Pregenerated sensors for LINC00399 (Homo sapiens)
Ensembl gene IDs: ENSG00000229792Ensembl transcript IDs: ENST00000439008.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATCCAGGATCAGGAGAGGCCAGGCTCCTCCCCTCTGCAAAGCGCGTaGACTTCCGTGGCTCCACCCCATTCTCCCAGGGCGCAGGCCGGT | + |
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Preference number: 5 (lower is better) Translates to: IQDQERPGSSPLQSA*TSVAPPHSPRAQAG Trigger: ACCGGCCTGCGCCCTGGGAGAATGGGGTGGAGCCACGGAAGTTCACGCGCTTTGCAGAGGGGAGGAGCCTGGCCTCTCCTGATCCTGGAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439008.1 |
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| CDS GCA 90 bp | TCTCAGGTACTATCCAGGATCAGGAGAGGCCAGGCTCCTCCCCTCTaGAAAGCGCGTGAACTTCCGTGGCTCCACCCCATTCTCCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: SQVLSRIRRGQAPPL*KARELPWLHPILPG Trigger: CCCTGGGAGAATGGGGTGGAGCCACGGAAGTTCACGCGCTTTGCAGAGGGGAGGAGCCTGGCCTCTCCTGATCCTGGATAGTACCTGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439008.1 |
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| CDS TCA 90 bp | CAGCAAAGCAACAGTCCTGCTAGCGGGTTTTCCCGCCTCAGCGATTaGATCTCAGGTACTATCCAGGATCAGGAGAGGCCAGGCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: QQSNSPASGFSRLSD*ISGTIQDQERPGSS Trigger: GGAGGAGCCTGGCCTCTCCTGATCCTGGATAGTACCTGAGATTCAATCGCTGAGGCGGGAAAACCCGCTAGCAGGACTGTTGCTTTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439008.1 |
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| CDS GCA 90 bp | TCGATCCTGGATCCTGACAGTGCGACTCCGCGTGCGGCTTCTCCCTaGCATGGTCTTAGATTTCAACCTGTCTCAGTGTATGAAGAGCGA | + |
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Preference number: 5 (lower is better) Translates to: SILDPDSATPRAASP*HGLRFQPVSVYEER Trigger: TCGCTCTTCATACACTGAGACAGGTTGAAATCTAAGACCATGGCAGGGAGAAGCCGCACGCGGAGTCGCACTGTCAGGATCCAGGATCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439008.1 |
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| CDS CCA 72 bp | CAGGCTCCTCCCCTCTGCAAAGCGCGTGAACTTCCGTaGCTCCACCCCATTCTCCCAGGGCGCAGGCCGGTT | + |
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Preference number: 6 (lower is better) Translates to: QAPPLCKARELP*LHPILPGRRPV Trigger: AACCGGCCTGCGCCCTGGGAGAATGGGGTGGAGCCACGGAAGTTCACGCGCTTTGCAGAGGGGAGGAGCCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439008.1 |
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| CDS CCA 72 bp | GTGGCTCCACCCCATTCTCCCAGGGCGCAGGCCGGTTaGGGTTTCCCCAGGGACCCTTTATACTTGGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: VAPPHSPRAQAG*GFPRDPLYLAV Trigger: AACAGCCAAGTATAAAGGGTCCCTGGGGAAACCCCAACCGGCCTGCGCCCTGGGAGAATGGGGTGGAGCCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439008.1 |
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| CDS GCA 72 bp | CTATCCAGGATCAGGAGAGGCCAGGCTCCTCCCCTCTaGAAAGCGCGTGAACTTCCGTGGCTCCACCCCATT | + |
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Preference number: 6 (lower is better) Translates to: LSRIRRGQAPPL*KARELPWLHPI Trigger: AATGGGGTGGAGCCACGGAAGTTCACGCGCTTTGCAGAGGGGAGGAGCCTGGCCTCTCCTGATCCTGGATAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439008.1 |
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| CDS CAA 90 bp | CCCAGGGCGCAGGCCGGTTGGGGTTTCCCCAGGGACCCTTTATACTaGGCTGTTCATTGTGGTGATATGGTTCCAAGCCTGAAGAACTTG | + |
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Preference number: 6 (lower is better) Translates to: PRAQAGWGFPRDPLY*AVHCGDMVPSLKNL Trigger: CAAGTTCTTCAGGCTTGGAACCATATCACCACAATGAACAGCCAAGTATAAAGGGTCCCTGGGGAAACCCCAACCGGCCTGCGCCCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439008.1 |
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| CDS TCA 72 bp | AGAACTTGCAATCTGATTAAGATCGATCCTGGATCCTaGCAGTGCGACTCCGCGTGCGGCTTCTCCCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: RTCNLIKIDPGS*QCDSACGFSLP Trigger: TGGCAGGGAGAAGCCGCACGCGGAGTCGCACTGTCAGGATCCAGGATCGATCTTAATCAGATTGCAAGTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439008.1 |
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| CDS GCA 72 bp | GATCCTGACAGTGCGACTCCGCGTGCGGCTTCTCCCTaGCATGGTCTTAGATTTCAACCTGTCTCAGTGTAT | + |
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Preference number: 6 (lower is better) Translates to: DPDSATPRAASP*HGLRFQPVSVY Trigger: ATACACTGAGACAGGTTGAAATCTAAGACCATGGCAGGGAGAAGCCGCACGCGGAGTCGCACTGTCAGGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439008.1 |
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