Pregenerated sensors for LINC00440 (Homo sapiens)
Ensembl gene IDs: ENSG00000234660Ensembl transcript IDs: ENST00000446579.1, ENST00000653072.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGACTCAGGCCAGGCTGCTCCGGTCCATCAAGTTCTTCCGCCATTTaGATTCCAAGCCCAGGCACCTTCATTCCTAGGTGTCTTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: GLRPGCSGPSSSSAI*IPSPGTFIPRCLSL Trigger: CAGAGAAAGACACCTAGGAATGAAGGTGCCTGGGCTTGGAATGCAAATGGCGGAAGAACTTGATGGACCGGAGCAGCCTGGCCTGAGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653072.1 |
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| CDS GCA 90 bp | ATGGCAGTGTCCAAGGGGAATGGCAGAAAAGGACTCAGGCCAGGCTaGTCCGGTCCATCAAGTTCTTCCGCCATTTGCATTCCAAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: MAVSKGNGRKGLRPG*SGPSSSSAICIPSP Trigger: TGGGCTTGGAATGCAAATGGCGGAAGAACTTGATGGACCGGAGCAGCCTGGCCTGAGTCCTTTTCTGCCATTCCCCTTGGACACTGCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653072.1 |
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| CDS TCA 90 bp | TTTGCATTCCAAGCCCAGGCACCTTCATTCCTAGGTGTCTTTCTCTaGGGCTTTAGGTGGAGGCCTTCTTCAAGCACCTCTGCTAAGCCT | + |
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Preference number: 5 (lower is better) Translates to: FAFQAQAPSFLGVFL*GFRWRPSSSTSAKP Trigger: AGGCTTAGCAGAGGTGCTTGAAGAAGGCCTCCACCTAAAGCCTCAGAGAAAGACACCTAGGAATGAAGGTGCCTGGGCTTGGAATGCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653072.1 |
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| CDS CCA 90 bp | CAGACGTCACTCTGGTTGTTCTGGAAATGGGACCCAACCACCTCATaGTGTATTATGACACTTGTGAGAAGGAACGAGGTGCCCAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: QTSLWLFWKWDPTTS*CIMTLVRRNEVPSF Trigger: GAAACTGGGCACCTCGTTCCTTCTCACAAGTGTCATAATACACCATGAGGTGGTTGGGTCCCATTTCCAGAACAACCAGAGTGACGTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653072.1 |
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| CDS CCA 90 bp | TGTTTAGAGAGCATTGTTCAGACGTCACTCTGGTTGTTCTGGAAATaGGACCCAACCACCTCATGGTGTATTATGACACTTGTGAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: CLESIVQTSLWLFWK*DPTTSWCIMTLVRR Trigger: CCTTCTCACAAGTGTCATAATACACCATGAGGTGGTTGGGTCCCATTTCCAGAACAACCAGAGTGACGTCTGAACAATGCTCTCTAAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653072.1 |
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| CDS GCA 72 bp | CCAGGCTGCTCCGGTCCATCAAGTTCTTCCGCCATTTaGATTCCAAGCCCAGGCACCTTCATTCCTAGGTGT | + |
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Preference number: 6 (lower is better) Translates to: PGCSGPSSSSAI*IPSPGTFIPRC Trigger: ACACCTAGGAATGAAGGTGCCTGGGCTTGGAATGCAAATGGCGGAAGAACTTGATGGACCGGAGCAGCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653072.1 |
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| CDS GCA 72 bp | TCCAAGGGGAATGGCAGAAAAGGACTCAGGCCAGGCTaGTCCGGTCCATCAAGTTCTTCCGCCATTTGCATT | + |
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Preference number: 6 (lower is better) Translates to: SKGNGRKGLRPG*SGPSSSSAICI Trigger: AATGCAAATGGCGGAAGAACTTGATGGACCGGAGCAGCCTGGCCTGAGTCCTTTTCTGCCATTCCCCTTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653072.1 |
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| CDS TCA 72 bp | CCAGGTGTGACCACAAATGATTACAAAAGGTTTATGTaGCAGGCCTCGAAGTGGAAGCTGCCCTTTCCACAG | + |
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Preference number: 6 (lower is better) Translates to: PGVTTNDYKRFM*QASKWKLPFPQ Trigger: CTGTGGAAAGGGCAGCTTCCACTTCGAGGCCTGTCACATAAACCTTTTGTAATCATTTGTGGTCACACCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653072.1 |
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| CDS CCA 72 bp | AGATCTTGTTTAGAGAGCATTGTTCAGACGTCACTCTaGTTGTTCTGGAAATGGGACCCAACCACCTCATGG | + |
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Preference number: 6 (lower is better) Translates to: RSCLESIVQTSL*LFWKWDPTTSW Trigger: CCATGAGGTGGTTGGGTCCCATTTCCAGAACAACCAGAGTGACGTCTGAACAATGCTCTCTAAACAAGATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000446579.1 ENST00000653072.1 |
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| CDS CCA 72 bp | AGCATTGTTCAGACGTCACTCTGGTTGTTCTGGAAATaGGACCCAACCACCTCATGGTGTATTATGACACTA | + |
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Preference number: 6 (lower is better) Translates to: SIVQTSLWLFWK*DPTTSWCIMTL Trigger: TAGTGTCATAATACACCATGAGGTGGTTGGGTCCCATTTCCAGAACAACCAGAGTGACGTCTGAACAATGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000446579.1 |
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| CDS CCA 72 bp | AGCATTGTTCAGACGTCACTCTGGTTGTTCTGGAAATaGGACCCAACCACCTCATGGTGTATTATGACACTT | + |
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Preference number: 6 (lower is better) Translates to: SIVQTSLWLFWK*DPTTSWCIMTL Trigger: AAGTGTCATAATACACCATGAGGTGGTTGGGTCCCATTTCCAGAACAACCAGAGTGACGTCTGAACAATGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653072.1 |
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