Pregenerated sensors for LINC00433 (Homo sapiens)
Ensembl gene IDs: ENSG00000229443Ensembl transcript IDs: ENST00000424165.1, ENST00000653293.1, ENST00000658219.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTCACCTGTGATCCCAGCTACCTGGGAGGCTGTGTGAAGATCACTTaGACCTGGGAGGTGAAGACTGCAGCGAGCTGTAATCTCGCCACT | + |
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Preference number: 5 (lower is better) Translates to: LTCDPSYLGGCVKIT*TWEVKTAASCNLAT Trigger: AGTGGCGAGATTACAGCTCGCTGCAGTCTTCACCTCCCAGGTTCAAGTGATCTTCACACAGCCTCCCAGGTAGCTGGGATCACAGGTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653293.1 |
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| CDS CCA 90 bp | TTACGTTCGCAGCTCATCAACTTCAGTACCCAGGTCCAGCTCAGTTaGAACCAGGCAGACCCTGACTTTTCCAGTGAATGCCAGACAGGG | + |
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Preference number: 5 (lower is better) Translates to: LRSQLINFSTQVQLS*NQADPDFSSECQTG Trigger: CCCTGTCTGGCATTCACTGGAAAAGTCAGGGTCTGCCTGGTTCCAACTGAGCTGGACCTGGGTACTGAAGTTGATGAGCTGCGAACGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658219.1 |
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| CDS GCA 90 bp | GTCCAGCTCAGTTGGAACCAGGCAGACCCTGACTTTTCCAGTGAATaGCAGACAGGGCAAATTAATACAGGTCACAAATGTGGGGGTGTT | + |
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Preference number: 5 (lower is better) Translates to: VQLSWNQADPDFSSE*QTGQINTGHKCGGV Trigger: AACACCCCCACATTTGTGACCTGTATTAATTTGCCCTGTCTGGCATTCACTGGAAAAGTCAGGGTCTGCCTGGTTCCAACTGAGCTGGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000658219.1 |
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| CDS GCA 90 bp | CTCAGTATTTTCATCTGTCCAAAGGTGGCAATCTGTGCTGGCAGATaGGCACCATATGACTCCGATCTTGTTAAATGTATAGTTTTAATG | + |
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Preference number: 5 (lower is better) Translates to: LSIFICPKVAICAGR*APYDSDLVKCIVLM Trigger: CATTAAAACTATACATTTAACAAGATCGGAGTCATATGGTGCGCATCTGCCAGCACAGATTGCCACCTTTGGACAGATGAAAATACTGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000424165.1 ENST00000658219.1 |
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| CDS CAA 90 bp | CTTGTAACCCCAGAAGATCACAAGTGGCCAAGGTGGGAGTATTGCTaGACCCCAAGAGTTCAGGACCAGTCTGGGCAAAGTGGCAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: LVTPEDHKWPRWEYC*TPRVQDQSGQSGKA Trigger: GGCCTTGCCACTTTGCCCAGACTGGTCCTGAACTCTTGGGGTCAAGCAATACTCCCACCTTGGCCACTTGTGATCTTCTGGGGTTACAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653293.1 |
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| CDS TCA 72 bp | GATCCCAGCTACCTGGGAGGCTGTGTGAAGATCACTTaGACCTGGGAGGTGAAGACTGCAGCGAGCTGTAAT | + |
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Preference number: 6 (lower is better) Translates to: DPSYLGGCVKIT*TWEVKTAASCN Trigger: ATTACAGCTCGCTGCAGTCTTCACCTCCCAGGTTCAAGTGATCTTCACACAGCCTCCCAGGTAGCTGGGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653293.1 |
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| CDS TCA 72 bp | AAATTCCCTCCTGAGGGCCGTGATCCAATTACCTCTTaGAGGCCTTACCTCTCGATACTGCCACACTGGGGA | + |
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Preference number: 6 (lower is better) Translates to: KFPPEGRDPITS*RPYLSILPHWG Trigger: TCCCCAGTGTGGCAGTATCGAGAGGTAAGGCCTTCAAGAGGTAATTGGATCACGGCCCTCAGGAGGGAATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424165.1 ENST00000653293.1 |
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| CDS TCA 72 bp | AGTTGTAGTGAGCTGAGATCACGCCACTGTATTGGGTaGCAGAGACAGACCTCACCTGTGATCCCAGCTACC | + |
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Preference number: 6 (lower is better) Translates to: SCSELRSRHCIG*QRQTSPVIPAT Trigger: GGTAGCTGGGATCACAGGTGAGGTCTGTCTCTGTCACCCAATACAGTGGCGTGATCTCAGCTCACTACAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653293.1 |
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| CDS CAA 90 bp | CACTCTTGTAACCCCAGAAGATCACAAGTGGCCAAGGTGGGAGTATaGCTTGACCCCAAGAGTTCAGGACCAGTCTGGGCAAAGTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: HSCNPRRSQVAKVGV*LDPKSSGPVWAKWQ Trigger: TTGCCACTTTGCCCAGACTGGTCCTGAACTCTTGGGGTCAAGCAATACTCCCACCTTGGCCACTTGTGATCTTCTGGGGTTACAAGAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653293.1 |
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| CDS TCA 72 bp | CGATACTGCCACACTGGGGACAAAGTTCATGCAACATaGATTTCAGAGGGAACAAACTTTCACGTCATAGTG | + |
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Preference number: 6 (lower is better) Translates to: RYCHTGDKVHAT*ISEGTNFHVIV Trigger: CACTATGACGTGAAAGTTTGTTCCCTCTGAAATTCATGTTGCATGAACTTTGTCCCCAGTGTGGCAGTATCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424165.1 ENST00000653293.1 |
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| CDS GCA 72 bp | TACCTCTCGATACTGCCACACTGGGGACAAAGTTCATaGAACATGAATTTCAGAGGGAACAAACTTTCACGT | + |
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Preference number: 6 (lower is better) Translates to: YLSILPHWGQSS*NMNFRGNKLSR Trigger: ACGTGAAAGTTTGTTCCCTCTGAAATTCATGTTGCATGAACTTTGTCCCCAGTGTGGCAGTATCGAGAGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424165.1 ENST00000653293.1 |
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| CDS GCA 72 bp | TTCATCTGTCCAAAGGTGGCAATCTGTGCTGGCAGATaGGCACCATATGACTCCGATCTTGTTAAATGTATA | + |
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Preference number: 6 (lower is better) Translates to: FICPKVAICAGR*APYDSDLVKCI Trigger: TATACATTTAACAAGATCGGAGTCATATGGTGCGCATCTGCCAGCACAGATTGCCACCTTTGGACAGATGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424165.1 ENST00000658219.1 |
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| CDS GCA 72 bp | ATTTCAGAGGGAACAAACTTTCACGTCATAGTGTTCTaGCCTTGGATCTCCAAAACTTATGTCTTTCTCACA | + |
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Preference number: 6 (lower is better) Translates to: ISEGTNFHVIVF*PWISKTYVFLT Trigger: TGTGAGAAAGACATAAGTTTTGGAGATCCAAGGGCAGAACACTATGACGTGAAAGTTTGTTCCCTCTGAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424165.1 ENST00000653293.1 |
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| CDS CCA 72 bp | GAGGGAACAAACTTTCACGTCATAGTGTTCTGCCCTTaGATCTCCAAAACTTATGTCTTTCTCACAACTTTA | + |
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Preference number: 6 (lower is better) Translates to: EGTNFHVIVFCP*ISKTYVFLTTL Trigger: TAAAGTTGTGAGAAAGACATAAGTTTTGGAGATCCAAGGGCAGAACACTATGACGTGAAAGTTTGTTCCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424165.1 ENST00000653293.1 |
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| CDS CAA 72 bp | AGAGGGAACAAACTTTCACGTCATAGTGTTCTGCCCTaGGATCTCCAAAACTTATGTCTTTCTCACAACTTT | + |
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Preference number: 6 (lower is better) Translates to: RGNKLSRHSVLP*DLQNLCLSHNF Trigger: AAAGTTGTGAGAAAGACATAAGTTTTGGAGATCCAAGGGCAGAACACTATGACGTGAAAGTTTGTTCCCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424165.1 ENST00000653293.1 |
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| CDS TCA 72 bp | CCAAATTCCAGAGTCTTACTTGTAAACCTCCGAAATTaGGGCAAGTTATCCACTTTCAAGATAAAATGGTGT | + |
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Preference number: 6 (lower is better) Translates to: PNSRVLLVNLRN*GKLSTFKIKWC Trigger: ACACCATTTTATCTTGAAAGTGGATAACTTGCCTCAATTTCGGAGGTTTACAAGTAAGACTCTGGAATTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424165.1 ENST00000653293.1 |
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| CDS CAA 72 bp | TCCAAATTCCAGAGTCTTACTTGTAAACCTCCGAAATaGAGGCAAGTTATCCACTTTCAAGATAAAATGGTG | + |
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Preference number: 6 (lower is better) Translates to: SKFQSLTCKPPK*RQVIHFQDKMV Trigger: CACCATTTTATCTTGAAAGTGGATAACTTGCCTCAATTTCGGAGGTTTACAAGTAAGACTCTGGAATTTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424165.1 ENST00000653293.1 |
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