Pregenerated sensors for LINC00392 (Homo sapiens)
Ensembl gene IDs: ENSG00000228295Ensembl transcript IDs: ENST00000430033.1, ENST00000660666.1, ENST00000666930.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACGGGCACTGGAATTCAAGGCTTCCATGGCACAGGACTTCCCAGATaGGGTGGCTGCCGGGTGGAGAGGCTCCTCACTTCTCAGACGGGG | + |
|
Preference number: 5 (lower is better) Translates to: TGTGIQGFHGTGLPR*GGCRVERLLTSQTG Trigger: CCCCGTCTGAGAAGTGAGGAGCCTCTCCACCCGGCAGCCACCCCATCTGGGAAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTGCCCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666930.1 |
||
| CDS CCA 90 bp | CACTGGAATTCAAGGCTTCCATGGCACAGGACTTCCCAGATGGGGTaGCTGCCGGGTGGAGAGGCTCCTCACTTCTCAGACGGGGCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: HWNSRLPWHRTSQMG*LPGGEAPHFSDGAA Trigger: AGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCACCCGGCAGCCACCCCATCTGGGAAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666930.1 |
||
| CDS CCA 90 bp | ACTGGCAGCAGAAGAAGTAACGGGCACTGGAATTCAAGGCTTCCATaGCACAGGACTTCCCAGATGGGGTGGCTGCCGGGTGGAGAGGCT | + |
|
Preference number: 5 (lower is better) Translates to: TGSRRSNGHWNSRLP*HRTSQMGWLPGGEA Trigger: AGCCTCTCCACCCGGCAGCCACCCCATCTGGGAAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTGCCCGTTACTTCTTCTGCTGCCAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666930.1 |
||
| CDS CCA 90 bp | ACTGGCAGCAGAAGAAGTAACGGGCACTGGAATTCAAGGCTTCCATaGCACAGGACTTCTCAGACGGGGTGGTTGCCAGGCAGAGGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: TGSRRSNGHWNSRLP*HRTSQTGWLPGRGS Trigger: AGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTGCCCGTTACTTCTTCTGCTGCCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660666.1 |
||
| CDS CCA 90 bp | AGAACACAAATGGGAGCCACTGGCAGCAGAAGAAGTAACGGGCACTaGAATTCAAGGCTTCCATGGCACAGGACTTCTCAGACGGGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: RTQMGATGSRRSNGH*NSRLPWHRTSQTGW Trigger: CCACCCCGTCTGAGAAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTGCCCGTTACTTCTTCTGCTGCCAGTGGCTCCCATTTGTGTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660666.1 |
||
| CDS CCA 90 bp | AGAACACAAATGGGAGCCACTGGCAGCAGAAGAAGTAACGGGCACTaGAATTCAAGGCTTCCATGGCACAGGACTTCCCAGATGGGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: RTQMGATGSRRSNGH*NSRLPWHRTSQMGW Trigger: CCACCCCATCTGGGAAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTGCCCGTTACTTCTTCTGCTGCCAGTGGCTCCCATTTGTGTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666930.1 |
||
| CDS GCA 90 bp | GGAGCTGATGAGTACACAGGTATCCCATTTCTGCATCGAATCCGATaGCACAGGAGAGAACACAAATGGGAGCCACTGGCAGCAGAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: GADEYTGIPFLHRIR*HRREHKWEPLAAEE Trigger: TTCTTCTGCTGCCAGTGGCTCCCATTTGTGTTCTCTCCTGTGGCATCGGATTCGATGCAGAAATGGGATACCTGTGTACTCATCAGCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430033.1 ENST00000660666.1 |
||
| CDS CCA 90 bp | ACTGGCAGCAGAAGAAGTAACGGGCACTGGAATTCAAGGCTTCCATaGCACAGGACTGAAATTCCATTAGGTGCGAAGAACCATGGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: TGSRRSNGHWNSRLP*HRTEIPLGAKNHGR Trigger: CCTACCATGGTTCTTCGCACCTAATGGAATTTCAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTGCCCGTTACTTCTTCTGCTGCCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430033.1 |
||
| CDS GCA 90 bp | ATCTGTAGGCAAGAGAGTAAAATCCCATTTCTGCATCGAATCCGATaGCACAGGAGAGAACACAAATGGGAGCCACTGGCAGCAGAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: ICRQESKIPFLHRIR*HRREHKWEPLAAEE Trigger: TTCTTCTGCTGCCAGTGGCTCCCATTTGTGTTCTCTCCTGTGGCATCGGATTCGATGCAGAAATGGGATTTTACTCTCTTGCCTACAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666930.1 |
||
| CDS CCA 72 bp | ATGGCACAGGACTTCCCAGATGGGGTGGCTGCCGGGTaGAGAGGCTCCTCACTTCTCAGACGGGGCAGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: MAQDFPDGVAAG*RGSSLLRRGSC Trigger: GCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCACCCGGCAGCCACCCCATCTGGGAAGTCCTGTGCCAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666930.1 |
||
| CDS GCA 72 bp | GGCTTCCATGGCACAGGACTTCTCAGACGGGGTGGTTaGCAGGCAGAGGGTCTCCTCACTTCTCAGACGGGG | + |
|
Preference number: 6 (lower is better) Translates to: GFHGTGLLRRGG*QAEGLLTSQTG Trigger: CCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTCCTGTGCCATGGAAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660666.1 |
||
| CDS CCA 72 bp | TCAAGGCTTCCATGGCACAGGACTTCCCAGATGGGGTaGCTGCCGGGTGGAGAGGCTCCTCACTTCTCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: SRLPWHRTSQMG*LPGGEAPHFSD Trigger: GTCTGAGAAGTGAGGAGCCTCTCCACCCGGCAGCCACCCCATCTGGGAAGTCCTGTGCCATGGAAGCCTTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666930.1 |
||
| CDS CAA 72 bp | AGGCTTCCATGGCACAGGACTTCTCAGACGGGGTGGTaGCCAGGCAGAGGGTCTCCTCACTTCTCAGACGGG | + |
|
Preference number: 6 (lower is better) Translates to: RLPWHRTSQTGW*PGRGSPHFSDG Trigger: CCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTCCTGTGCCATGGAAGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660666.1 |
||
| CDS CCA 72 bp | TCAAGGCTTCCATGGCACAGGACTTCTCAGACGGGGTaGTTGCCAGGCAGAGGGTCTCCTCACTTCTCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: SRLPWHRTSQTG*LPGRGSPHFSD Trigger: GTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTCCTGTGCCATGGAAGCCTTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660666.1 |
||
| CDS CCA 72 bp | AGAAGAAGTAACGGGCACTGGAATTCAAGGCTTCCATaGCACAGGACTTCTCAGACGGGGTGGTTGCCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: RRSNGHWNSRLP*HRTSQTGWLPG Trigger: GCCTGGCAACCACCCCGTCTGAGAAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTGCCCGTTACTTCTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660666.1 |
||
| CDS CCA 72 bp | ATGGGAGCCACTGGCAGCAGAAGAAGTAACGGGCACTaGAATTCAAGGCTTCCATGGCACAGGACTTCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: MGATGSRRSNGH*NSRLPWHRTSQ Trigger: CTGGGAAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTGCCCGTTACTTCTTCTGCTGCCAGTGGCTCCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666930.1 |
||
| CDS CCA 72 bp | ATGGGAGCCACTGGCAGCAGAAGAAGTAACGGGCACTaGAATTCAAGGCTTCCATGGCACAGGACTTCTCAG | + |
|
Preference number: 6 (lower is better) Translates to: MGATGSRRSNGH*NSRLPWHRTSQ Trigger: CTGAGAAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTGCCCGTTACTTCTTCTGCTGCCAGTGGCTCCCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660666.1 |
||
| CDS GCA 72 bp | GAGTACACAGGTATCCCATTTCTGCATCGAATCCGATaGCACAGGAGAGAACACAAATGGGAGCCACTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: EYTGIPFLHRIR*HRREHKWEPLA Trigger: TGCCAGTGGCTCCCATTTGTGTTCTCTCCTGTGGCATCGGATTCGATGCAGAAATGGGATACCTGTGTACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430033.1 ENST00000660666.1 |
||
| CDS CCA 72 bp | ATGGGAGCCACTGGCAGCAGAAGAAGTAACGGGCACTaGAATTCAAGGCTTCCATGGCACAGGACTGAAATT | + |
|
Preference number: 6 (lower is better) Translates to: MGATGSRRSNGH*NSRLPWHRTEI Trigger: AATTTCAGTCCTGTGCCATGGAAGCCTTGAATTCCAGTGCCCGTTACTTCTTCTGCTGCCAGTGGCTCCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430033.1 |
||
| CDS GCA 72 bp | CAAGAGAGTAAAATCCCATTTCTGCATCGAATCCGATaGCACAGGAGAGAACACAAATGGGAGCCACTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: QESKIPFLHRIR*HRREHKWEPLA Trigger: TGCCAGTGGCTCCCATTTGTGTTCTCTCCTGTGGCATCGGATTCGATGCAGAAATGGGATTTTACTCTCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666930.1 |
||