Pregenerated sensors for LINC00368 (Homo sapiens)
Ensembl gene IDs: ENSG00000225870Ensembl transcript IDs: ENST00000422994.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGTAAAATAGCAGAGACCGAATCCAGGACTGGGTGTGAAAACTGCTaGTTGGTCGCAAAGCCTGAAACAAATACTGCCTTAGAAGTGAGC | + |
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Preference number: 5 (lower is better) Translates to: CKIAETESRTGCENC*LVAKPETNTALEVS Trigger: GCTCACTTCTAAGGCAGTATTTGTTTCAGGCTTTGCGACCAATCAGCAGTTTTCACACCCAGTCCTGGATTCGGTCTCTGCTATTTTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS TCA 90 bp | TTGACCCTGGGGAATCTGATGACTATGTGTCTTGGGGATGGTCATTaGTATCATTTAGATATTTGTCCCTGCTCAAATCTCATGTTAGGA | + |
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Preference number: 5 (lower is better) Translates to: LTLGNLMTMCLGDGH*YHLDICPCSNLMLG Trigger: TCCTAACATGAGATTTGAGCAGGGACAAATATCTAAATGATATCAATGACCATCCCCAAGACACATAGTCATCAGATTCCCCAGGGTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS GCA 90 bp | AATACTGCCTTAGAAGTGAGCGGTACTGTGATTCTTCTGTTAAAATaGCCGTTCATGCTTTACCTATATTCTGTGCAAAAATGTGTTCAT | + |
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Preference number: 5 (lower is better) Translates to: NTALEVSGTVILLLK*PFMLYLYSVQKCVH Trigger: ATGAACACATTTTTGCACAGAATATAGGTAAAGCATGAACGGGCATTTTAACAGAAGAATCACAGTACCGCTCACTTCTAAGGCAGTATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS CAA 90 bp | CCTGTACTACCTAAGAGAGGCTTGCAAGTGCTGTCCTCAGTGCCCTaGCCTGGGTGTAAAATAGCAGAGACCGAATCCAGGACTGGGTGT | + |
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Preference number: 6 (lower is better) Translates to: PVLPKRGLQVLSSVP*PGCKIAETESRTGC Trigger: ACACCCAGTCCTGGATTCGGTCTCTGCTATTTTACACCCAGGCAAGGGCACTGAGGACAGCACTTGCAAGCCTCTCTTAGGTAGTACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS CAA 72 bp | GCCAATGTTATGCTTCCTGTACTACCTAAGAGAGGCTaGCAAGTGCTGTCCTCAGTGCCCTTGCCTGGGTGT | + |
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Preference number: 6 (lower is better) Translates to: ANVMLPVLPKRG*QVLSSVPLPGC Trigger: ACACCCAGGCAAGGGCACTGAGGACAGCACTTGCAAGCCTCTCTTAGGTAGTACAGGAAGCATAACATTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS GCA 72 bp | CCAATGTTATGCTTCCTGTACTACCTAAGAGAGGCTTaGAAGTGCTGTCCTCAGTGCCCTTGCCTGGGTGTA | + |
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Preference number: 6 (lower is better) Translates to: PMLCFLYYLREA*KCCPQCPCLGV Trigger: TACACCCAGGCAAGGGCACTGAGGACAGCACTTGCAAGCCTCTCTTAGGTAGTACAGGAAGCATAACATTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS CAA 90 bp | GAAGCAGATGCCAATGTTATGCTTCCTGTACTACCTAAGAGAGGCTaGCAAGTGCTGTCCTCAGTGCCCTTGCCTGGGTGTAAAATAGCA | + |
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Preference number: 6 (lower is better) Translates to: EADANVMLPVLPKRG*QVLSSVPLPGCKIA Trigger: TGCTATTTTACACCCAGGCAAGGGCACTGAGGACAGCACTTGCAAGCCTCTCTTAGGTAGTACAGGAAGCATAACATTGGCATCTGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS TCA 72 bp | GCAGAGACCGAATCCAGGACTGGGTGTGAAAACTGCTaGTTGGTCGCAAAGCCTGAAACAAATACTGCCTTA | + |
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Preference number: 6 (lower is better) Translates to: AETESRTGCENC*LVAKPETNTAL Trigger: TAAGGCAGTATTTGTTTCAGGCTTTGCGACCAATCAGCAGTTTTCACACCCAGTCCTGGATTCGGTCTCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS TCA 72 bp | GGGAATCTGATGACTATGTGTCTTGGGGATGGTCATTaGTATCATTTAGATATTTGTCCCTGCTCAAATCTC | + |
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Preference number: 6 (lower is better) Translates to: GNLMTMCLGDGH*YHLDICPCSNL Trigger: GAGATTTGAGCAGGGACAAATATCTAAATGATATCAATGACCATCCCCAAGACACATAGTCATCAGATTCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS CCA 72 bp | CATTTTGACCCTGGGGAATCTGATGACTATGTGTCTTaGGGATGGTCATTGATATCATTTAGATATTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: HFDPGESDDYVS*GWSLISFRYLS Trigger: GGACAAATATCTAAATGATATCAATGACCATCCCCAAGACACATAGTCATCAGATTCCCCAGGGTCAAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS CAA 72 bp | GGGGAATCTGATGACTATGTGTCTTGGGGATGGTCATaGATATCATTTAGATATTTGTCCCTGCTCAAATCT | + |
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Preference number: 6 (lower is better) Translates to: GESDDYVSWGWS*ISFRYLSLLKS Trigger: AGATTTGAGCAGGGACAAATATCTAAATGATATCAATGACCATCCCCAAGACACATAGTCATCAGATTCCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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| CDS GCA 72 bp | TTAGAAGTGAGCGGTACTGTGATTCTTCTGTTAAAATaGCCGTTCATGCTTTACCTATATTCTGTGCAAAAA | + |
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Preference number: 6 (lower is better) Translates to: LEVSGTVILLLK*PFMLYLYSVQK Trigger: TTTTTGCACAGAATATAGGTAAAGCATGAACGGGCATTTTAACAGAAGAATCACAGTACCGCTCACTTCTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422994.1 |
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