Pregenerated sensors for LINC00294 (Homo sapiens)
Ensembl gene IDs: ENSG00000280798Ensembl transcript IDs: ENST00000631190.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCTTCTCTGCCCAGGAACCCAGGATCATACAACCGCCAGGCACAGTaGCCACAGAGCAGCCTCCACCTTAAGGGAACAATTCCAGACACG | + |
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Preference number: 5 (lower is better) Translates to: ASLPRNPGSYNRQAQ*PQSSLHLKGTIPDT Trigger: CGTGTCTGGAATTGTTCCCTTAAGGTGGAGGCTGCTCTGTGGCCACTGTGCCTGGCGGTTGTATGATCCTGGGTTCCTGGGCAGAGAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS TCA 90 bp | AGAGGACAGGAAGAAAACCTTCCCTGTAGGCCCGTAAAATGTGCTTaGATGAAGGGAGGTTGGGCGCTACCAGTGGAACGTAACACCACA | + |
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Preference number: 5 (lower is better) Translates to: RGQEENLPCRPVKCA*MKGGWALPVERNTT Trigger: TGTGGTGTTACGTTCCACTGGTAGCGCCCAACCTCCCTTCATTCAAGCACATTTTACGGGCCTACAGGGAAGGTTTTCTTCCTGTCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CCA 90 bp | GAGTGTTCCCATTTAACAATGAAAATGCCGAGGCCTTGGGGAGAATaGCTGGTCCAATGTTGTACAACCGGTAAGGCGGCGATAGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: ECSHLTMKMPRPWGE*LVQCCTTGKAAIEE Trigger: CTCCTCTATCGCCGCCTTACCGGTTGTACAACATTGGACCAGCCATTCTCCCCAAGGCCTCGGCATTTTCATTGTTAAATGGGAACACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS TCA 90 bp | GCTGTAGGGGAAGGTACAGGGGGATGCTTAGCAATGCTTCCTGAGTaGCTAAATGAACGAAGTGGATCTCCCTGGCCCTTAGTAATAATC | + |
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Preference number: 5 (lower is better) Translates to: AVGEGTGGCLAMLPE*LNERSGSPWPLVII Trigger: GATTATTACTAAGGGCCAGGGAGATCCACTTCGTTCATTTAGTCACTCAGGAAGCATTGCTAAGCATCCCCCTGTACCTTCCCCTACAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CCA 90 bp | CACCTTAAGGGAACAATTCCAGACACGACCTCATTGAATACACCATaGAAGATGTTATCTTCTTTAAAAGTACCCTCATGGCAGGGCGCA | + |
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Preference number: 5 (lower is better) Translates to: HLKGTIPDTTSLNTP*KMLSSLKVPSWQGA Trigger: TGCGCCCTGCCATGAGGGTACTTTTAAAGAAGATAACATCTTCCATGGTGTATTCAATGAGGTCGTGTCTGGAATTGTTCCCTTAAGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CCA 90 bp | CCAGTTATTCATGCATCAAGATTTCAAACGGTCCAAATGGAACTCTaGCAATGTAAGAACTCAGGAGGGGAAAAATATCTTGCAAGAATC | + |
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Preference number: 5 (lower is better) Translates to: PVIHASRFQTVQMEL*QCKNSGGEKYLARI Trigger: GATTCTTGCAAGATATTTTTCCCCTCCTGAGTTCTTACATTGCCAGAGTTCCATTTGGACCGTTTGAAATCTTGATGCATGAATAACTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CCA 72 bp | CCCAGGAACCCAGGATCATACAACCGCCAGGCACAGTaGCCACAGAGCAGCCTCCACCTTAAGGGAACAATT | + |
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Preference number: 6 (lower is better) Translates to: PRNPGSYNRQAQ*PQSSLHLKGTI Trigger: AATTGTTCCCTTAAGGTGGAGGCTGCTCTGTGGCCACTGTGCCTGGCGGTTGTATGATCCTGGGTTCCTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CCA 72 bp | TGGGCCCTGATTTGCCCCAGCTGGTACATAACAGAGTaGAGATCCAAGCCTTGGTTTCCTGACAGCTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: WALICPSWYITE*RSKPWFPDSSQ Trigger: CTGGGAGCTGTCAGGAAACCAAGGCTTGGATCTCCACTCTGTTATGTACCAGCTGGGGCAAATCAGGGCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS TCA 72 bp | GTACATAACAGAGTGGAGATCCAAGCCTTGGTTTCCTaGCAGCTCCCAGTCTTTCCACTCTACCACCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: VHNRVEIQALVS*QLPVFPLYHLA Trigger: GGCCAGGTGGTAGAGTGGAAAGACTGGGAGCTGTCAGGAAACCAAGGCTTGGATCTCCACTCTGTTATGTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS TCA 72 bp | GAAGAAAACCTTCCCTGTAGGCCCGTAAAATGTGCTTaGATGAAGGGAGGTTGGGCGCTACCAGTGGAACGT | + |
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Preference number: 6 (lower is better) Translates to: EENLPCRPVKCA*MKGGWALPVER Trigger: ACGTTCCACTGGTAGCGCCCAACCTCCCTTCATTCAAGCACATTTTACGGGCCTACAGGGAAGGTTTTCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CCA 72 bp | CATTTAACAATGAAAATGCCGAGGCCTTGGGGAGAATaGCTGGTCCAATGTTGTACAACCGGTAAGGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: HLTMKMPRPWGE*LVQCCTTGKAA Trigger: CGCCGCCTTACCGGTTGTACAACATTGGACCAGCCATTCTCCCCAAGGCCTCGGCATTTTCATTGTTAAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CAA 90 bp | ATTGTGGTTCTGAAGTTTGCTTCCTTCATTCTTGACTTTTGCCAGTaGCAGAACTCCACCAGTGGACACCGAGGTAGTGGGCGGCCAAGA | + |
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Preference number: 6 (lower is better) Translates to: IVVLKFASFILDFCQ*QNSTSGHRGSGRPR Trigger: TCTTGGCCGCCCACTACCTCGGTGTCCACTGGTGGAGTTCTGCAACTGGCAAAAGTCAAGAATGAAGGAAGCAAACTTCAGAACCACAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS TCA 72 bp | GAAGGTACAGGGGGATGCTTAGCAATGCTTCCTGAGTaGCTAAATGAACGAAGTGGATCTCCCTGGCCCTTA | + |
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Preference number: 6 (lower is better) Translates to: EGTGGCLAMLPE*LNERSGSPWPL Trigger: TAAGGGCCAGGGAGATCCACTTCGTTCATTTAGTCACTCAGGAAGCATTGCTAAGCATCCCCCTGTACCTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CAA 72 bp | GGAGTGTTCCCATTTAACAATGAAAATGCCGAGGCCTaGGGGAGAATGGCTGGTCCAATGTTGTACAACCGG | + |
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Preference number: 6 (lower is better) Translates to: GVFPFNNENAEA*GRMAGPMLYNR Trigger: CCGGTTGTACAACATTGGACCAGCCATTCTCCCCAAGGCCTCGGCATTTTCATTGTTAAATGGGAACACTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CCA 72 bp | GAGTGTTCCCATTTAACAATGAAAATGCCGAGGCCTTaGGGAGAATGGCTGGTCCAATGTTGTACAACCGGT | + |
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Preference number: 6 (lower is better) Translates to: ECSHLTMKMPRP*GEWLVQCCTTG Trigger: ACCGGTTGTACAACATTGGACCAGCCATTCTCCCCAAGGCCTCGGCATTTTCATTGTTAAATGGGAACACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS GCA 72 bp | AGTGGGCGGCCAAGAGTCTGTGAAGCCAGTTATTCATaGATCAAGATTTCAAACGGTCCAAATGGAACTCTG | + |
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Preference number: 6 (lower is better) Translates to: SGRPRVCEASYS*IKISNGPNGTL Trigger: CAGAGTTCCATTTGGACCGTTTGAAATCTTGATGCATGAATAACTGGCTTCACAGACTCTTGGCCGCCCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CAA 72 bp | TTAAAGACCAAGTCTAGTCCTTTCATTTTAAAGGAGTaGGGAATGGGCCCTGATTTGCCCCAGCTGGTACAT | + |
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Preference number: 6 (lower is better) Translates to: LKTKSSPFILKE*GMGPDLPQLVH Trigger: ATGTACCAGCTGGGGCAAATCAGGGCCCATTCCCAACTCCTTTAAAATGAAAGGACTAGACTTGGTCTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CAA 90 bp | CAGAGCAGCCTCCACCTTAAGGGAACAATTCCAGACACGACCTCATaGAATACACCATGGAAGATGTTATCTTCTTTAAAAGTACCCTCA | + |
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Preference number: 6 (lower is better) Translates to: QSSLHLKGTIPDTTS*NTPWKMLSSLKVPS Trigger: TGAGGGTACTTTTAAAGAAGATAACATCTTCCATGGTGTATTCAATGAGGTCGTGTCTGGAATTGTTCCCTTAAGGTGGAGGCTGCTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS TCA 72 bp | TTTCAGGAAAAGACACTTGTCTCCACAACCTGTTACTaGATGCAGCATATAGAATCCATTCGATTCTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: FQEKTLVSTTCY*MQHIESIRFWR Trigger: CCTCCAGAATCGAATGGATTCTATATGCTGCATTCAGTAACAGGTTGTGGAGACAAGTGTCTTTTCCTGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS GCA 72 bp | CTAAAACCCAGATCTTTCTCTAAATTAGGAGCTTTGTaGACAATCCTGCTACCACCAAATGTTAGAATCGGA | + |
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Preference number: 6 (lower is better) Translates to: LKPRSFSKLGAL*TILLPPNVRIG Trigger: TCCGATTCTAACATTTGGTGGTAGCAGGATTGTGCACAAAGCTCCTAATTTAGAGAAAGATCTGGGTTTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CCA 72 bp | GGAACAATTCCAGACACGACCTCATTGAATACACCATaGAAGATGTTATCTTCTTTAAAAGTACCCTCATGG | + |
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Preference number: 6 (lower is better) Translates to: GTIPDTTSLNTP*KMLSSLKVPSW Trigger: CCATGAGGGTACTTTTAAAGAAGATAACATCTTCCATGGTGTATTCAATGAGGTCGTGTCTGGAATTGTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CCA 72 bp | CATGCATCAAGATTTCAAACGGTCCAAATGGAACTCTaGCAATGTAAGAACTCAGGAGGGGAAAAATATCTT | + |
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Preference number: 6 (lower is better) Translates to: HASRFQTVQMEL*QCKNSGGEKYL Trigger: AAGATATTTTTCCCCTCCTGAGTTCTTACATTGCCAGAGTTCCATTTGGACCGTTTGAAATCTTGATGCATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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| CDS CAA 72 bp | CTCCACCTTAAGGGAACAATTCCAGACACGACCTCATaGAATACACCATGGAAGATGTTATCTTCTTTAAAA | + |
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Preference number: 6 (lower is better) Translates to: LHLKGTIPDTTS*NTPWKMLSSLK Trigger: TTTTAAAGAAGATAACATCTTCCATGGTGTATTCAATGAGGTCGTGTCTGGAATTGTTCCCTTAAGGTGGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000631190.1 |
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