Pregenerated sensors for LINC00279 (Homo sapiens)
Ensembl gene IDs: ENSG00000286217Ensembl transcript IDs: ENST00000650816.1, ENST00000651793.1, ENST00000652539.1, ENST00000657784.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCTGGACCCTGCCTCACATTGTGCTGTTGGCAGGTAATACATCACTaGACCACCGTTCTGGCAAGGGCGCTACGATGTGTAGGCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: AGPCLTLCCWQVIHH*TTVLARALRCVGRP Trigger: AGGCCTGCCTACACATCGTAGCGCCCTTGCCAGAACGGTGGTGCAGTGATGTATTACCTGCCAACAGCACAATGTGAGGCAGGGTCCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651793.1 |
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| CDS CCA 90 bp | TGTATGCTGGGCAGAACGGCTGGACCCTGCCTCACATTGTGCTGTTaGCAGGTAATACATCACTGCACCACCGTTCTGGCAAGGGCGCTA | + |
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Preference number: 5 (lower is better) Translates to: CMLGRTAGPCLTLCC*QVIHHCTTVLARAL Trigger: TAGCGCCCTTGCCAGAACGGTGGTGCAGTGATGTATTACCTGCCAACAGCACAATGTGAGGCAGGGTCCAGCCGTTCTGCCCAGCATACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651793.1 |
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| CDS CCA 90 bp | TGTATGCTGGGCAGAACGGCTGGACCCTGCCTCACATTGTGCTGTTaGCAGGTAATACATCACTGCACCACCGTTCTGGCAAGGGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: CMLGRTAGPCLTLCC*QVIHHCTTVLARAE Trigger: TTCAGCCCTTGCCAGAACGGTGGTGCAGTGATGTATTACCTGCCAACAGCACAATGTGAGGCAGGGTCCAGCCGTTCTGCCCAGCATACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652539.1 |
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| CDS CCA 90 bp | CCACACATGATCACTCCACACTTTGGCATTCCTGTGAAGTCCACCTaGAGGTCTTCAAAAGGGGCTGCTCCCTCAAGTTGTATGCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: PHMITPHFGIPVKST*RSSKGAAPSSCMLG Trigger: GCCCAGCATACAACTTGAGGGAGCAGCCCCTTTTGAAGACCTCCAGGTGGACTTCACAGGAATGCCAAAGTGTGGAGTGATCATGTGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000651793.1 ENST00000652539.1 |
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| CDS CCA 90 bp | GAATCCTTCTATTTTCATGCTGTGAGAGTCGTCAAAATGATGGTCTaGGGTCCTTCCCACCGTAGTTGTGGGTGGGCTACATTCCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: ESFYFHAVRVVKMMV*GPSHRSCGWATFQS Trigger: GGACTGGAATGTAGCCCACCCACAACTACGGTGGGAAGGACCCCAGACCATCATTTTGACGACTCTCACAGCATGAAAATAGAAGGATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000651793.1 ENST00000652539.1 |
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| CDS GCA 72 bp | TCCTGTGAAGTCCACCTGGAGGTCTTCAAAAGGGGCTaGTCCCTCAAGTTGTATGCTGGGCAGAACGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SCEVHLEVFKRG*SLKLYAGQNGW Trigger: CCAGCCGTTCTGCCCAGCATACAACTTGAGGGAGCAGCCCCTTTTGAAGACCTCCAGGTGGACTTCACAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000651793.1 ENST00000652539.1 |
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| CDS CCA 72 bp | GGCAGAACGGCTGGACCCTGCCTCACATTGTGCTGTTaGCAGGTAATACATCACTGCACCACCGTTCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: GRTAGPCLTLCC*QVIHHCTTVLA Trigger: TGCCAGAACGGTGGTGCAGTGATGTATTACCTGCCAACAGCACAATGTGAGGCAGGGTCCAGCCGTTCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000651793.1 ENST00000652539.1 |
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| CDS GCA 72 bp | ATGCTGGGCAGAACGGCTGGACCCTGCCTCACATTGTaGTGTTGGCAGGTAATACATCACTGCACCACCGTT | + |
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Preference number: 6 (lower is better) Translates to: MLGRTAGPCLTL*CWQVIHHCTTV Trigger: AACGGTGGTGCAGTGATGTATTACCTGCCAACAGCACAATGTGAGGCAGGGTCCAGCCGTTCTGCCCAGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000651793.1 ENST00000652539.1 |
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| CDS CAA 72 bp | TGTATGCTGGGCAGAACGGCTGGACCCTGCCTCACATaGTGCTGTTGGCAGGTAATACATCACTGCACCACC | + |
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Preference number: 6 (lower is better) Translates to: CMLGRTAGPCLT*CCWQVIHHCTT Trigger: GGTGGTGCAGTGATGTATTACCTGCCAACAGCACAATGTGAGGCAGGGTCCAGCCGTTCTGCCCAGCATACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000651793.1 ENST00000652539.1 |
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| CDS CAA 90 bp | CTGGTTGTGACTGTAGCAGGGCTTGCCATCTTTCTCAATGTCACTTaGCAGGGGTCCACCAGGCTCAGTCTCACCTCTCAGGTCTCAGAC | + |
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Preference number: 6 (lower is better) Translates to: LVVTVAGLAIFLNVT*QGSTRLSLTSQVSD Trigger: GTCTGAGACCTGAGAGGTGAGACTGAGCCTGGTGGACCCCTGCAAAGTGACATTGAGAAAGATGGCAAGCCCTGCTACAGTCACAACCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000651793.1 ENST00000652539.1 |
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| CDS CAA 72 bp | ACTGTAGCAGGGCTTGCCATCTTTCTCAATGTCACTTaGCAGGGGTCCACCAGGCTCAGTCTCACCTCTCAG | + |
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Preference number: 6 (lower is better) Translates to: TVAGLAIFLNVT*QGSTRLSLTSQ Trigger: CTGAGAGGTGAGACTGAGCCTGGTGGACCCCTGCAAAGTGACATTGAGAAAGATGGCAAGCCCTGCTACAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000651793.1 ENST00000652539.1 |
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| CDS GCA 72 bp | TGCCTCACATTGTGCTGTTGGCAGGTAATACATCACTaGACCACCGTTCTGGCAAGGGCTGAAGTCTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: CLTLCCWQVIHH*TTVLARAEVSC Trigger: ACAAGAGACTTCAGCCCTTGCCAGAACGGTGGTGCAGTGATGTATTACCTGCCAACAGCACAATGTGAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652539.1 |
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| CDS CCA 72 bp | TATTTTCATGCTGTGAGAGTCGTCAAAATGATGGTCTaGGGTCCTTCCCACCGTAGTTGTGGGTGGGCTACA | + |
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Preference number: 6 (lower is better) Translates to: YFHAVRVVKMMV*GPSHRSCGWAT Trigger: TGTAGCCCACCCACAACTACGGTGGGAAGGACCCCAGACCATCATTTTGACGACTCTCACAGCATGAAAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000651793.1 ENST00000652539.1 |
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| CDS TCA 72 bp | GCTCAGTCTCACCTCTCAGGTCTCAGACAATGTAGATaGTACATGACTGTGATTGATCCAGGCTGGGAATCC | + |
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Preference number: 6 (lower is better) Translates to: AQSHLSGLRQCR*YMTVIDPGWES Trigger: GGATTCCCAGCCTGGATCAATCACAGTCATGTATCATCTACATTGTCTGAGACCTGAGAGGTGAGACTGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000651793.1 ENST00000652539.1 |
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| CDS TCA 72 bp | GGAATAATGCAGCCCTCTGAAATCCCATTTGCTCCCTaGATTCCATGGCAGCCAAAGATGTTTAATGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: GIMQPSEIPFAP*IPWQPKMFNER Trigger: CCTCTCATTAAACATCTTTGGCTGCCATGGAATTCAGGGAGCAAATGGGATTTCAGAGGGCTGCATTATTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652539.1 |
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| CDS GCA 72 bp | AGATTTATGATCCACCTCAAACTTGTCTCTGACGTGTaGAGAAGAGATGGACATAGTGTTGCAGAAGCCATC | + |
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Preference number: 6 (lower is better) Translates to: RFMIHLKLVSDV*RRDGHSVAEAI Trigger: GATGGCTTCTGCAACACTATGTCCATCTCTTCTGCACACGTCAGAGACAAGTTTGAGGTGGATCATAAATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657784.1 |
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| CDS TCA 72 bp | CAAATACAACACTGGATAAAAATGTTGGAAGGCCAGTaGCAGCAGAGAAGCTCACTTGCACTTTACATATCT | + |
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Preference number: 6 (lower is better) Translates to: QIQHWIKMLEGQ*QQRSSLALYIS Trigger: AGATATGTAAAGTGCAAGTGAGCTTCTCTGCTGTCACTGGCCTTCCAACATTTTTATCCAGTGTTGTATTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650816.1 |
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| CDS CAA 90 bp | GCTAGCCAGTCTATCTCACACAAAGTTCTAAGTTTTGCTGGTTTCTaGAAATTTTTCAGCATAGTTTCTAACGGAGTGGGCTTACTTTAT | + |
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Preference number: 6 (lower is better) Translates to: ASQSISHKVLSFAGF*KFFSIVSNGVGLLY Trigger: ATAAAGTAAGCCCACTCCGTTAGAAACTATGCTGAAAAATTTCAAGAAACCAGCAAAACTTAGAACTTTGTGTGAGATAGACTGGCTAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650816.1 |
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