Pregenerated sensors for LINC00239 (Homo sapiens)
Ensembl gene IDs: ENSG00000258512Ensembl transcript IDs: ENST00000556973.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGGAGGTTCTCCTTGCAGGGGAGCGGCTGCTGCCAACATCCCAGCTaGTACCTGTCCCTTGCTTCACACTTTCCTCTTCCACACCCGGCC | + |
|
Preference number: 5 (lower is better) Translates to: GRFSLQGSGCCQHPS*YLSLASHFPLPHPA Trigger: GGCCGGGTGTGGAAGAGGAAAGTGTGAAGCAAGGGACAGGTACCAGCTGGGATGTTGGCAGCAGCCGCTCCCCTGCAAGGAGAACCTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS TCA 90 bp | GTCAAGGATGATGCAATGGCGCTCCAGGAACAATATCAGGCTCTGTaGCTTGGGTGCCTTCTGGGTGTGTGGCGTGGTCTCGGTCTGACA | + |
|
Preference number: 5 (lower is better) Translates to: VKDDAMALQEQYQAL*LGCLLGVWRGLGLT Trigger: TGTCAGACCGAGACCACGCCACACACCCAGAAGGCACCCAAGTCACAGAGCCTGATATTGTTCCTGGAGCGCCATTGCATCATCCTTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS GCA 90 bp | GGTGTGTGGCGTGGTCTCGGTCTGACAATCTCTAGAACAACCATCTaGTGGATGCAAAGTCCGAGGTCTTCCTGTAGCATGACCGTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: GVWRGLGLTISRTTI*WMQSPRSSCSMTVF Trigger: GAAGACGGTCATGCTACAGGAAGACCTCGGACTTTGCATCCAGCAGATGGTTGTTCTAGAGATTGTCAGACCGAGACCACGCCACACACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CCA 90 bp | GTGTGGCGTGGTCTCGGTCTGACAATCTCTAGAACAACCATCTGCTaGATGCAAAGTCCGAGGTCTTCCTGTAGCATGACCGTCTTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: VWRGLGLTISRTTIC*MQSPRSSCSMTVFL Trigger: CAGGAAGACGGTCATGCTACAGGAAGACCTCGGACTTTGCATCCAGCAGATGGTTGTTCTAGAGATTGTCAGACCGAGACCACGCCACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS TCA 90 bp | GTACCTGTCCCTTGCTTCACACTTTCCTCTTCCACACCCGGCCTGTaGCTCATGCCTGAAACGCCTCCGTTCAAGCAATTCTTCCTTTTA | + |
|
Preference number: 5 (lower is better) Translates to: VPVPCFTLSSSTPGL*LMPETPPFKQFFLL Trigger: TAAAAGGAAGAATTGCTTGAACGGAGGCGTTTCAGGCATGAGTCACAGGCCGGGTGTGGAAGAGGAAAGTGTGAAGCAAGGGACAGGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CCA 90 bp | GAGACAAATCCAATGACGCAGATCTTGTGGTCAAGGATGATGCAATaGCGCTCCAGGAACAATATCAGGCTCTGTGACTTGGGTGCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: ETNPMTQILWSRMMQ*RSRNNIRLCDLGAF Trigger: GAAGGCACCCAAGTCACAGAGCCTGATATTGTTCCTGGAGCGCCATTGCATCATCCTTGACCACAAGATCTGCGTCATTGGATTTGTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CCA 90 bp | CCAGAGTCCCAAGTTTTTGAGACAAATCCAATGACGCAGATCTTGTaGTCAAGGATGATGCAATGGCGCTCCAGGAACAATATCAGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: PESQVFETNPMTQIL*SRMMQWRSRNNIRL Trigger: GAGCCTGATATTGTTCCTGGAGCGCCATTGCATCATCCTTGACCACAAGATCTGCGTCATTGGATTTGTCTCAAAAACTTGGGACTCTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS TCA 90 bp | ATTATTTTGATCCCAGTACCCATTAGAAACACAGTGTCTAAATATTaGAATGCTTTGCTTCAAAAGCTGCTAAGATACAGTGGCAAAGGT | + |
|
Preference number: 5 (lower is better) Translates to: IILIPVPIRNTVSKY*NALLQKLLRYSGKG Trigger: ACCTTTGCCACTGTATCTTAGCAGCTTTTGAAGCAAAGCATTTCAATATTTAGACACTGTGTTTCTAATGGGTACTGGGATCAAAATAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS GCA 72 bp | GGCAGGTGTGCGGGACAGGAAGTGGGAGGTTCTCCTTaGAGGGGAGCGGCTGCTGCCAACATCCCAGCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: GRCAGQEVGGSP*RGAAAANIPAG Trigger: ACCAGCTGGGATGTTGGCAGCAGCCGCTCCCCTGCAAGGAGAACCTCCCACTTCCTGTCCCGCACACCTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CAA 72 bp | AGGCAGGTGTGCGGGACAGGAAGTGGGAGGTTCTCCTaGCAGGGGAGCGGCTGCTGCCAACATCCCAGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: RQVCGTGSGRFS*QGSGCCQHPSW Trigger: CCAGCTGGGATGTTGGCAGCAGCCGCTCCCCTGCAAGGAGAACCTCCCACTTCCTGTCCCGCACACCTGCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CAA 90 bp | TGCAGGGGAGCGGCTGCTGCCAACATCCCAGCTGGTACCTGTCCCTaGCTTCACACTTTCCTCTTCCACACCCGGCCTGTGACTCATGCC | + |
|
Preference number: 6 (lower is better) Translates to: CRGAAAANIPAGTCP*LHTFLFHTRPVTHA Trigger: GGCATGAGTCACAGGCCGGGTGTGGAAGAGGAAAGTGTGAAGCAAGGGACAGGTACCAGCTGGGATGTTGGCAGCAGCCGCTCCCCTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CAA 72 bp | GCGGCTGCTGCCAACATCCCAGCTGGTACCTGTCCCTaGCTTCACACTTTCCTCTTCCACACCCGGCCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: AAAANIPAGTCP*LHTFLFHTRPV Trigger: CACAGGCCGGGTGTGGAAGAGGAAAGTGTGAAGCAAGGGACAGGTACCAGCTGGGATGTTGGCAGCAGCCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CCA 72 bp | TCCTTGCAGGGGAGCGGCTGCTGCCAACATCCCAGCTaGTACCTGTCCCTTGCTTCACACTTTCCTCTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: SLQGSGCCQHPS*YLSLASHFPLP Trigger: TGGAAGAGGAAAGTGTGAAGCAAGGGACAGGTACCAGCTGGGATGTTGGCAGCAGCCGCTCCCCTGCAAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CAA 72 bp | CAATGGCGCTCCAGGAACAATATCAGGCTCTGTGACTaGGGTGCCTTCTGGGTGTGTGGCGTGGTCTCGGTC | + |
|
Preference number: 6 (lower is better) Translates to: QWRSRNNIRLCD*GAFWVCGVVSV Trigger: GACCGAGACCACGCCACACACCCAGAAGGCACCCAAGTCACAGAGCCTGATATTGTTCCTGGAGCGCCATTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS TCA 72 bp | GATGCAATGGCGCTCCAGGAACAATATCAGGCTCTGTaGCTTGGGTGCCTTCTGGGTGTGTGGCGTGGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: DAMALQEQYQAL*LGCLLGVWRGL Trigger: GAGACCACGCCACACACCCAGAAGGCACCCAAGTCACAGAGCCTGATATTGTTCCTGGAGCGCCATTGCATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CCA 72 bp | TGTGATGAGAAACATCAGGCTGCCGAGGCCAAACAGTaGGTGCGTCACTTTCCAATGAGGCAGGTGTGCGGG | + |
|
Preference number: 6 (lower is better) Translates to: CDEKHQAAEAKQ*VRHFPMRQVCG Trigger: CCCGCACACCTGCCTCATTGGAAAGTGACGCACCCACTGTTTGGCCTCGGCAGCCTGATGTTTCTCATCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CCA 72 bp | AATGGCGCTCCAGGAACAATATCAGGCTCTGTGACTTaGGTGCCTTCTGGGTGTGTGGCGTGGTCTCGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: NGAPGTISGSVT*VPSGCVAWSRS Trigger: AGACCGAGACCACGCCACACACCCAGAAGGCACCCAAGTCACAGAGCCTGATATTGTTCCTGGAGCGCCATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS TCA 72 bp | CCTTGCTTCACACTTTCCTCTTCCACACCCGGCCTGTaGCTCATGCCTGAAACGCCTCCGTTCAAGCAATTC | + |
|
Preference number: 6 (lower is better) Translates to: PCFTLSSSTPGL*LMPETPPFKQF Trigger: GAATTGCTTGAACGGAGGCGTTTCAGGCATGAGTCACAGGCCGGGTGTGGAAGAGGAAAGTGTGAAGCAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS TCA 72 bp | TTGGGTGCCTTCTGGGTGTGTGGCGTGGTCTCGGTCTaGCAATCTCTAGAACAACCATCTGCTGGATGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: LGAFWVCGVVSV*QSLEQPSAGCK Trigger: TTTGCATCCAGCAGATGGTTGTTCTAGAGATTGTCAGACCGAGACCACGCCACACACCCAGAAGGCACCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CCA 72 bp | GGTCTCGGTCTGACAATCTCTAGAACAACCATCTGCTaGATGCAAAGTCCGAGGTCTTCCTGTAGCATGACC | + |
|
Preference number: 6 (lower is better) Translates to: GLGLTISRTTIC*MQSPRSSCSMT Trigger: GGTCATGCTACAGGAAGACCTCGGACTTTGCATCCAGCAGATGGTTGTTCTAGAGATTGTCAGACCGAGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CAA 90 bp | TCTCCAGAGTCCCAAGTTTTTGAGACAAATCCAATGACGCAGATCTaGTGGTCAAGGATGATGCAATGGCGCTCCAGGAACAATATCAGG | + |
|
Preference number: 6 (lower is better) Translates to: SPESQVFETNPMTQI*WSRMMQWRSRNNIR Trigger: CCTGATATTGTTCCTGGAGCGCCATTGCATCATCCTTGACCACAAGATCTGCGTCATTGGATTTGTCTCAAAAACTTGGGACTCTGGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CAA 72 bp | TCCCAAGTTTTTGAGACAAATCCAATGACGCAGATCTaGTGGTCAAGGATGATGCAATGGCGCTCCAGGAAC | + |
|
Preference number: 6 (lower is better) Translates to: SQVFETNPMTQI*WSRMMQWRSRN Trigger: GTTCCTGGAGCGCCATTGCATCATCCTTGACCACAAGATCTGCGTCATTGGATTTGTCTCAAAAACTTGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||
| CDS CCA 72 bp | CAAGTTTTTGAGACAAATCCAATGACGCAGATCTTGTaGTCAAGGATGATGCAATGGCGCTCCAGGAACAAT | + |
|
Preference number: 6 (lower is better) Translates to: QVFETNPMTQIL*SRMMQWRSRNN Trigger: ATTGTTCCTGGAGCGCCATTGCATCATCCTTGACCACAAGATCTGCGTCATTGGATTTGTCTCAAAAACTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000556973.1 |
||