Pregenerated sensors for LINC00308 (Homo sapiens)
Ensembl gene IDs: ENSG00000184856Ensembl transcript IDs: ENST00000419431.2, ENST00000572717.2, ENST00000657104.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGTCACAGGTCGCAGGAGCCTCTCCCAACAGCTCAGGGCACAAGGTaGAAACCAGCATTGGACAAGACATCATCTTATCTCAGGTACACA | + |
|
Preference number: 5 (lower is better) Translates to: GHRSQEPLPTAQGTR*KPALDKTSSYLRYT Trigger: TGTGTACCTGAGATAAGATGATGTCTTGTCCAATGCTGGTTTCCACCTTGTGCCCTGAGCTGTTGGGAGAGGCTCCTGCGACCTGTGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419431.2 ENST00000572717.2 ENST00000657104.1 |
||
| CDS CCA 90 bp | AGGAGCCTCTCCCAACAGCTCAGGGCACAAGGTGGAAACCAGCATTaGACAAGACATCATCTTATCTCAGGTACACACACACAGACATTC | + |
|
Preference number: 5 (lower is better) Translates to: RSLSQQLRAQGGNQH*TRHHLISGTHTQTF Trigger: GAATGTCTGTGTGTGTGTACCTGAGATAAGATGATGTCTTGTCCAATGCTGGTTTCCACCTTGTGCCCTGAGCTGTTGGGAGAGGCTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419431.2 ENST00000572717.2 ENST00000657104.1 |
||
| CDS TCA 90 bp | CTTGTATTCTTCCTCTACTCGCTTCTGCAGTGGCGTGAGGGTATCTaGATAAACAGCCTAACACTCATCGTTGCTTATTCACTCATGCAG | + |
|
Preference number: 5 (lower is better) Translates to: LVFFLYSLLQWREGI*INSLTLIVAYSLMQ Trigger: CTGCATGAGTGAATAAGCAACGATGAGTGTTAGGCTGTTTATTCAGATACCCTCACGCCACTGCAGAAGCGAGTAGAGGAAGAATACAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419431.2 ENST00000572717.2 |
||
| CDS TCA 90 bp | CTTGTATTCTTCCTCTACTCGCTTCTGCAGTGGCGTGAGGGTATCTaGATAAACAGCCTAACACTCATCGTTGCTTATTCACTGGAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: LVFFLYSLLQWREGI*INSLTLIVAYSLES Trigger: ACTCTCCAGTGAATAAGCAACGATGAGTGTTAGGCTGTTTATTCAGATACCCTCACGCCACTGCAGAAGCGAGTAGAGGAAGAATACAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657104.1 |
||
| CDS CCA 90 bp | ACAGTCCTTCAGAATCCCATTCATTTATTTAGCTGCTCATGTAAGTaGACTTGCAGTGGACAGAAGAGTTCTCCTTCAGCATCAGGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: TVLQNPIHLFSCSCK*TCSGQKSSPSASGP Trigger: TGGGCCTGATGCTGAAGGAGAACTCTTCTGTCCACTGCAAGTCCACTTACATGAGCAGCTAAATAAATGAATGGGATTCTGAAGGACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419431.2 ENST00000572717.2 |
||
| CDS CCA 90 bp | CTGAATAAACAGCCTAACACTCATCGTTGCTTATTCACTGGAGAGTaGGAAGAAACCATTATCCAGGTTGGTCTTGAACTCCTGGCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: LNKQPNTHRCLFTGE*EETIIQVGLELLAS Trigger: TGAGGCCAGGAGTTCAAGACCAACCTGGATAATGGTTTCTTCCCACTCTCCAGTGAATAAGCAACGATGAGTGTTAGGCTGTTTATTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657104.1 |
||
| CDS GCA 90 bp | CTTCAGAATCCCATTCATTTATTTAGCTGCTCATGTAAGTGGACTTaGAGTGGACAGAAGAGTTCTCCTTCAGCATCAGGCCCAATTTCT | + |
|
Preference number: 5 (lower is better) Translates to: LQNPIHLFSCSCKWT*SGQKSSPSASGPIS Trigger: AGAAATTGGGCCTGATGCTGAAGGAGAACTCTTCTGTCCACTGCAAGTCCACTTACATGAGCAGCTAAATAAATGAATGGGATTCTGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419431.2 ENST00000572717.2 |
||
| CDS GCA 90 bp | TGCTCTCCACATACAGTCCTTCAGAATCCCATTCATTTATTTAGCTaGTCATGTAAGTGGACTTGCAGTGGACAGAAGAGTTCTCCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: CSPHTVLQNPIHLFS*SCKWTCSGQKSSPS Trigger: TGAAGGAGAACTCTTCTGTCCACTGCAAGTCCACTTACATGAGCAGCTAAATAAATGAATGGGATTCTGAAGGACTGTATGTGGAGAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419431.2 ENST00000572717.2 |
||
| CDS CCA 72 bp | TCGCAGGAGCCTCTCCCAACAGCTCAGGGCACAAGGTaGAAACCAGCATTGGACAAGACATCATCTTATCTC | + |
|
Preference number: 6 (lower is better) Translates to: SQEPLPTAQGTR*KPALDKTSSYL Trigger: GAGATAAGATGATGTCTTGTCCAATGCTGGTTTCCACCTTGTGCCCTGAGCTGTTGGGAGAGGCTCCTGCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419431.2 ENST00000572717.2 ENST00000657104.1 |
||
| CDS CAA 90 bp | CAGGAGCCTCTCCCAACAGCTCAGGGCACAAGGTGGAAACCAGCATaGGACAAGACATCATCTTATCTCAGGTACACACACACAGACATT | + |
|
Preference number: 6 (lower is better) Translates to: QEPLPTAQGTRWKPA*DKTSSYLRYTHTDI Trigger: AATGTCTGTGTGTGTGTACCTGAGATAAGATGATGTCTTGTCCAATGCTGGTTTCCACCTTGTGCCCTGAGCTGTTGGGAGAGGCTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419431.2 ENST00000572717.2 ENST00000657104.1 |
||
| CDS CAA 72 bp | CTCCCAACAGCTCAGGGCACAAGGTGGAAACCAGCATaGGACAAGACATCATCTTATCTCAGGTACACACAC | + |
|
Preference number: 6 (lower is better) Translates to: LPTAQGTRWKPA*DKTSSYLRYTH Trigger: GTGTGTGTACCTGAGATAAGATGATGTCTTGTCCAATGCTGGTTTCCACCTTGTGCCCTGAGCTGTTGGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419431.2 ENST00000572717.2 ENST00000657104.1 |
||
| CDS CCA 72 bp | TCCCAACAGCTCAGGGCACAAGGTGGAAACCAGCATTaGACAAGACATCATCTTATCTCAGGTACACACACA | + |
|
Preference number: 6 (lower is better) Translates to: SQQLRAQGGNQH*TRHHLISGTHT Trigger: TGTGTGTGTACCTGAGATAAGATGATGTCTTGTCCAATGCTGGTTTCCACCTTGTGCCCTGAGCTGTTGGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419431.2 ENST00000572717.2 ENST00000657104.1 |
||
| CDS TCA 72 bp | CCTTGTATTCTTCCTCTACTCGCTTCTGCAGTGGCGTaGGGGTATCTGAATAAACAGCCTAACACTCATCGT | + |
|
Preference number: 6 (lower is better) Translates to: PCILPLLASAVA*GYLNKQPNTHR Trigger: ACGATGAGTGTTAGGCTGTTTATTCAGATACCCTCACGCCACTGCAGAAGCGAGTAGAGGAAGAATACAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000419431.2 ENST00000572717.2 ENST00000657104.1 |
||
| CDS TCA 72 bp | TTCCTCTACTCGCTTCTGCAGTGGCGTGAGGGTATCTaGATAAACAGCCTAACACTCATCGTTGCTTATTCA | + |
|
Preference number: 6 (lower is better) Translates to: FLYSLLQWREGI*INSLTLIVAYS Trigger: TGAATAAGCAACGATGAGTGTTAGGCTGTTTATTCAGATACCCTCACGCCACTGCAGAAGCGAGTAGAGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419431.2 ENST00000572717.2 ENST00000657104.1 |
||
| CDS CCA 72 bp | CAGCCTAACACTCATCGTTGCTTATTCACTGGAGAGTaGGAAGAAACCATTATCCAGGTTGGTCTTGAACTC | + |
|
Preference number: 6 (lower is better) Translates to: QPNTHRCLFTGE*EETIIQVGLEL Trigger: GAGTTCAAGACCAACCTGGATAATGGTTTCTTCCCACTCTCCAGTGAATAAGCAACGATGAGTGTTAGGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657104.1 |
||
| CDS TCA 72 bp | CAGGTACACACACACAGACATTCACTCCTCCTGGGATaGTGTAGACATACCAATTCACTTAAAGTGTACACC | + |
|
Preference number: 6 (lower is better) Translates to: QVHTHRHSLLLG*CRHTNSLKVYT Trigger: GGTGTACACTTTAAGTGAATTGGTATGTCTACATCATCCCAGGAGGAGTGAATGTCTGTGTGTGTGTACCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419431.2 ENST00000572717.2 ENST00000657104.1 |
||
| CDS TCA 72 bp | CATACCAATTCACTTAAAGTGTACACCTTTAGTGGATaGAATAGCCATCCTCTTTCCACAGGCTGGGAGACA | + |
|
Preference number: 6 (lower is better) Translates to: HTNSLKVYTFSG*NSHPLSTGWET Trigger: TGTCTCCCAGCCTGTGGAAAGAGGATGGCTATTTCATCCACTAAAGGTGTACACTTTAAGTGAATTGGTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419431.2 ENST00000572717.2 ENST00000657104.1 |
||
| CDS CCA 72 bp | CAGAATCCCATTCATTTATTTAGCTGCTCATGTAAGTaGACTTGCAGTGGACAGAAGAGTTCTCCTTCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: QNPIHLFSCSCK*TCSGQKSSPSA Trigger: TGCTGAAGGAGAACTCTTCTGTCCACTGCAAGTCCACTTACATGAGCAGCTAAATAAATGAATGGGATTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419431.2 ENST00000572717.2 |
||
| CDS CAA 72 bp | TATAAATATACAGAAAGAGACAATAGAAGCCTAGTATaGCTTGTAAGCCAGACTGCCATGGATCAGGAAAGC | + |
|
Preference number: 6 (lower is better) Translates to: YKYTERDNRSLV*LVSQTAMDQES Trigger: GCTTTCCTGATCCATGGCAGTCTGGCTTACAAGCAATACTAGGCTTCTATTGTCTCTTTCTGTATATTTATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419431.2 ENST00000657104.1 |
||