLFKPSRSSTARAV*DPVTAKRSPRRYGS Trigger: GCTGCCATATCTCCTTGGACTCCTCTTGGCTGTGACAGGGTCTCAGACGGCCCTTGCCGTTGATGACCTTGATGGTTTGAAGAGCCCTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416438.6 ENST00000434944.1 |
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| CDS CCA 90 bp | AGATCGGGAGAGACAGCCCTCCCTGAATATTCTTGTCATTTACGATaGCATGTGTATTCCCGTTGCAATGCTCTCTTCCCAAATAAGCAT | + |
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Preference number: 5 (lower is better) Translates to: RSGETALPEYSCHLR*HVYSRCNALFPNKH Trigger: ATGCTTATTTGGGAAGAGAGCATTGCAACGGGAATACACATGCCATCGTAAATGACAAGAATATTCAGGGAGGGCTGTCTCTCCCGATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434944.1 |
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| CDS CCA 90 bp | GCCAAATGTGATGGGGTCCTCCCTGAATATTCTTGTCATTTACGATaGCATGTGTATTCCCGTTGCAATGCTCTCTTCCCAAATAAGCAT | + |
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Preference number: 5 (lower is better) Translates to: AKCDGVLPEYSCHLR*HVYSRCNALFPNKH Trigger: ATGCTTATTTGGGAAGAGAGCATTGCAACGGGAATACACATGCCATCGTAAATGACAAGAATATTCAGGGAGGACCCCATCACATTTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416438.6 |
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| CDS GCA 90 bp | CTCCCTGAATATTCTTGTCATTTACGATGGCATGTGTATTCCCGTTaGAATGCTCTCTTCCCAAATAAGCATCCATTTCATTTCAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: LPEYSCHLRWHVYSR*NALFPNKHPFHFRE Trigger: CTCTCTGAAATGAAATGGATGCTTATTTGGGAAGAGAGCATTGCAACGGGAATACACATGCCATCGTAAATGACAAGAATATTCAGGGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416438.6 ENST00000434944.1 |
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| CDS CCA 72 bp | GCTGTGCATGGCGACGTCCTTCCAGAGAGTACAGCATaGAGAGGGGGACTTCACAGTGGGGAGACCTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: AVHGDVLPESTA*RGGLHSGETSA Trigger: GGCTGAGGTCTCCCCACTGTGAAGTCCCCCTCTCCATGCTGTACTCTCTGGAAGGACGTCGCCATGCACAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000416438.6 ENST00000434944.1 |
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| CDS CCA 72 bp | GGAGCACAACCCATACCCCTAAGTGTCGGCTGTGCATaGCGACGTCCTTCCAGAGAGTACAGCATGGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: GAQPIPLSVGCA*RRPSREYSMER Trigger: CCTCTCCATGCTGTACTCTCTGGAAGGACGTCGCCATGCACAGCCGACACTTAGGGGTATGGGTTGTGCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000416438.6 ENST00000434944.1 |
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| CDS CAA 72 bp | CACCTCACTAGCAATGAACACACCAGTGCCCAGATCTaGGTTTCTAACACTGTTCTAGGAAAGGAGCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: HLTSNEHTSAQI*VSNTVLGKEPE Trigger: CTCTGGCTCCTTTCCTAGAACAGTGTTAGAAACCAAGATCTGGGCACTGGTGTGTTCATTGCTAGTGAGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416438.6 |
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| CDS CCA 72 bp | GATGGGGTCCTCCCTGAATATTCTTGTCATTTACGATaGCATGTGTATTCCCGTTGCAATGCTCTCTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: DGVLPEYSCHLR*HVYSRCNALFP Trigger: TGGGAAGAGAGCATTGCAACGGGAATACACATGCCATCGTAAATGACAAGAATATTCAGGGAGGACCCCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416438.6 |
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| CDS CCA 72 bp | GAGACAGCCCTCCCTGAATATTCTTGTCATTTACGATaGCATGTGTATTCCCGTTGCAATGCTCTCTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: ETALPEYSCHLR*HVYSRCNALFP Trigger: TGGGAAGAGAGCATTGCAACGGGAATACACATGCCATCGTAAATGACAAGAATATTCAGGGAGGGCTGTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434944.1 |
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| CDS TCA 72 bp | CACTGGAGTCCAGCCCGAGCATGGGCTGAGTATCCATaGGTCCATAGCAATATAAATAAAAGATTGAGTACA | + |
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Preference number: 6 (lower is better) Translates to: HWSPARAWAEYP*VHSNINKRLST Trigger: TGTACTCAATCTTTTATTTATATTGCTATGGACTCATGGATACTCAGCCCATGCTCGGGCTGGACTCCAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416438.6 |
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| CDS CAA 72 bp | GAATGCATTTATGTTCTAAATGGCTTAAACATTCCCTaGCTCTATCAGCTGAGAGAGTCTAGAAGCAACAAC | + |
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Preference number: 6 (lower is better) Translates to: ECIYVLNGLNIP*LYQLRESRSNN Trigger: GTTGTTGCTTCTAGACTCTCTCAGCTGATAGAGCAAGGGAATGTTTAAGCCATTTAGAACATAAATGCATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416438.6 |
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