Pregenerated sensors for LINC00457 (Homo sapiens)
Ensembl gene IDs: ENSG00000225179Ensembl transcript IDs: ENST00000428706.1, ENST00000440160.1, ENST00000660916.1, ENST00000664114.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAAGGGTCCTGGGGTGAGCACTTTCCAGACCTCTCAGGCTGTTCTTaGTGGGCGCTTGCAGAGATCATGACTCATTCTTCCACTGTCATC | + |
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Preference number: 5 (lower is better) Translates to: EGSWGEHFPDLSGCS*WALAEIMTHSSTVI Trigger: GATGACAGTGGAAGAATGAGTCATGATCTCTGCAAGCGCCCATCAAGAACAGCCTGAGAGGTCTGGAAAGTGCTCACCCCAGGACCCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440160.1 |
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| CDS TCA 90 bp | CTCACTGTGTTGAGGAAGCAGAAGCAGAATGGACTTGAGCTTGGGTaGTGTCAGCTCCATCCTGCAGCTGAACTTCAAGGCCAGGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: LTVLRKQKQNGLELG*CQLHPAAELQGQGH Trigger: GTGACCCTGGCCTTGAAGTTCAGCTGCAGGATGGAGCTGACATCACCCAAGCTCAAGTCCATTCTGCTTCTGCTTCCTCAACACAGTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660916.1 ENST00000664114.1 |
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| CDS TCA 90 bp | CCACCACATCTCCTCACAGTATGGGAAAGTCGCTTAATGCAATCCTaGGCTTCCAGACTCCTCTGCGTCATTCTGCTCCCCCTGATTGCA | + |
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Preference number: 5 (lower is better) Translates to: PPHLLTVWESRLMQS*ASRLLCVILLPLIA Trigger: TGCAATCAGGGGGAGCAGAATGACGCAGAGGAGTCTGGAAGCTCAGGATTGCATTAAGCGACTTTCCCATACTGTGAGGAGATGTGGTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000440160.1 ENST00000660916.1 |
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| CDS TCA 90 bp | TTCCAGACCTCTCAGGCTGTTCTTGATGGGCGCTTGCAGAGATCATaGCTCATTCTTCCACTGTCATCCTGCAAGTGGGCTGTGTGTGAC | + |
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Preference number: 5 (lower is better) Translates to: FQTSQAVLDGRLQRS*LILPLSSCKWAVCD Trigger: GTCACACACAGCCCACTTGCAGGATGACAGTGGAAGAATGAGTCATGATCTCTGCAAGCGCCCATCAAGAACAGCCTGAGAGGTCTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440160.1 |
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| CDS TCA 90 bp | TTCCCTGCTGTCAAAGTGGTAGGAACAGTGGCCACCTCACTGTGTTaGGGAAGCAGAAGCAGAATGGACTTGAGCTTGGGTGATGTCAGC | + |
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Preference number: 5 (lower is better) Translates to: FPAVKVVGTVATSLC*GSRSRMDLSLGDVS Trigger: GCTGACATCACCCAAGCTCAAGTCCATTCTGCTTCTGCTTCCTCAACACAGTGAGGTGGCCACTGTTCCTACCACTTTGACAGCAGGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660916.1 ENST00000664114.1 |
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| CDS TCA 90 bp | CAAGGCCAGGGTCACTGGATCCCAAATAATTTAGTCTTCAGCAGCTaGAGCACGTCACCTCCAACAATACCACAGAACCAAATTCCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: QGQGHWIPNNLVFSS*STSPPTIPQNQIPC Trigger: ACAGGGAATTTGGTTCTGTGGTATTGTTGGAGGTGACGTGCTTCAGCTGCTGAAGACTAAATTATTTGGGATCCAGTGACCCTGGCCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660916.1 ENST00000664114.1 |
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| CDS CCA 90 bp | AATCATGCAGGCACCCCAGAAACTCATGTGCTTTATAACAAGGTTTaGATGGTATTCTCCAGCATTAAGGAACTCTCTTCTTCTGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: NHAGTPETHVLYNKV*MVFSSIKELSSSGF Trigger: GAAGCCAGAAGAAGAGAGTTCCTTAATGCTGGAGAATACCATCCAAACCTTGTTATAAAGCACATGAGTTTCTGGGGTGCCTGCATGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000660916.1 ENST00000664114.1 |
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| CDS TCA 90 bp | ACACCTGTTTCTTATTTCTCCCAAGTGGCTCTGATATCTAGCTCTTaGTATAATGCATCCTTAAAAGGAATCCTTCCAACAGTTAATGGT | + |
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Preference number: 5 (lower is better) Translates to: TPVSYFSQVALISSS*YNASLKGILPTVNG Trigger: ACCATTAACTGTTGGAAGGATTCCTTTTAAGGATGCATTATATCAAGAGCTAGATATCAGAGCCACTTGGGAGAAATAAGAAACAGGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000440160.1 ENST00000660916.1 ENST00000664114.1 |
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| CDS GCA 72 bp | AAGTCTTTGAAGCCCTTGGACACCTCTTCTGCGCCCTaGAATCACCTTCGAGGGCTCTGCTCTCACCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: KSLKPLDTSSAP*NHLRGLCSHPL Trigger: AAGAGGGTGAGAGCAGAGCCCTCGAAGGTGATTGCAGGGCGCAGAAGAGGTGTCCAAGGGCTTCAAAGACTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660916.1 |
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| CDS GCA 72 bp | TTAAGGGAAGTCTTTGAAGCCCTTGGACACCTCTTCTaGGCCCTGCAATCACCTTCGAGGGCTCTGCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LREVFEALGHLF*ALQSPSRALLS Trigger: TGAGAGCAGAGCCCTCGAAGGTGATTGCAGGGCGCAGAAGAGGTGTCCAAGGGCTTCAAAGACTTCCCTTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660916.1 |
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| CDS TCA 72 bp | CTCCTCACAGTATGGGAAAGTCGCTTAATGCAATCCTaGGCTTCCAGACTCCTCTGCGTCATTCTGCTCCCC | + |
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Preference number: 6 (lower is better) Translates to: LLTVWESRLMQS*ASRLLCVILLP Trigger: GGGGAGCAGAATGACGCAGAGGAGTCTGGAAGCTCAGGATTGCATTAAGCGACTTTCCCATACTGTGAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000440160.1 ENST00000660916.1 |
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| CDS TCA 72 bp | TGGGGTGAGCACTTTCCAGACCTCTCAGGCTGTTCTTaGTGGGCGCTTGCAGAGATCATGACTCATTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: WGEHFPDLSGCS*WALAEIMTHSS Trigger: GGAAGAATGAGTCATGATCTCTGCAAGCGCCCATCAAGAACAGCCTGAGAGGTCTGGAAAGTGCTCACCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440160.1 |
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| CDS TCA 72 bp | TCTCAGGCTGTTCTTGATGGGCGCTTGCAGAGATCATaGCTCATTCTTCCACTGTCATCCTGCAAGTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: SQAVLDGRLQRS*LILPLSSCKWA Trigger: AGCCCACTTGCAGGATGACAGTGGAAGAATGAGTCATGATCTCTGCAAGCGCCCATCAAGAACAGCCTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440160.1 |
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| CDS TCA 72 bp | TTGAGGAAGCAGAAGCAGAATGGACTTGAGCTTGGGTaGTGTCAGCTCCATCCTGCAGCTGAACTTCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LRKQKQNGLELG*CQLHPAAELQG Trigger: GCCTTGAAGTTCAGCTGCAGGATGGAGCTGACATCACCCAAGCTCAAGTCCATTCTGCTTCTGCTTCCTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660916.1 ENST00000664114.1 |
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| CDS CAA 72 bp | TGTCAAAGTGGTAGGAACAGTGGCCACCTCACTGTGTaGAGGAAGCAGAAGCAGAATGGACTTGAGCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: CQSGRNSGHLTV*RKQKQNGLELG Trigger: CCCAAGCTCAAGTCCATTCTGCTTCTGCTTCCTCAACACAGTGAGGTGGCCACTGTTCCTACCACTTTGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660916.1 ENST00000664114.1 |
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| CDS GCA 72 bp | CTTTCCAGACCTCTCAGGCTGTTCTTGATGGGCGCTTaGAGAGATCATGACTCATTCTTCCACTGTCATCCT | + |
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Preference number: 6 (lower is better) Translates to: LSRPLRLFLMGA*RDHDSFFHCHP Trigger: AGGATGACAGTGGAAGAATGAGTCATGATCTCTGCAAGCGCCCATCAAGAACAGCCTGAGAGGTCTGGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440160.1 |
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| CDS TCA 72 bp | GGTCACTGGATCCCAAATAATTTAGTCTTCAGCAGCTaGAGCACGTCACCTCCAACAATACCACAGAACCAA | + |
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Preference number: 6 (lower is better) Translates to: GHWIPNNLVFSS*STSPPTIPQNQ Trigger: TTGGTTCTGTGGTATTGTTGGAGGTGACGTGCTTCAGCTGCTGAAGACTAAATTATTTGGGATCCAGTGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660916.1 ENST00000664114.1 |
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| CDS GCA 72 bp | AGCAACCCAGAATCCAGACTCTTTCTCCACAGCTCATaGCAATCTGCGACTGTTTCTACACCTGTTTCTTAT | + |
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Preference number: 6 (lower is better) Translates to: SNPESRLFLHSS*QSATVSTPVSY Trigger: ATAAGAAACAGGTGTAGAAACAGTCGCAGATTGGCATGAGCTGTGGAGAAAGAGTCTGGATTCTGGGTTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440160.1 |
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| CDS CAA 72 bp | CACATCTCCTCACACTTCATCAGAACACAGATCACATaGCGGATGAATCATCTTCATATACCAAGCCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: HISSHFIRTQIT*RMNHLHIPSLP Trigger: AGGCAGGCTTGGTATATGAAGATGATTCATCCGCAATGTGATCTGTGTTCTGATGAAGTGTGAGGAGATGTG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664114.1 |
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| CDS TCA 72 bp | TCTTATTTCTCCCAAGTGGCTCTGATATCTAGCTCTTaGTATAATGCATCCTTAAAAGGAATCCTTCCAACA | + |
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Preference number: 6 (lower is better) Translates to: SYFSQVALISSS*YNASLKGILPT Trigger: TGTTGGAAGGATTCCTTTTAAGGATGCATTATATCAAGAGCTAGATATCAGAGCCACTTGGGAGAAATAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000440160.1 ENST00000660916.1 ENST00000664114.1 |
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| CDS CAA 72 bp | GGTGCCAATCTTCTTCATATCATTTGCATGAACATGTaGTCTACCAATCCTGTTTCTACACCTGTTTCTTAT | + |
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Preference number: 6 (lower is better) Translates to: GANLLHIICMNM*STNPVSTPVSY Trigger: ATAAGAAACAGGTGTAGAAACAGGATTGGTAGACAACATGTTCATGCAAATGATATGAAGAAGATTGGCACC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428706.1 |
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