Pregenerated sensors for LINC00351 (Homo sapiens)
Ensembl gene IDs: ENSG00000226317Ensembl transcript IDs: ENST00000424926.2, ENST00000655792.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGTTCCTTCAGATGCTCAAATGTGTCCGGAGTTTATTTCTTCTGGTaGGTTCGTGGTCTCCCTGGCTTCAGGAGTGAAGCTGCAAACCTT | + |
|
Preference number: 5 (lower is better) Translates to: CSFRCSNVSGVYFFW*VRGLPGFRSEAANL Trigger: AAGGTTTGCAGCTTCACTCCTGAAGCCAGGGAGACCACGAACTCACCAGAAGAAATAAACTCCGGACACATTTGAGCATCTGAAGGAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000424926.2 |
||
| CDS TCA 90 bp | TTGGTGACTTCAAAAATGAAGCTGCAGACCCTTGGACCCTCGCAGTaGGTGTTACAGTTCTTAAAAGATGGTGTGTTCGGAGTTTGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: LVTSKMKLQTLGPSQ*VLQFLKDGVFGVCS Trigger: GGAACAAACTCCGAACACACCATCTTTTAAGAACTGTAACACTCACTGCGAGGGTCCAAGGGTCTGCAGCTTCATTTTTGAAGTCACCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000424926.2 ENST00000655792.1 |
||
| CDS CCA 90 bp | TTTATATTATCCTTGCTCAGCTGGAATTGCTGGAAGAAGTGGAGTTaGACTAGGCTTCTCTCTCTCTCTCTTTCACCTCTTTGTCCAGTA | + |
|
Preference number: 5 (lower is better) Translates to: FILSLLSWNCWKKWS*TRLLSLSLSPLCPV Trigger: TACTGGACAAAGAGGTGAAAGAGAGAGAGAGAGAAGCCTAGTCCAACTCCACTTCTTCCAGCAATTCCAGCTGAGCAAGGATAATATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655792.1 |
||
| CDS TCA 90 bp | GATGCATTTCCCAAAATGATTGATAGGTCAGTCATCCAAGAAGGATaGTCATCATGGTCTTATAACTTTCAGCTGTGCTGTAAAACATGC | + |
|
Preference number: 5 (lower is better) Translates to: DAFPKMIDRSVIQEG*SSWSYNFQLCCKTC Trigger: GCATGTTTTACAGCACAGCTGAAAGTTATAAGACCATGATGATCATCCTTCTTGGATGACTGACCTATCAATCATTTTGGGAAATGCATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655792.1 |
||
| CDS TCA 90 bp | CCTCATGACCCAATGGTACATAAATGTTATGTCCATAACATAGGCTaGCAATTGATTCTAGACTTTGACCTTAATCATTTTTCTGTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: PHDPMVHKCYVHNIG*QLILDFDLNHFSVA Trigger: GGCCACAGAAAAATGATTAAGGTCAAAGTCTAGAATCAATTGTCAGCCTATGTTATGGACATAACATTTATGTACCATTGGGTCATGAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000424926.2 |
||
| CDS TCA 72 bp | CATCATAATTTAATGCCTGCAGCTAGAGAGAGAATCTaGAGCCCAGGCCGCAGGAGTGGTCGTGCCAGCCGA | + |
|
Preference number: 6 (lower is better) Translates to: HHNLMPAARERI*SPGRRSGRASR Trigger: TCGGCTGGCACGACCACTCCTGCGGCCTGGGCTTCAGATTCTCTCTCTAGCTGCAGGCATTAAATTATGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000424926.2 |
||
| CDS CCA 72 bp | AGTTGGCAGCTCCTTTCTGCTCCAAGGAATGTCTGCTaGGCTCACTCACTCACTCCGGTATCTGCAATCAGC | + |
|
Preference number: 6 (lower is better) Translates to: SWQLLSAPRNVC*AHSLTPVSAIS Trigger: GCTGATTGCAGATACCGGAGTGAGTGAGTGAGCCCAGCAGACATTCCTTGGAGCAGAAAGGAGCTGCCAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655792.1 |
||
| CDS TCA 72 bp | AGATGCTCAAATGTGTCCGGAGTTTATTTCTTCTGGTaGGTTCGTGGTCTCCCTGGCTTCAGGAGTGAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: RCSNVSGVYFFW*VRGLPGFRSEA Trigger: AGCTTCACTCCTGAAGCCAGGGAGACCACGAACTCACCAGAAGAAATAAACTCCGGACACATTTGAGCATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424926.2 ENST00000655792.1 |
||
| CDS CCA 72 bp | TCCTTGCTCAGCTGGAATTGCTGGAAGAAGTGGAGTTaGACTAGGCTTCTCTCTCTCTCTCTTTCACCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: SLLSWNCWKKWS*TRLLSLSLSPL Trigger: AAGAGGTGAAAGAGAGAGAGAGAGAAGCCTAGTCCAACTCCACTTCTTCCAGCAATTCCAGCTGAGCAAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655792.1 |
||
| CDS TCA 72 bp | TCAAAAATGAAGCTGCAGACCCTTGGACCCTCGCAGTaGGTGTTACAGTTCTTAAAAGATGGTGTGTTCGGA | + |
|
Preference number: 6 (lower is better) Translates to: SKMKLQTLGPSQ*VLQFLKDGVFG Trigger: TCCGAACACACCATCTTTTAAGAACTGTAACACTCACTGCGAGGGTCCAAGGGTCTGCAGCTTCATTTTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000424926.2 ENST00000655792.1 |
||
| CDS CCA 72 bp | GAGTTGACTGTTTTTGTAACTTGGACTGTATTCAGTTaGCAGCTCCTTTCTGCTCCAAGGAATGTCTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: ELTVFVTWTVFS*QLLSAPRNVCW Trigger: CCAGCAGACATTCCTTGGAGCAGAAAGGAGCTGCCAACTGAATACAGTCCAAGTTACAAAAACAGTCAACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000655792.1 |
||
| CDS CCA 72 bp | ATATTATCCTTGCTCAGCTGGAATTGCTGGAAGAAGTaGAGTTGGACTAGGCTTCTCTCTCTCTCTCTTTCA | + |
|
Preference number: 6 (lower is better) Translates to: ILSLLSWNCWKK*SWTRLLSLSLS Trigger: TGAAAGAGAGAGAGAGAGAAGCCTAGTCCAACTCCACTTCTTCCAGCAATTCCAGCTGAGCAAGGATAATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655792.1 |
||
| CDS TCA 72 bp | TGCTTTAGGCCTATGGGATGCAGTGATGATGATGACTaGGTCCTTGCTCTAAAAGAGTTGACTGTTTTTGTA | + |
|
Preference number: 6 (lower is better) Translates to: CFRPMGCSDDDD*VLALKELTVFV Trigger: TACAAAAACAGTCAACTCTTTTAGAGCAAGGACTCAGTCATCATCATCACTGCATCCCATAGGCCTAAAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000655792.1 |
||
| CDS TCA 72 bp | CCCAAAATGATTGATAGGTCAGTCATCCAAGAAGGATaGTCATCATGGTCTTATAACTTTCAGCTGTGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: PKMIDRSVIQEG*SSWSYNFQLCC Trigger: ACAGCACAGCTGAAAGTTATAAGACCATGATGATCATCCTTCTTGGATGACTGACCTATCAATCATTTTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655792.1 |
||
| CDS CAA 90 bp | AGTATCCAAGATGCCTACAGTTATATTATCAGATTTATATTATCCTaGCTCAGCTGGAATTGCTGGAAGAAGTGGAGTTGGACTAGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: SIQDAYSYIIRFILS*LSWNCWKKWSWTRL Trigger: AAGCCTAGTCCAACTCCACTTCTTCCAGCAATTCCAGCTGAGCAAGGATAATATAAATCTGATAATATAACTGTAGGCATCTTGGATACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655792.1 |
||