Pregenerated sensors for LINC00298 (Homo sapiens)
Ensembl gene IDs: ENSG00000235665Ensembl transcript IDs: ENST00000426969.5, ENST00000456681.1, ENST00000663636.1, ENST00000664226.1
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CACTTAACTGGACGCCTGGAACACGGTGAGGCTTCAGGCCACGCATaGTTCCTTCATTCAAACTGGCACTCACTGCGGCACACCGGCCCT | + |
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Preference number: 5 (lower is better) Translates to: HLTGRLEHGEASGHA*FLHSNWHSLRHTGP Trigger: AGGGCCGGTGTGCCGCAGTGAGTGCCAGTTTGAATGAAGGAAGCATGCGTGGCCTGAAGCCTCACCGTGTTCCAGGCGTCCAGTTAAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000426969.5 ENST00000456681.1 ENST00000663636.1 ENST00000664226.1 |
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| CDS TCA 90 bp | CTTTCCTGGTGTGAATCCCAGGCCACGGGAGCACAGAGGAGGAAGTaGCCACCGGGGACAAATAGTGGGCAGAGCAGGATGGACTTCAAA | + |
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Preference number: 5 (lower is better) Translates to: LSWCESQATGAQRRK*PPGTNSGQSRMDFK Trigger: TTTGAAGTCCATCCTGCTCTGCCCACTATTTGTCCCCGGTGGTCACTTCCTCCTCTGTGCTCCCGTGGCCTGGGATTCACACCAGGAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456681.1 ENST00000663636.1 |
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| CDS GCA 90 bp | AGGCTTCAGGCCACGCATGCTTCCTTCATTCAAACTGGCACTCACTaGGGCACACCGGCCCTTTTTGAGCACCTCAGTGTGTGTAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: RLQATHASFIQTGTH*GTPALFEHLSVCSQ Trigger: CTGGCTACACACACTGAGGTGCTCAAAAAGGGCCGGTGTGCCGCAGTGAGTGCCAGTTTGAATGAAGGAAGCATGCGTGGCCTGAAGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS TCA 90 bp | TGGCTGGAAGTCCAAGGGCCAGGTGCTGGCAGGTTTGGCATCCGGTaGGGCCCTGCTTCCTGGTTCATAGATGGTGTCTTTTCACTTTGT | + |
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Preference number: 5 (lower is better) Translates to: WLEVQGPGAGRFGIR*GPASWFIDGVFSLC Trigger: ACAAAGTGAAAAGACACCATCTATGAACCAGGAAGCAGGGCCTCACCGGATGCCAAACCTGCCAGCACCTGGCCCTTGGACTTCCAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS GCA 90 bp | AATTTCTTCTTCACAGTTCTGGTGGCTGGAAGTCCAAGGGCCAGGTaGTGGCAGGTTTGGCATCCGGTGAGGCCCTGCTTCCTGGTTCAT | + |
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Preference number: 5 (lower is better) Translates to: NFFFTVLVAGSPRAR*WQVWHPVRPCFLVH Trigger: ATGAACCAGGAAGCAGGGCCTCACCGGATGCCAAACCTGCCAGCACCTGGCCCTTGGACTTCCAGCCACCAGAACTGTGAAGAAGAAATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS GCA 90 bp | AGCCTGCCATCCAGTCCAGAACCGTTCAGGACCAACTTGAAAAAGTaGCTGATTGCGGAAAGCAAGCCCCCAGCACATGCTCCTGGTCCA | + |
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Preference number: 5 (lower is better) Translates to: SLPSSPEPFRTNLKK*LIAESKPPAHAPGP Trigger: TGGACCAGGAGCATGTGCTGGGGGCTTGCTTTCCGCAATCAGGCACTTTTTCAAGTTGGTCCTGAACGGTTCTGGACTGGATGGCAGGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000663636.1 |
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| CDS GCA 90 bp | TTTCATGTCACCCTCAGGACAGGGCTGCCTCTGCCCATCCCTGGTTaGTACCAACAGCACTTTCAGATTTACAAGGGCTGTGTGAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: FHVTLRTGLPLPIPG*YQQHFQIYKGCVRL Trigger: CAGCCTCACACAGCCCTTGTAAATCTGAAAGTGCTGTTGGTAGCAACCAGGGATGGGCAGAGGCAGCCCTGTCCTGAGGGTGACATGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456681.1 ENST00000663636.1 |
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| CDS GCA 90 bp | AGGCTTCAGGCCACGCATGCTTCCTTCATTCAAACTGGCACTCACTaGGGCACACCGGCCCTTTTTGAGCACCTTGGTTATCACCTCAGT | + |
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Preference number: 5 (lower is better) Translates to: RLQATHASFIQTGTH*GTPALFEHLGYHLS Trigger: ACTGAGGTGATAACCAAGGTGCTCAAAAAGGGCCGGTGTGCCGCAGTGAGTGCCAGTTTGAATGAAGGAAGCATGCGTGGCCTGAAGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000456681.1 ENST00000663636.1 ENST00000664226.1 |
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| CDS GCA 90 bp | CAGCTTGCTCTCACTTTCATGTCACCCTCAGGACAGGGCTGCCTCTaGCCATCCCTGGTTGCTACCAACAGCACTTTCAGATTTACAAGG | + |
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Preference number: 5 (lower is better) Translates to: QLALTFMSPSGQGCL*PSLVATNSTFRFTR Trigger: CCTTGTAAATCTGAAAGTGCTGTTGGTAGCAACCAGGGATGGGCAGAGGCAGCCCTGTCCTGAGGGTGACATGAAAGTGAGAGCAAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456681.1 ENST00000663636.1 |
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| CDS GCA 90 bp | GAGCTTCAGCTTGCTCTCACTTTCATGTCACCCTCAGGACAGGGCTaGCTCTGCCCATCCCTGGTTGCTACCAACAGCACTTTCAGATTT | + |
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Preference number: 5 (lower is better) Translates to: ELQLALTFMSPSGQG*LCPSLVATNSTFRF Trigger: AAATCTGAAAGTGCTGTTGGTAGCAACCAGGGATGGGCAGAGGCAGCCCTGTCCTGAGGGTGACATGAAAGTGAGAGCAAGCTGAAGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456681.1 ENST00000663636.1 |
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| CDS TCA 90 bp | TGTGATATTATGTGCAGAGCACTTAACTGGACGCCTGGAACACGGTaGGGCTTCAGGCCACGCATGCTTCCTTCATTCAAACTGGCACTC | + |
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Preference number: 5 (lower is better) Translates to: CDIMCRALNWTPGTR*GFRPRMLPSFKLAL Trigger: GAGTGCCAGTTTGAATGAAGGAAGCATGCGTGGCCTGAAGCCTCACCGTGTTCCAGGCGTCCAGTTAAGTGCTCTGCACATAATATCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000426969.5 ENST00000456681.1 ENST00000663636.1 ENST00000664226.1 |
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| CDS GCA 90 bp | TCTTTCTGTGGAGGATTGCTTTCCAGACCCTATGTTGTAATGCTGTaGCCAGGAAAAACACACGTTGCCTTTGGAGCAGCCTCAGGATGG | + |
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Preference number: 5 (lower is better) Translates to: SFCGGLLSRPYVVML*PGKTHVAFGAASGW Trigger: CCATCCTGAGGCTGCTCCAAAGGCAACGTGTGTTTTTCCTGGGCACAGCATTACAACATAGGGTCTGGAAAGCAATCCTCCACAGAAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663636.1 |
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| CDS TCA 90 bp | AGGATGGTGGGACCTTCATTACTCTGGCTTCCCAAGCAGCTGTGCTaGGCTGAGCCCATGCCATTTGACATATGTTTACTTGTATTTTCG | + |
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Preference number: 5 (lower is better) Translates to: RMVGPSLLWLPKQLC*AEPMPFDICLLVFS Trigger: CGAAAATACAAGTAAACATATGTCAAATGGCATGGGCTCAGCTCAGCACAGCTGCTTGGGAAGCCAGAGTAATGAAGGTCCCACCATCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663636.1 |
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| CDS GCA 90 bp | CTTCATTACTCTGGCTTCCCAAGCAGCTGTGCTGAGCTGAGCCCATaGCATTTGACATATGTTTACTTGTATTTTCGCTTCCAGCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: LHYSGFPSSCAELSP*HLTYVYLYFRFQPK Trigger: TTTGGGCTGGAAGCGAAAATACAAGTAAACATATGTCAAATGGCATGGGCTCAGCTCAGCACAGCTGCTTGGGAAGCCAGAGTAATGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663636.1 |
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| CDS GCA 90 bp | TGCTCAGAAATGCCCAGAAGATTCTGCTTTCTTTCTGTGGAGGATTaGTTTCCAGACCCTTATCGTGGAGCGCAATGTGTGATATTATGT | + |
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Preference number: 5 (lower is better) Translates to: CSEMPRRFCFLSVED*FPDPYRGAQCVILC Trigger: ACATAATATCACACATTGCGCTCCACGATAAGGGTCTGGAAAGCAATCCTCCACAGAAAGAAAGCAGAATCTTCTGGGCATTTCTGAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456681.1 |
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| CDS TCA 90 bp | AGATTCTGCTTTCTTTCTGTGGAGGATTGCTTTCCAGACCCCATTTaGCATATGTTTACTTGTATTTTCGCTTCCAGCCCAAATGTTACT | + |
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Preference number: 5 (lower is better) Translates to: RFCFLSVEDCFPDPI*HMFTCIFASSPNVT Trigger: AGTAACATTTGGGCTGGAAGCGAAAATACAAGTAAACATATGTCAAATGGGGTCTGGAAAGCAATCCTCCACAGAAAGAAAGCAGAATCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS TCA 90 bp | GGTGAATCATTAGAGACATTCCCATTAAGGGCAGAGACAGGAAAGTaGGGCTCACTATTACAAAAACTATTCAGAATTGTTCTAGAAGTT | + |
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Preference number: 5 (lower is better) Translates to: GESLETFPLRAETGK*GSLLQKLFRIVLEV Trigger: AACTTCTAGAACAATTCTGAATAGTTTTTGTAATAGTGAGCCTCACTTTCCTGTCTCTGCCCTTAATGGGAATGTCTCTAATGATTCACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000426969.5 ENST00000663636.1 |
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| CDS GCA 90 bp | AAACTGTCACAGCCCAGGAAAAACAAAGGAGACGTGATGAACAAATaGAACATGTTATCCAGATTGGAATCTGACACAGAAATAATAGAA | + |
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Preference number: 5 (lower is better) Translates to: KLSQPRKNKGDVMNK*NMLSRLESDTEIIE Trigger: TTCTATTATTTCTGTGTCAGATTCCAATCTGGATAACATGTTGCATTTGTTCATCACGTCTCCTTTGTTTTTCCTGGGCTGTGACAGTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS GCA 72 bp | TTCACAGTTCTGGTGGCTGGAAGTCCAAGGGCCAGGTaGTGGCAGGTTTGGCATCCGGTGAGGCCCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: FTVLVAGSPRAR*WQVWHPVRPCF Trigger: GAAGCAGGGCCTCACCGGATGCCAAACCTGCCAGCACCTGGCCCTTGGACTTCCAGCCACCAGAACTGTGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS CCA 72 bp | GTGGCTGGAAGTCCAAGGGCCAGGTGCTGGCAGGTTTaGCATCCGGTGAGGCCCTGCTTCCTGGTTCATAGA | + |
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Preference number: 6 (lower is better) Translates to: VAGSPRARCWQV*HPVRPCFLVHR Trigger: TCTATGAACCAGGAAGCAGGGCCTCACCGGATGCCAAACCTGCCAGCACCTGGCCCTTGGACTTCCAGCCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS GCA 72 bp | GGACGCCTGGAACACGGTGAGGCTTCAGGCCACGCATaGTTCCTTCATTCAAACTGGCACTCACTGCGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GRLEHGEASGHA*FLHSNWHSLRH Trigger: GTGCCGCAGTGAGTGCCAGTTTGAATGAAGGAAGCATGCGTGGCCTGAAGCCTCACCGTGTTCCAGGCGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000426969.5 ENST00000456681.1 ENST00000663636.1 ENST00000664226.1 |
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| CDS GCA 72 bp | GCCACGCATGCTTCCTTCATTCAAACTGGCACTCACTaGGGCACACCGGCCCTTTTTGAGCACCTCAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: ATHASFIQTGTH*GTPALFEHLSV Trigger: CACACTGAGGTGCTCAAAAAGGGCCGGTGTGCCGCAGTGAGTGCCAGTTTGAATGAAGGAAGCATGCGTGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS GCA 72 bp | CTTGCTCTCACTTTCATGTCACCCTCAGGACAGGGCTaGCTCTGCCCATCCCTGGTTGCTACCAACAGCACT | + |
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Preference number: 6 (lower is better) Translates to: LALTFMSPSGQG*LCPSLVATNST Trigger: AGTGCTGTTGGTAGCAACCAGGGATGGGCAGAGGCAGCCCTGTCCTGAGGGTGACATGAAAGTGAGAGCAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456681.1 ENST00000663636.1 |
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| CDS GCA 72 bp | AGAGGTGAGAGTGTGGGGGACTCAGCACGTCAGCTGTaGCCCTGGTCACTGGAGTTAGCTGACTTTCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: RGESVGDSARQL*PWSLELADFQK Trigger: CTTCTGAAAGTCAGCTAACTCCAGTGACCAGGGGCACAGCTGACGTGCTGAGTCCCCCACACTCTCACCTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664226.1 |
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| CDS CCA 72 bp | GAGAGTGTGGGGGACTCAGCACGTCAGCTGTGCCCCTaGTCACTGGAGTTAGCTGACTTTCAGAAGCACTGT | + |
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Preference number: 6 (lower is better) Translates to: ESVGDSARQLCP*SLELADFQKHC Trigger: ACAGTGCTTCTGAAAGTCAGCTAACTCCAGTGACCAGGGGCACAGCTGACGTGCTGAGTCCCCCACACTCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000664226.1 |
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| CDS TCA 72 bp | CTTGTCATTCCTTCTTCGTGGCGTTCTTTCCTGGTGTaGATCCCAGGCCACGGGAGCACAGAGGAGGAAGTG | + |
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Preference number: 6 (lower is better) Translates to: LVIPSSWRSFLV*IPGHGSTEEEV Trigger: CACTTCCTCCTCTGTGCTCCCGTGGCCTGGGATTCACACCAGGAAAGAACGCCACGAAGAAGGAATGACAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456681.1 ENST00000663636.1 |
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| CDS CCA 72 bp | CCTACCCCAGACCTCTGGAATCAGAAACTCTTGGAGTaGGAAACGGCAATCTGTGCATTAGCAGCCCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PTPDLWNQKLLE*ETAICALAAPR Trigger: CCTGGGGGCTGCTAATGCACAGATTGCCGTTTCCCACTCCAAGAGTTTCTGATTCCAGAGGTCTGGGGTAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000426969.5 ENST00000663636.1 |
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| CDS CAA 90 bp | CTTTCATGTCACCCTCAGGACAGGGCTGCCTCTGCCCATCCCTGGTaGCTACCAACAGCACTTTCAGATTTACAAGGGCTGTGTGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: LSCHPQDRAASAHPW*LPTALSDLQGLCEA Trigger: AGCCTCACACAGCCCTTGTAAATCTGAAAGTGCTGTTGGTAGCAACCAGGGATGGGCAGAGGCAGCCCTGTCCTGAGGGTGACATGAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456681.1 ENST00000663636.1 |
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| CDS CAA 90 bp | ACACACAGCAGCCTGCCATCCAGTCCAGAACCGTTCAGGACCAACTaGAAAAAGTGCCTGATTGCGGAAAGCAAGCCCCCAGCACATGCT | + |
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Preference number: 6 (lower is better) Translates to: THSSLPSSPEPFRTN*KKCLIAESKPPAHA Trigger: AGCATGTGCTGGGGGCTTGCTTTCCGCAATCAGGCACTTTTTCAAGTTGGTCCTGAACGGTTCTGGACTGGATGGCAGGCTGCTGTGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000663636.1 |
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| CDS TCA 72 bp | GTTGGCTTCCAACACTTTGCACCTGTCCGCTTCTCCTaGGGACTGTGCTCAGCTGAAGGAAGTCCACTTGCT | + |
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Preference number: 6 (lower is better) Translates to: VGFQHFAPVRFS*GLCSAEGSPLA Trigger: AGCAAGTGGACTTCCTTCAGCTGAGCACAGTCCTCAGGAGAAGCGGACAGGTGCAAAGTGTTGGAAGCCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426969.5 ENST00000456681.1 ENST00000663636.1 |
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| CDS GCA 72 bp | GCCACGCATGCTTCCTTCATTCAAACTGGCACTCACTaGGGCACACCGGCCCTTTTTGAGCACCTTGGTTAT | + |
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Preference number: 6 (lower is better) Translates to: ATHASFIQTGTH*GTPALFEHLGY Trigger: ATAACCAAGGTGCTCAAAAAGGGCCGGTGTGCCGCAGTGAGTGCCAGTTTGAATGAAGGAAGCATGCGTGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000456681.1 ENST00000663636.1 ENST00000664226.1 |
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| CDS CAA 72 bp | TTCAAACTGGCACTCACTGCGGCACACCGGCCCTTTTaGAGCACCTTGGTTATCACCTCAGTGTGTGTAGCC | + |
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Preference number: 6 (lower is better) Translates to: FKLALTAAHRPF*STLVITSVCVA Trigger: GGCTACACACACTGAGGTGATAACCAAGGTGCTCAAAAAGGGCCGGTGTGCCGCAGTGAGTGCCAGTTTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456681.1 ENST00000663636.1 ENST00000664226.1 |
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| CDS TCA 72 bp | ATGTGCAGAGCACTTAACTGGACGCCTGGAACACGGTaGGGCTTCAGGCCACGCATGCTTCCTTCATTCAAA | + |
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Preference number: 6 (lower is better) Translates to: MCRALNWTPGTR*GFRPRMLPSFK Trigger: TTTGAATGAAGGAAGCATGCGTGGCCTGAAGCCTCACCGTGTTCCAGGCGTCCAGTTAAGTGCTCTGCACAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000426969.5 ENST00000456681.1 ENST00000663636.1 ENST00000664226.1 |
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| CDS TCA 72 bp | TCCCAAATCAAGCCTGAGCTGATCTTGGATGAGGTTTaGAGAAGCCCATCCTGGAGAGGCTGGTGGGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: SQIKPELILDEV*RSPSWRGWWVP Trigger: TGGAACCCACCAGCCTCTCCAGGATGGGCTTCTTCAAACCTCATCCAAGATCAGCTCAGGCTTGATTTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664226.1 |
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| CDS GCA 72 bp | TCCAGTCCAGAACCGTTCAGGACCAACTTGAAAAAGTaGCTGATTGCGGAAAGCAAGCCCCCAGCACATGCT | + |
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Preference number: 6 (lower is better) Translates to: SSPEPFRTNLKK*LIAESKPPAHA Trigger: AGCATGTGCTGGGGGCTTGCTTTCCGCAATCAGGCACTTTTTCAAGTTGGTCCTGAACGGTTCTGGACTGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000663636.1 |
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| CDS CAA 90 bp | AACAAATTATCGAGCCCTACCCCAGACCTCTGGAATCAGAAACTCTaGGAGTGGGAAACGGCAATCTGTGCATTAGCAGCCCCCAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: NKLSSPTPDLWNQKL*EWETAICALAAPRE Trigger: CTCCCTGGGGGCTGCTAATGCACAGATTGCCGTTTCCCACTCCAAGAGTTTCTGATTCCAGAGGTCTGGGGTAGGGCTCGATAATTTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000426969.5 ENST00000663636.1 |
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| CDS TCA 72 bp | AAGGGAGGAACGGTCTCTCCCAAATCAAGCCTGAGCTaGTCTTGGATGAGGTTTGAAGAAGCCCATCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: KGGTVSPKSSLS*SWMRFEEAHPG Trigger: TCCAGGATGGGCTTCTTCAAACCTCATCCAAGATCAGCTCAGGCTTGATTTGGGAGAGACCGTTCCTCCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664226.1 |
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| CDS GCA 72 bp | GGAGGATTGCTTTCCAGACCCTATGTTGTAATGCTGTaGCCAGGAAAAACACACGTTGCCTTTGGAGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: GGLLSRPYVVML*PGKTHVAFGAA Trigger: GGCTGCTCCAAAGGCAACGTGTGTTTTTCCTGGGCACAGCATTACAACATAGGGTCTGGAAAGCAATCCTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663636.1 |
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| CDS CAA 90 bp | TGTCCTCACATGGTGGGAGAGGTTAAAGAGCTCCTTTTGCCTTATTaGATAAGGGCACTAATCCCATTCATGAGGGCTCCACCCTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: CPHMVGEVKELLLPY*IRALIPFMRAPPSW Trigger: CCAAGAGGGTGGAGCCCTCATGAATGGGATTAGTGCCCTTATCAAATAAGGCAAAAGGAGCTCTTTAACCTCTCCCACCATGTGAGGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS TCA 72 bp | GGACCTTCATTACTCTGGCTTCCCAAGCAGCTGTGCTaGGCTGAGCCCATGCCATTTGACATATGTTTACTT | + |
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Preference number: 6 (lower is better) Translates to: GPSLLWLPKQLC*AEPMPFDICLL Trigger: AAGTAAACATATGTCAAATGGCATGGGCTCAGCTCAGCACAGCTGCTTGGGAAGCCAGAGTAATGAAGGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663636.1 |
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| CDS GCA 72 bp | ATGCCCAGAAGATTCTGCTTTCTTTCTGTGGAGGATTaGTTTCCAGACCCTTATCGTGGAGCGCAATGTGTG | + |
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Preference number: 6 (lower is better) Translates to: MPRRFCFLSVED*FPDPYRGAQCV Trigger: CACACATTGCGCTCCACGATAAGGGTCTGGAAAGCAATCCTCCACAGAAAGAAAGCAGAATCTTCTGGGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456681.1 |
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| CDS CAA 90 bp | TACTCTGGCTTCCCAAGCAGCTGTGCTGAGCTGAGCCCATGCCATTaGACATATGTTTACTTGTATTTTCGCTTCCAGCCCAAATGTTAC | + |
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Preference number: 6 (lower is better) Translates to: YSGFPSSCAELSPCH*TYVYLYFRFQPKCY Trigger: GTAACATTTGGGCTGGAAGCGAAAATACAAGTAAACATATGTCAAATGGCATGGGCTCAGCTCAGCACAGCTGCTTGGGAAGCCAGAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663636.1 |
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| CDS GCA 72 bp | CTGTGCTCAGCTGAAGGAAGTCCACTTGCTCAGAAATaGCCAGAAGATTCTGCTTTCTTTCTGTGGAGGATT | + |
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Preference number: 6 (lower is better) Translates to: LCSAEGSPLAQK*PEDSAFFLWRI Trigger: AATCCTCCACAGAAAGAAAGCAGAATCTTCTGGGCATTTCTGAGCAAGTGGACTTCCTTCAGCTGAGCACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426969.5 ENST00000456681.1 ENST00000663636.1 |
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| CDS GCA 72 bp | TCTGGCTTCCCAAGCAGCTGTGCTGAGCTGAGCCCATaGCATTTGACATATGTTTACTTGTATTTTCGCTTC | + |
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Preference number: 6 (lower is better) Translates to: SGFPSSCAELSP*HLTYVYLYFRF Trigger: GAAGCGAAAATACAAGTAAACATATGTCAAATGGCATGGGCTCAGCTCAGCACAGCTGCTTGGGAAGCCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663636.1 |
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| CDS CAA 72 bp | AATGCCCAGAAGATTCTGCTTTCTTTCTGTGGAGGATaGCTTTCCAGACCCTTATCGTGGAGCGCAATGTGT | + |
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Preference number: 6 (lower is better) Translates to: NAQKILLSFCGG*LSRPLSWSAMC Trigger: ACACATTGCGCTCCACGATAAGGGTCTGGAAAGCAATCCTCCACAGAAAGAAAGCAGAATCTTCTGGGCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456681.1 |
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| CDS CCA 72 bp | TCTTTCTGTGGAGGATTGCTTTCCAGACCCTTATCGTaGAGCGCAATGTGTGATATTATGTGCAGAGCACTT | + |
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Preference number: 6 (lower is better) Translates to: SFCGGLLSRPLS*SAMCDIMCRAL Trigger: AAGTGCTCTGCACATAATATCACACATTGCGCTCCACGATAAGGGTCTGGAAAGCAATCCTCCACAGAAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456681.1 |
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| CDS CAA 72 bp | ATGGTGGGAGAGGTTAAAGAGCTCCTTTTGCCTTATTaGATAAGGGCACTAATCCCATTCATGAGGGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: MVGEVKELLLPY*IRALIPFMRAP Trigger: TGGAGCCCTCATGAATGGGATTAGTGCCCTTATCAAATAAGGCAAAAGGAGCTCTTTAACCTCTCCCACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS CAA 90 bp | TCCTGGGAACATCCATTACACTTTGCTCGGTTCCCATGTGAGAATTaGTTCTTATCGTGGAGCGCAATGTGTGATATTATGTGCAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: SWEHPLHFARFPCEN*FLSWSAMCDIMCRA Trigger: TGCTCTGCACATAATATCACACATTGCGCTCCACGATAAGAACAAATTCTCACATGGGAACCGAGCAAAGTGTAATGGATGTTCCCAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426969.5 ENST00000663636.1 ENST00000664226.1 |
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| CDS CAA 90 bp | TTTTCACTTTGTCCTCACATGGTGGGAGAGGTTAAAGAGCTCCTTTaGCCTTATTTGATAAGGGCACTAATCCCATTCATGAGGGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: FSLCPHMVGEVKELL*PYLIRALIPFMRAP Trigger: TGGAGCCCTCATGAATGGGATTAGTGCCCTTATCAAATAAGGCAAAAGGAGCTCTTTAACCTCTCCCACCATGTGAGGACAAAGTGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS CAA 90 bp | TTGCTCAGAAATGCCCAGAAGATTCTGCTTTCTTTCTGTGGAGGATaGCTTTCCAGACCCTTATCGTGGAGCGCAATGTGTGATATTATG | + |
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Preference number: 6 (lower is better) Translates to: LLRNAQKILLSFCGG*LSRPLSWSAMCDIM Trigger: CATAATATCACACATTGCGCTCCACGATAAGGGTCTGGAAAGCAATCCTCCACAGAAAGAAAGCAGAATCTTCTGGGCATTTCTGAGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456681.1 |
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| CDS CAA 72 bp | TGTCCTCACATGGTGGGAGAGGTTAAAGAGCTCCTTTaGCCTTATTTGATAAGGGCACTAATCCCATTCATG | + |
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Preference number: 6 (lower is better) Translates to: CPHMVGEVKELL*PYLIRALIPFM Trigger: CATGAATGGGATTAGTGCCCTTATCAAATAAGGCAAAAGGAGCTCTTTAACCTCTCCCACCATGTGAGGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS CCA 72 bp | TTTGCTCGGTTCCCATGTGAGAATTTGTTCTTATCGTaGAGCGCAATGTGTGATATTATGTGCAGAGCACTT | + |
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Preference number: 6 (lower is better) Translates to: FARFPCENLFLS*SAMCDIMCRAL Trigger: AAGTGCTCTGCACATAATATCACACATTGCGCTCCACGATAAGAACAAATTCTCACATGGGAACCGAGCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426969.5 ENST00000663636.1 ENST00000664226.1 |
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| CDS CAA 72 bp | CTTTCTTTCTGTGGAGGATTGCTTTCCAGACCCCATTaGACATATGTTTACTTGTATTTTCGCTTCCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: LSFCGGLLSRPH*TYVYLYFRFQP Trigger: GGGCTGGAAGCGAAAATACAAGTAAACATATGTCAAATGGGGTCTGGAAAGCAATCCTCCACAGAAAGAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS TCA 72 bp | TTTCTTTCTGTGGAGGATTGCTTTCCAGACCCCATTTaGCATATGTTTACTTGTATTTTCGCTTCCAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: FLSVEDCFPDPI*HMFTCIFASSP Trigger: TGGGCTGGAAGCGAAAATACAAGTAAACATATGTCAAATGGGGTCTGGAAAGCAATCCTCCACAGAAAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS CCA 72 bp | GTATGGTACCAATCCTCATTTCTTAGTTTTGACAAATaGACCACGGTTATGTTAACATTAGGGGAAGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: VWYQSSFLSFDK*TTVMLTLGEVG Trigger: CCCCACTTCCCCTAATGTTAACATAACCGTGGTCCATTTGTCAAAACTAAGAAATGAGGATTGGTACCATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS CAA 72 bp | CATCCATTACACTTTGCTCGGTTCCCATGTGAGAATTaGTTCTTATCGTGGAGCGCAATGTGTGATATTATG | + |
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Preference number: 6 (lower is better) Translates to: HPLHFARFPCEN*FLSWSAMCDIM Trigger: CATAATATCACACATTGCGCTCCACGATAAGAACAAATTCTCACATGGGAACCGAGCAAAGTGTAATGGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426969.5 ENST00000663636.1 ENST00000664226.1 |
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| CDS CAA 72 bp | AATGCCCAGAAGATTCTGCTTTCTTTCTGTGGAGGATaGCTTTCCAGACCCCATTTGACATATGTTTACTTG | + |
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Preference number: 6 (lower is better) Translates to: NAQKILLSFCGG*LSRPHLTYVYL Trigger: CAAGTAAACATATGTCAAATGGGGTCTGGAAAGCAATCCTCCACAGAAAGAAAGCAGAATCTTCTGGGCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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| CDS CAA 90 bp | TTCTGTGGAGGATTGCTTTCCAGACCCCATTTGACATATGTTTACTaGTATTTTCGCTTCCAGCCCAAATGTTACTCCTCTCATACAGTT | + |
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Preference number: 6 (lower is better) Translates to: FCGGLLSRPHLTYVY*YFRFQPKCYSSHTV Trigger: AACTGTATGAGAGGAGTAACATTTGGGCTGGAAGCGAAAATACAAGTAAACATATGTCAAATGGGGTCTGGAAAGCAATCCTCCACAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426969.5 |
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