Pregenerated sensors for LINC00208 (Homo sapiens)
Ensembl gene IDs: ENSG00000170983Ensembl transcript IDs: ENST00000304233.3, ENST00000652958.1, ENST00000653131.1, ENST00000655780.1, ENST00000661938.1
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCACCTACCTACGCGTGGCTTCCTCGACAGAACGCAGCTGTCGCCTaGGGGCTCGTCCAGCCACGTGGGAGGGAACTTGTCCAAGACCAC | + |
|
Preference number: 5 (lower is better) Translates to: SPTYAWLPRQNAAVA*GLVQPRGRELVQDH Trigger: GTGGTCTTGGACAAGTTCCCTCCCACGTGGCTGGACGAGCCCTCAGGCGACAGCTGCGTTCTGTCGAGGAAGCCACGCGTAGGTAGGTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS TCA 90 bp | GAGCTGAGTCTGCTGTGGCTTCCTCGACAGAACGCAGCTGTCGCCTaGGGGCTCGTCCAGCCACGTGGGAGGGAACTTGTCCAAGACCAC | + |
|
Preference number: 5 (lower is better) Translates to: ELSLLWLPRQNAAVA*GLVQPRGRELVQDH Trigger: GTGGTCTTGGACAAGTTCCCTCCCACGTGGCTGGACGAGCCCTCAGGCGACAGCTGCGTTCTGTCGAGGAAGCCACAGCAGACTCAGCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655780.1 |
||
| CDS CCA 90 bp | TCCTCGACAGAACGCAGCTGTCGCCTGAGGGCTCGTCCAGCCACGTaGGAGGGAACTTGTCCAAGACCACAAATGGCCTTCCCAGGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: SSTERSCRLRARPAT*EGTCPRPQMAFPGW Trigger: CCACCCTGGGAAGGCCATTTGTGGTCTTGGACAAGTTCCCTCCCACGTGGCTGGACGAGCCCTCAGGCGACAGCTGCGTTCTGTCGAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000304233.3 ENST00000655780.1 ENST00000661938.1 |
||
| CDS CCA 90 bp | GGGCTCGTCCAGCCACGTGGGAGGGAACTTGTCCAAGACCACAAATaGCCTTCCCAGGGTGGGGTGGCGGTGGTTGTAGTAACTCCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: GLVQPRGRELVQDHK*PSQGGVAVVVVTPE Trigger: CTCAGGAGTTACTACAACCACCGCCACCCCACCCTGGGAAGGCCATTTGTGGTCTTGGACAAGTTCCCTCCCACGTGGCTGGACGAGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000304233.3 ENST00000655780.1 ENST00000661938.1 |
||
| CDS TCA 90 bp | AACAACATGACTCCTCAAGGTCTCTGCAACTTGGGGCATCAGAGCTaGGTCTGCTCGTGTGCCAGGCACCGCCTCGGACCCAGGGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: NNMTPQGLCNLGHQS*VCSCARHRLGPRGL Trigger: GAGTCCCCTGGGTCCGAGGCGGTGCCTGGCACACGAGCAGACTCAGCTCTGATGCCCCAAGTTGCAGAGACCTTGAGGAGTCATGTTGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000661938.1 |
||
| CDS TCA 90 bp | CAAATGGCCTTCCCAGGGTGGGGTGGCGGTGGTTGTAGTAACTCCTaGGTTCCCACCCTTGTCCCAGGAAGGCTGGGCACAATTGCAGTT | + |
|
Preference number: 5 (lower is better) Translates to: QMAFPGWGGGGCSNS*VPTLVPGRLGTIAV Trigger: AACTGCAATTGTGCCCAGCCTTCCTGGGACAAGGGTGGGAACTCAGGAGTTACTACAACCACCGCCACCCCACCCTGGGAAGGCCATTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000304233.3 ENST00000655780.1 ENST00000661938.1 |
||
| CDS TCA 90 bp | AGAACCCTTAAATCCTACAGTATGCCAAGTCCTTTCTCACGTGGCTaGCTCTGTCCCTGCAAAGTGCTCTCCAGGGCCAGCTGTGCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: RTLKSYSMPSPFSRG*LCPCKVLSRASCAG Trigger: CCCAGCACAGCTGGCCCTGGAGAGCACTTTGCAGGGACAGAGTCAGCCACGTGAGAAAGGACTTGGCATACTGTAGGATTTAAGGGTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS TCA 90 bp | TACCTTCCCACAGCATTATCATGCCATCCGGTGAAAGGATCTAAGTaGAGTGTCTCCCTCCAGGCCTGCACTCAGTGCCGGGTAAGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: YLPTALSCHPVKGSK*SVSLQACTQCRVSL Trigger: CAGACTTACCCGGCACTGAGTGCAGGCCTGGAGGGAGACACTTCACTTAGATCCTTTCACCGGATGGCATGATAATGCTGTGGGAAGGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS TCA 90 bp | GTTTCTGAATTCTGCAAACTCGCTAGACTAGCCGTGGTGAGTATGTaGAACCCAGCTTCTGATCGCTCAGTGGGAGACTTTCCAGACCCC | + |
|
Preference number: 5 (lower is better) Translates to: VSEFCKLARLAVVSM*NPASDRSVGDFPDP Trigger: GGGGTCTGGAAAGTCTCCCACTGAGCGATCAGAAGCTGGGTTTCACATACTCACCACGGCTAGTCTAGCGAGTTTGCAGAATTCAGAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS TCA 90 bp | GGTTTCCTCATCTGTACCTTCCCACAGCATTATCATGCCATCCGGTaGAAGGATCTAAGTGAAGTGTCTCCCTCCAGGCCTGCACTCAGT | + |
|
Preference number: 5 (lower is better) Translates to: GFLICTFPQHYHAIR*KDLSEVSPSRPALS Trigger: ACTGAGTGCAGGCCTGGAGGGAGACACTTCACTTAGATCCTTTCACCGGATGGCATGATAATGCTGTGGGAAGGTACAGATGAGGAAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS TCA 90 bp | GGCAGCAAATATCGATCCTGCAGTGGAGATTCTTATGAGCAGTTCTaGCCAAGAAGAGGAGATCAAAACCTCCTCCACACATCCAGATGG | + |
|
Preference number: 5 (lower is better) Translates to: GSKYRSCSGDSYEQF*PRRGDQNLLHTSRW Trigger: CCATCTGGATGTGTGGAGGAGGTTTTGATCTCCTCTTCTTGGTCAGAACTGCTCATAAGAATCTCCACTGCAGGATCGATATTTGCTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS GCA 90 bp | GGTCCAACCTCATACTTGAGAGGTCCACATTGGCCCAACAGAATTTaGTGGGAAGCCCTGATTAGAACCCTTAAATCCTACAGTATGCCA | + |
|
Preference number: 5 (lower is better) Translates to: GPTSYLRGPHWPNRI*WEALIRTLKSYSMP Trigger: TGGCATACTGTAGGATTTAAGGGTTCTAATCAGGGCTTCCCAGCAAATTCTGTTGGGCCAATGTGGACCTCTCAAGTATGAGGTTGGACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS CCA 90 bp | CCAACCTCATACTTGAGAGGTCCACATTGGCCCAACAGAATTTGCTaGGAAGCCCTGATTAGAACCCTTAAATCCTACAGTATGCCAAGT | + |
|
Preference number: 5 (lower is better) Translates to: PTSYLRGPHWPNRIC*EALIRTLKSYSMPS Trigger: ACTTGGCATACTGTAGGATTTAAGGGTTCTAATCAGGGCTTCCCAGCAAATTCTGTTGGGCCAATGTGGACCTCTCAAGTATGAGGTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS TCA 90 bp | GAAAAGAAATGGCAGCAAATATCGATCCTGCAGTGGAGATTCTTATaGGCAGTTCTGACCAAGAAGAGGAGATCAAAACCTCCTCCACAC | + |
|
Preference number: 5 (lower is better) Translates to: EKKWQQISILQWRFL*AVLTKKRRSKPPPH Trigger: GTGTGGAGGAGGTTTTGATCTCCTCTTCTTGGTCAGAACTGCTCATAAGAATCTCCACTGCAGGATCGATATTTGCTGCCATTTCTTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS CCA 90 bp | ATTGCAGTTTTATATGGTCCAACCTCATACTTGAGAGGTCCACATTaGCCCAACAGAATTTGCTGGGAAGCCCTGATTAGAACCCTTAAA | + |
|
Preference number: 5 (lower is better) Translates to: IAVLYGPTSYLRGPH*PNRICWEALIRTLK Trigger: TTTAAGGGTTCTAATCAGGGCTTCCCAGCAAATTCTGTTGGGCCAATGTGGACCTCTCAAGTATGAGGTTGGACCATATAAAACTGCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS GCA 90 bp | TCTCCATTTGCATTGGTTTGGCGAATTCTATTTCCTCAAAGAGTGTaGCAGAGAAACTCCACGTTGCTTTTTCAGAGTTATAGACAAAGT | + |
|
Preference number: 5 (lower is better) Translates to: SPFALVWRILFPQRV*QRNSTLLFQSYRQS Trigger: ACTTTGTCTATAACTCTGAAAAAGCAACGTGGAGTTTCTCTGGCACACTCTTTGAGGAAATAGAATTCGCCAAACCAATGCAAATGGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000304233.3 ENST00000652958.1 ENST00000653131.1 ENST00000655780.1 ENST00000661938.1 |
||
| CDS GCA 90 bp | GGACTAATACAGATTGCTTCTACATTTGGCTATTGTGAGTCATGCTaGTATGAACATGGGTGTACAACCAACATTAATTTTACTTTAACA | + |
|
Preference number: 5 (lower is better) Translates to: GLIQIASTFGYCESC*YEHGCTTNINFTLT Trigger: TGTTAAAGTAAAATTAATGTTGGTTGTACACCCATGTTCATAGCAGCATGACTCACAATAGCCAAATGTAGAAGCAATCTGTATTAGTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS CAA 90 bp | ACGCAGCTGTCGCCTGAGGGCTCGTCCAGCCACGTGGGAGGGAACTaGTCCAAGACCACAAATGGCCTTCCCAGGGTGGGGTGGCGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: TQLSPEGSSSHVGGN*SKTTNGLPRVGWRW Trigger: CCACCGCCACCCCACCCTGGGAAGGCCATTTGTGGTCTTGGACAAGTTCCCTCCCACGTGGCTGGACGAGCCCTCAGGCGACAGCTGCGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000304233.3 ENST00000655780.1 ENST00000661938.1 |
||
| CDS TCA 72 bp | TACGCGTGGCTTCCTCGACAGAACGCAGCTGTCGCCTaGGGGCTCGTCCAGCCACGTGGGAGGGAACTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: YAWLPRQNAAVA*GLVQPRGRELV Trigger: GACAAGTTCCCTCCCACGTGGCTGGACGAGCCCTCAGGCGACAGCTGCGTTCTGTCGAGGAAGCCACGCGTA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS TCA 72 bp | CTGCTGTGGCTTCCTCGACAGAACGCAGCTGTCGCCTaGGGGCTCGTCCAGCCACGTGGGAGGGAACTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: LLWLPRQNAAVA*GLVQPRGRELV Trigger: GACAAGTTCCCTCCCACGTGGCTGGACGAGCCCTCAGGCGACAGCTGCGTTCTGTCGAGGAAGCCACAGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655780.1 |
||
| CDS TCA 72 bp | CATGGGTGGCTTCCTCGACAGAACGCAGCTGTCGCCTaGGGGCTCGTCCAGCCACGTGGGAGGGAACTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: HGWLPRQNAAVA*GLVQPRGRELV Trigger: GACAAGTTCCCTCCCACGTGGCTGGACGAGCCCTCAGGCGACAGCTGCGTTCTGTCGAGGAAGCCACCCATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661938.1 |
||
| CDS CAA 72 bp | TCGCCTGAGGGCTCGTCCAGCCACGTGGGAGGGAACTaGTCCAAGACCACAAATGGCCTTCCCAGGGTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: SPEGSSSHVGGN*SKTTNGLPRVG Trigger: CCCCACCCTGGGAAGGCCATTTGTGGTCTTGGACAAGTTCCCTCCCACGTGGCTGGACGAGCCCTCAGGCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000304233.3 ENST00000655780.1 ENST00000661938.1 |
||
| CDS TCA 72 bp | ACTCCTCAAGGTCTCTGCAACTTGGGGCATCAGAGCTaGGTCTGCTCGTGTGCCAGGCACCGCCTCGGACCC | + |
|
Preference number: 6 (lower is better) Translates to: TPQGLCNLGHQS*VCSCARHRLGP Trigger: GGGTCCGAGGCGGTGCCTGGCACACGAGCAGACTCAGCTCTGATGCCCCAAGTTGCAGAGACCTTGAGGAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661938.1 |
||
| CDS TCA 72 bp | TTCCCAGGGTGGGGTGGCGGTGGTTGTAGTAACTCCTaGGTTCCCACCCTTGTCCCAGGAAGGCTGGGCACA | + |
|
Preference number: 6 (lower is better) Translates to: FPGWGGGGCSNS*VPTLVPGRLGT Trigger: TGTGCCCAGCCTTCCTGGGACAAGGGTGGGAACTCAGGAGTTACTACAACCACCGCCACCCCACCCTGGGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000304233.3 ENST00000655780.1 ENST00000661938.1 |
||
| CDS CCA 72 bp | GAACGCAGCTGTCGCCTGAGGGCTCGTCCAGCCACGTaGGAGGGAACTTGTCCAAGACCACAAATGGCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: ERSCRLRARPAT*EGTCPRPQMAF Trigger: GAAGGCCATTTGTGGTCTTGGACAAGTTCCCTCCCACGTGGCTGGACGAGCCCTCAGGCGACAGCTGCGTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000304233.3 ENST00000655780.1 ENST00000661938.1 |
||
| CDS CCA 72 bp | CAGCCACGTGGGAGGGAACTTGTCCAAGACCACAAATaGCCTTCCCAGGGTGGGGTGGCGGTGGTTGTAGTA | + |
|
Preference number: 6 (lower is better) Translates to: QPRGRELVQDHK*PSQGGVAVVVV Trigger: TACTACAACCACCGCCACCCCACCCTGGGAAGGCCATTTGTGGTCTTGGACAAGTTCCCTCCCACGTGGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000304233.3 ENST00000655780.1 ENST00000661938.1 |
||
| CDS CAA 90 bp | CCTCCAGGCCTGCACTCAGTGCCGGGTAAGTCTGTGGGGAGTGAGTaGGAATCACCGAGAACCCAGTTCAGCTCAGAAAGTCTGCCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: PPGLHSVPGKSVGSE*ESPRTQFSSESLPW Trigger: CCAGGGCAGACTTTCTGAGCTGAACTGGGTTCTCGGTGATTCCAACTCACTCCCCACAGACTTACCCGGCACTGAGTGCAGGCCTGGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652958.1 |
||
| CDS CCA 72 bp | TCCCTCCAGGCCTGCACTCAGTGCCGGGTAAGTCTGTaGGGAGTGAGTTGGAATCACCGAGAACCCAGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: SLQACTQCRVSL*GVSWNHREPSS Trigger: TGAACTGGGTTCTCGGTGATTCCAACTCACTCCCCACAGACTTACCCGGCACTGAGTGCAGGCCTGGAGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652958.1 |
||
| CDS CAA 90 bp | CAGGGTGGGGTGGCGGTGGTTGTAGTAACTCCTGAGTTCCCACCCTaGTCCCAGGAAGGCTGGGCACAATTGCAGTTCAGCTCAAGAAAC | + |
|
Preference number: 6 (lower is better) Translates to: QGGVAVVVVTPEFPP*SQEGWAQLQFSSRN Trigger: GTTTCTTGAGCTGAACTGCAATTGTGCCCAGCCTTCCTGGGACAAGGGTGGGAACTCAGGAGTTACTACAACCACCGCCACCCCACCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000304233.3 ENST00000655780.1 ENST00000661938.1 |
||
| CDS TCA 72 bp | GCACTCATCACTTCTAGGGGGAGGAGGAGGCATCCCTaGATTGCATGTCACGTGTCAGCAAAGGGGCCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: ALITSRGRRRHP*IACHVSAKGPN Trigger: GTTGGGCCCCTTTGCTGACACGTGACATGCAATTCAGGGATGCCTCCTCCTCCCCCTAGAAGTGATGAGTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS CAA 72 bp | GAGGAGATCAAAACCTCCTCCACACATCCAGATGGGTaGCCTCCTCCTTCTATGGGCCTGGAGGCAGGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: EEIKTSSTHPDG*PPPSMGLEAGA Trigger: TGCTCCTGCCTCCAGGCCCATAGAAGGAGGAGGCAACCCATCTGGATGTGTGGAGGAGGTTTTGATCTCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS CCA 72 bp | AGAAGAGGAGATCAAAACCTCCTCCACACATCCAGATaGGTTGCCTCCTCCTTCTATGGGCCTGGAGGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RRGDQNLLHTSR*VASSFYGPGGR Trigger: CCTGCCTCCAGGCCCATAGAAGGAGGAGGCAACCCATCTGGATGTGTGGAGGAGGTTTTGATCTCCTCTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS CAA 90 bp | GACCAAGAAGAGGAGATCAAAACCTCCTCCACACATCCAGATGGGTaGCCTCCTCCTTCTATGGGCCTGGAGGCAGGAGCATGGGCATTA | + |
|
Preference number: 6 (lower is better) Translates to: DQEEEIKTSSTHPDG*PPPSMGLEAGAWAL Trigger: TAATGCCCATGCTCCTGCCTCCAGGCCCATAGAAGGAGGAGGCAACCCATCTGGATGTGTGGAGGAGGTTTTGATCTCCTCTTCTTGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS TCA 72 bp | ACAGCATTATCATGCCATCCGGTGAAAGGATCTAAGTaGAGTGTCTCCCTCCAGGCCTGCACTCAGTGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: TALSCHPVKGSK*SVSLQACTQCR Trigger: CCGGCACTGAGTGCAGGCCTGGAGGGAGACACTTCACTTAGATCCTTTCACCGGATGGCATGATAATGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS CAA 72 bp | CTGCACTCAGTGCCGGGTAAGTCTGTGGGGAGTGAGTaGGAATCACCGAGAACCCAGTTCAGCTCAGAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: LHSVPGKSVGSE*ESPRTQFSSES Trigger: ACTTTCTGAGCTGAACTGGGTTCTCGGTGATTCCAACTCACTCCCCACAGACTTACCCGGCACTGAGTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652958.1 |
||
| CDS CAA 90 bp | GTGAAGCACAAAGTGAACCGATCTCGGGCTCTCCTCCCACCTCACTaGGTGAGGCCAGGTGAGCATGTTTTAAAAAGTGAGCTGATGGGG | + |
|
Preference number: 6 (lower is better) Translates to: VKHKVNRSRALLPPH*VRPGEHVLKSELMG Trigger: CCCCATCAGCTCACTTTTTAAAACATGCTCACCTGGCCTCACCAAGTGAGGTGGGAGGAGAGCCCGAGATCGGTTCACTTTGTGCTTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS CAA 72 bp | TCATCACTTCTAGGGGGAGGAGGAGGCATCCCTGAATaGCATGTCACGTGTCAGCAAAGGGGCCCAACTATA | + |
|
Preference number: 6 (lower is better) Translates to: SSLLGGGGGIPE*HVTCQQRGPTI Trigger: TATAGTTGGGCCCCTTTGCTGACACGTGACATGCAATTCAGGGATGCCTCCTCCTCCCCCTAGAAGTGATGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS CCA 72 bp | CTGTTTCCTTCCTTCCTGCAGAGACTGTCCCATAAGTaGACAGCCAGGCTAATGAAAGGCAAACCTCAGGGT | + |
|
Preference number: 6 (lower is better) Translates to: LFPSFLQRLSHK*TARLMKGKPQG Trigger: ACCCTGAGGTTTGCCTTTCATTAGCCTGGCTGTCCACTTATGGGACAGTCTCTGCAGGAAGGAAGGAAACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS CCA 72 bp | AAGGACGCTGGACTGGAGGTCAAAAGCCTTGTGACCTaGAGCAATTCACGCAACTTCCATGAGCCTTGGTTT | + |
|
Preference number: 6 (lower is better) Translates to: KDAGLEVKSLVT*SNSRNFHEPWF Trigger: AAACCAAGGCTCATGGAAGTTGCGTGAATTGCTCCAGGTCACAAGGCTTTTGACCTCCAGTCCAGCGTCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS CAA 72 bp | CAGAGAATTTCAGTAACTTGCCAGAAATCACAGAGGTaGAGCCCAGGCAGAGACCAGTCTGCACACCTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: QRISVTCQKSQR*SPGRDQSAHLQ Trigger: CTGGAGGTGTGCAGACTGGTCTCTGCCTGGGCTCAACCTCTGTGATTTCTGGCAAGTTACTGAAATTCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000304233.3 ENST00000653131.1 ENST00000655780.1 ENST00000661938.1 |
||
| CDS CAA 72 bp | AAAGTGAACCGATCTCGGGCTCTCCTCCCACCTCACTaGGTGAGGCCAGGTGAGCATGTTTTAAAAAGTGAG | + |
|
Preference number: 6 (lower is better) Translates to: KVNRSRALLPPH*VRPGEHVLKSE Trigger: CTCACTTTTTAAAACATGCTCACCTGGCCTCACCAAGTGAGGTGGGAGGAGAGCCCGAGATCGGTTCACTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS TCA 72 bp | TTCTGCAAACTCGCTAGACTAGCCGTGGTGAGTATGTaGAACCCAGCTTCTGATCGCTCAGTGGGAGACTTT | + |
|
Preference number: 6 (lower is better) Translates to: FCKLARLAVVSM*NPASDRSVGDF Trigger: AAAGTCTCCCACTGAGCGATCAGAAGCTGGGTTTCACATACTCACCACGGCTAGTCTAGCGAGTTTGCAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS TCA 72 bp | ATCTGTACCTTCCCACAGCATTATCATGCCATCCGGTaGAAGGATCTAAGTGAAGTGTCTCCCTCCAGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: ICTFPQHYHAIR*KDLSEVSPSRP Trigger: AGGCCTGGAGGGAGACACTTCACTTAGATCCTTTCACCGGATGGCATGATAATGCTGTGGGAAGGTACAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS GCA 72 bp | AGTTCCCACCCTTGTCCCAGGAAGGCTGGGCACAATTaGAGTTCAGCTCAAGAAACAAAGCATAGCATCCTT | + |
|
Preference number: 6 (lower is better) Translates to: SSHPCPRKAGHN*SSAQETKHSIL Trigger: AAGGATGCTATGCTTTGTTTCTTGAGCTGAACTGCAATTGTGCCCAGCCTTCCTGGGACAAGGGTGGGAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000304233.3 ENST00000655780.1 ENST00000661938.1 |
||
| CDS TCA 72 bp | GTCCACATTGGCCCAACAGAATTTGCTGGGAAGCCCTaGTTAGAACCCTTAAATCCTACAGTATGCCAAGTC | + |
|
Preference number: 6 (lower is better) Translates to: VHIGPTEFAGKP*LEPLNPTVCQV Trigger: GACTTGGCATACTGTAGGATTTAAGGGTTCTAATCAGGGCTTCCCAGCAAATTCTGTTGGGCCAATGTGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS TCA 72 bp | TATCGATCCTGCAGTGGAGATTCTTATGAGCAGTTCTaGCCAAGAAGAGGAGATCAAAACCTCCTCCACACA | + |
|
Preference number: 6 (lower is better) Translates to: YRSCSGDSYEQF*PRRGDQNLLHT Trigger: TGTGTGGAGGAGGTTTTGATCTCCTCTTCTTGGTCAGAACTGCTCATAAGAATCTCCACTGCAGGATCGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS CCA 72 bp | TACTTGAGAGGTCCACATTGGCCCAACAGAATTTGCTaGGAAGCCCTGATTAGAACCCTTAAATCCTACAGT | + |
|
Preference number: 6 (lower is better) Translates to: YLRGPHWPNRIC*EALIRTLKSYS Trigger: ACTGTAGGATTTAAGGGTTCTAATCAGGGCTTCCCAGCAAATTCTGTTGGGCCAATGTGGACCTCTCAAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS CCA 72 bp | TTATATGGTCCAACCTCATACTTGAGAGGTCCACATTaGCCCAACAGAATTTGCTGGGAAGCCCTGATTAGA | + |
|
Preference number: 6 (lower is better) Translates to: LYGPTSYLRGPH*PNRICWEALIR Trigger: TCTAATCAGGGCTTCCCAGCAAATTCTGTTGGGCCAATGTGGACCTCTCAAGTATGAGGTTGGACCATATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS CAA 72 bp | TCATGTTGCCATCCTAGCATCTCTGGTCACCTCTGTTaGCTGCTTACTCTAGAATGTGTGTGCAGAGGAAAA | + |
|
Preference number: 6 (lower is better) Translates to: SCCHPSISGHLC*LLTLECVCRGK Trigger: TTTTCCTCTGCACACACATTCTAGAGTAAGCAGCAAACAGAGGTGACCAGAGATGCTAGGATGGCAACATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000304233.3 |
||
| CDS CAA 72 bp | TACAGAATTGCAGTTTTATATGGTCCAACCTCATACTaGAGAGGTCCACATTGGCCCAACAGAATTTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: YRIAVLYGPTSY*RGPHWPNRICW Trigger: CCAGCAAATTCTGTTGGGCCAATGTGGACCTCTCAAGTATGAGGTTGGACCATATAAAACTGCAATTCTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652958.1 ENST00000653131.1 |
||
| CDS CAA 90 bp | TGGCGAATTCTATTTCCTCAAAGAGTGTGCCAGAGAAACTCCACGTaGCTTTTTCAGAGTTATAGACAAAGTTGGAAGAGACCTAACAGG | + |
|
Preference number: 6 (lower is better) Translates to: WRILFPQRVCQRNST*LFQSYRQSWKRPNR Trigger: CCTGTTAGGTCTCTTCCAACTTTGTCTATAACTCTGAAAAAGCAACGTGGAGTTTCTCTGGCACACTCTTTGAGGAAATAGAATTCGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000304233.3 ENST00000652958.1 ENST00000653131.1 ENST00000655780.1 ENST00000661938.1 |
||
| CDS GCA 72 bp | GCATTGGTTTGGCGAATTCTATTTCCTCAAAGAGTGTaGCAGAGAAACTCCACGTTGCTTTTTCAGAGTTAT | + |
|
Preference number: 6 (lower is better) Translates to: ALVWRILFPQRV*QRNSTLLFQSY Trigger: ATAACTCTGAAAAAGCAACGTGGAGTTTCTCTGGCACACTCTTTGAGGAAATAGAATTCGCCAAACCAATGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000304233.3 ENST00000652958.1 ENST00000653131.1 ENST00000655780.1 ENST00000661938.1 |
||
| CDS CCA 72 bp | AACTCCACGTTGCTTTTTCAGAGTTATAGACAAAGTTaGAAGAGACCTAACAGGGCTTCTAACCTTTCCTGT | + |
|
Preference number: 6 (lower is better) Translates to: NSTLLFQSYRQS*KRPNRASNLSC Trigger: ACAGGAAAGGTTAGAAGCCCTGTTAGGTCTCTTCCAACTTTGTCTATAACTCTGAAAAAGCAACGTGGAGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000304233.3 ENST00000652958.1 ENST00000653131.1 ENST00000655780.1 ENST00000661938.1 |
||