RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LAMTOR1 (Homo sapiens)

Ensembl gene IDs: ENSG00000149357

Ensembl transcript IDs: ENST00000278671.10, ENST00000535107.5, ENST00000535872.1, ENST00000538404.1, ENST00000539797.5, ENST00000541403.1, ENST00000544594.5, ENST00000545249.5

Found 215 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGGATGAAGAGAGGAGAAGAGCTGTCCAAGGACCCCTCTCTTCATaGGATCCCAAACTGTACAACCAGCTCCTCTTTTGCGTCCACACG +
Preference number: 1 (lower is better)
Translates to: WDEERRRAVQGPLSS*DPKLYNQLLFCVHT
Trigger: CGTGTGGACGCAAAAGAGGAGCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCCTTGGACAGCTCTTCTCCTCTCTTCATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR GCA 90 bp CCCCTCTCTTCATGGGATCCCAAACTGTACAACCAGCTCCTCTTTTaGGTCCACACGGATCTGAGAAAGTGCACTGTAGGCATAAGCAGC +
Preference number: 1 (lower is better)
Translates to: PLSSWDPKLYNQLLF*VHTDLRKCTVGISS
Trigger: GCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000535872.1
ENST00000538404.1
3UTR GCA 90 bp CTGTACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTaGACTGTAGGCATAAGCAGCTATCCTGGAGACCTGCTGCAAATC +
Preference number: 1 (lower is better)
Translates to: LYNQLLFCVHTDLRK*TVGISSYPGDLLQI
Trigger: GATTTGCAGCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535872.1
3UTR GCA 90 bp CTGTACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTaGACTGTAGGCATAAGCAGCTATCCTGGAGACCTGAGACAGAGA +
Preference number: 1 (lower is better)
Translates to: LYNQLLFCVHTDLRK*TVGISSYPGDLRQR
Trigger: TCTCTGTCTCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538404.1
3UTR CCA 90 bp TCTAGTCCAAGATCCCTAAGAGGGGAAAGGAGCTGGAGCATGACTTaGACACTATTCCCCTGGTGTGGTGATCTCAATTTAACCAGTATT +
Preference number: 1 (lower is better)
Translates to: SSPRSLRGERSWSMT*TLFPWCGDLNLTSI
Trigger: AATACTGGTTAAATTGAGATCACCACACCAGGGGAATAGTGTCCAAGTCATGCTCCAGCTCCTTTCCCCTCTTAGGGATCTTGGACTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
3UTR CCA 90 bp AGCAGGTCTTTCTGTGCTCATGACAGGGTTCTATTATTTGTATCTTaGCTTCATTTCTTCTGGTCAGGCACAGAGCAGCAAGCACTCAAC +
Preference number: 1 (lower is better)
Translates to: SRSFCAHDRVLLFVS*LHFFWSGTEQQALN
Trigger: GTTGAGTGCTTGCTGCTCTGTGCCTGACCAGAAGAAATGAAGCCAAGATACAAATAATAGAACCCTGTCATGAGCACAGAAAGACCTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
3UTR GCA 90 bp AAAGCTTCTTATGTGCCTAGCATGATGCTCTGTCTTCCTGTTGCTTaGTGTGATAGAATCGTAGATCACCAAAGCTGGAAAGGTCTTCAG +
Preference number: 1 (lower is better)
Translates to: KASYVPSMMLCLPVA*CDRIVDHQSWKGLQ
Trigger: CTGAAGACCTTTCCAGCTTTGGTGATCTACGATTCTATCACAGCAAGCAACAGGAAGACAGAGCATCATGCTAGGCACATAAGAAGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535107.5
3UTR TCA 90 bp GGAAAAGAAAGGCTTTATAGAAGAGGCTACACTAGAACTGAGTGTTaGAACATGAGAGAGTATTCACTAAGTGGGCAGCTGTTACTTGGA +
Preference number: 1 (lower is better)
Translates to: GKERLYRRGYTRTEC*NMREYSLSGQLLLG
Trigger: TCCAAGTAACAGCTGCCCACTTAGTGAATACTCTCTCATGTTTCAACACTCAGTTCTAGTGTAGCCTCTTCTATAAAGCCTTTCTTTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545249.5
3UTR-3UTR CCA 90 bp GCCAACAGAGAGGGTGGGAAGGGGATCTCCCTAGGTCCCCTGGTGATCACCCCCTGGGGGCCAAGGGGGTaGGGTAGAGATGGGATGAAG +
Preference number: 2 (lower is better)
Translates to: ANREGGKGISLGPLVITPWGPRG*GRDGMK
Trigger: CTTCATCCCATCTCTACCCCACCCCCTTGGCCCCCA...GGGGGTGATCACCAGGGGACCTAGGGAGATCCCCTTCCCACCCTCTCTGTTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CCA 90 bp GAGGCCAACAGAGAGGGTGGGAAGGGGATCTCCCTAGGTCCCCTGGTGATCACCCCCCCACCCCATCCCTaGCCAGAGCTTCAAAGGCCA +
Preference number: 2 (lower is better)
Translates to: EANREGGKGISLGPLVITPPPHP*PELQRP
Trigger: TGGCCTTTGAAGCTCTGGCCAGGGATGGGGTGGGGG...GGTGATCACCAGGGGACCTAGGGAGATCCCCTTCCCACCCTCTCTGTTGGCCTC
63% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR TCA 90 bp CCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCCTGTATAAGCCGCAGTaGGGCTGGGGGCCAAGGGGG +
Preference number: 2 (lower is better)
Translates to: PELQRPVPKGSTLTCSGFLYKPQ*GWGPRG
Trigger: CCCCCTTGGCCCCCAGCCTCACTGCGGCTTATACAG...GAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CCA 90 bp GAGGCCAACAGAGAGGGTGGGAAGGGGATCTCCCTAGGTCCCCTGGTGATCACCGGACCCCTCTCTTCATaGGATCCCAAACTGTACAAC +
Preference number: 2 (lower is better)
Translates to: EANREGGKGISLGPLVITGPLSS*DPKLYN
Trigger: GTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCC...GGTGATCACCAGGGGACCTAGGGAGATCCCCTTCCCACCCTCTCTGTTGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CCA 90 bp GCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCGAGGTGGGAGGGAGCTaGGGCCTACAAGGCTACCAG +
Preference number: 2 (lower is better)
Translates to: ASKASPKRFYPHLLRLLAEVGGS*GLQGYQ
Trigger: CTGGTAGCCTTGTAGGCCCCAGCTCCCTCCCACCTC...GGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538404.1
3UTR-3UTR TCA 90 bp TTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCTGTATAAGCCGCAGTaGGGCTGGGGGCCAAGGGGG +
Preference number: 2 (lower is better)
Translates to: FKGQSQKVLPSLAQASSLLYKPQ*GWGPRG
Trigger: CCCCCTTGGCCCCCAGCCTCACTGCGGCTTATACAG...AAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR TCA 90 bp AAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCCTGTATAAGCCGCAGTaGGGCTGGGGGCCAAGGGGG +
Preference number: 2 (lower is better)
Translates to: KRFYPHLLRLLAFLFSSFLYKPQ*GWGPRG
Trigger: CCCCCTTGGCCCCCAGCCTCACTGCGGCTTATACAG...GAAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CCA 90 bp GCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTGGGGGCCAAGGGGGTaGGGTAGAGATGGGATGAAG +
Preference number: 2 (lower is better)
Translates to: ASPKRFYPHLLRLLAFLFWGPRG*GRDGMK
Trigger: CTTCATCCCATCTCTACCCCACCCCCTTGGCCCCCA...GAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CCA 90 bp GGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTGGCCAGCACTTGGTaGGGCTGGCTGGTAAGAGAC +
Preference number: 2 (lower is better)
Translates to: GQSQKVLPSLAQASSLPLLASTW*GWLVRD
Trigger: GTCTCTTACCAGCCAGCCCCACCAAGTGCTGGCCAG...AAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535872.1
3UTR-3UTR CCA 90 bp GTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGCTGCAAATCAGAGAACGAGCACTTGGTGGGGCTaGCTGGTAAGAGACGGCAGC +
Preference number: 2 (lower is better)
Translates to: VHCRHKQLSWRPAANQRTSTWWG*LVRDGS
Trigger: GCTGCCGTCTCTTACCAGCCAGCCCCACCAAGTGCT...CGTTCTCTGATTTGCAGCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535872.1
3UTR-3UTR CCA 90 bp AAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCAAGAGACGGCAGCGGTaGCAGCTTCTTCCAATGGGT +
Preference number: 2 (lower is better)
Translates to: KASPKRFYPHLLRLLAFLKRRQR*QLLPMG
Trigger: ACCCATTGGAAGAAGCTGCCACCGCTGCCGTCTCTT...GAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535872.1
3UTR-3UTR GCA 90 bp GGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTGCTATCCTGGAGACCTaGTGCAAATCAGAGAACGGG +
Preference number: 2 (lower is better)
Translates to: GQSQKVLPSLAQASSLPLAILET*CKSENG
Trigger: CCCGTTCTCTGATTTGCAGCAGGTCTCCAGGATAGC...AAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535872.1
3UTR-3UTR TCA 90 bp CTCTTCTCCTCCTTCTTCACATTTTTCTCTGTGATTAGTAGCAGGTTAGGGTACCTGTATAAGCCGCAGTaGGGCTGGGGGCCAAGGGGG +
Preference number: 2 (lower is better)
Translates to: LFSSFFTFFSVISSRLGYLYKPQ*GWGPRG
Trigger: CCCCCTTGGCCCCCAGCCTCACTGCGGCTTATACAG...GTACCCTAACCTGCTACTAATCACAGAGAAAAATGTGAAGAAGGAGGAGAAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CCA 90 bp CCCTGGCCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCACATAAGCAGCTATCCTaGAGACCTGCTGCAAATCAG +
Preference number: 2 (lower is better)
Translates to: PWPELQRPVPKGSTLTCSHKQLS*RPAANQ
Trigger: CTGATTTGCAGCAGGTCTCCAGGATAGCTGCTTATG...TGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGGCCAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535872.1
3UTR CAA 90 bp CTGGCCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTaGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCTTCACATTT +
Preference number: 2 (lower is better)
Translates to: LARASKASPKRFYPH*LRLLAFLFSSFFTF
Trigger: AAATGTGAAGAAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR CAA 90 bp ACCCCTCTCTTCATGGGATCCCAAACTGTACAACCAGCTCCTCTTTaGCGTCCACACGGATCTGAGAAAGTGCACTGTAGGCATAAGCAG +
Preference number: 2 (lower is better)
Translates to: TPLFMGSQTVQPAPL*RPHGSEKVHCRHKQ
Trigger: CTGCTTATGCCTACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR GCA 90 bp CCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCACGGATCTGAGAAAGTaGACTGTAGGCATAAGCAGC +
Preference number: 2 (lower is better)
Translates to: PELQRPVPKGSTLTCSGFTDLRK*TVGISS
Trigger: GCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGT...GAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000535872.1
ENST00000538404.1
3UTR-3UTR GCA 90 bp TCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCAACCAGCTCCTCTTTTaGGTCCACACGGATCTGAGA +
Preference number: 2 (lower is better)
Translates to: SQKVLPSLAQASSLPLLLNQLLF*VHTDLR
Trigger: TCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTT...GAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CCA 90 bp CTCTTCTCCTCCTTCTTCACATTTTTCTCTGTGATTAGTAGCAGGTTAGGGTACTGGGGGCCAAGGGGGTaGGGTAGAGATGGGATGAAG +
Preference number: 2 (lower is better)
Translates to: LFSSFFTFFSVISSRLGYWGPRG*GRDGMK
Trigger: CTTCATCCCATCTCTACCCCACCCCCTTGGCCCCCA...GTACCCTAACCTGCTACTAATCACAGAGAAAAATGTGAAGAAGGAGGAGAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CCA 90 bp GGATCTGAGAAAGTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGAGACAGGACCCCTCTCTTCATaGGATCCCAAACTGTACAAC +
Preference number: 2 (lower is better)
Translates to: GSEKVHCRHKQLSWRPETGPLSS*DPKLYN
Trigger: GTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCC...TGTCTCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCTCAGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538404.1
3UTR-3UTR CCA 90 bp AGCATGACTTGGACACTATTCCCCTGGTGTGGTGATCTCAATTTAACCAGTATTAGTCAGTGGCAGTGCTaGTACCCAGGCCCACACTCC +
Preference number: 2 (lower is better)
Translates to: SMTWTLFPWCGDLNLTSISQWQC*YPGPHS
Trigger: GGAGTGTGGGCCTGGGTACCAGCACTGCCACTGACT...AATACTGGTTAAATTGAGATCACCACACCAGGGGAATAGTGTCCAAGTCATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535107.5
3UTR-3UTR CCA 90 bp GGATCTGAGAAAGTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGAGACAGGCAATCAGGAAAAATaGGGAGGGGAGATTAGATGG +
Preference number: 2 (lower is better)
Translates to: GSEKVHCRHKQLSWRPETGNQEK*GGEIRW
Trigger: CCATCTAATCTCCCCTCCCCATTTTTCCTGATTGCC...TGTCTCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCTCAGATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000538404.1
3UTR-3UTR GCA 90 bp ATGACTTGGACACTATTCCCCTGGTGTGGTGATCTCAATTTAACCAGTATTTTAGCAAGTCAGTGGCAGTaGTGGTACCCAGGCCCACAC +
Preference number: 2 (lower is better)
Translates to: MTWTLFPWCGDLNLTSILASQWQ*WYPGPH
Trigger: GTGTGGGCCTGGGTACCAGCACTGCCACTGACTTGC...TAAAATACTGGTTAAATTGAGATCACCACACCAGGGGAATAGTGTCCAAGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
3UTR-3UTR CCA 90 bp GAGATGGATACAGGGGAGACCATGAATAGGGATCATCAAAACAATCAGCCTAACTGGCTTCATTTCTTCTaGTCAGGCACAGAGCAGCAA +
Preference number: 2 (lower is better)
Translates to: EMDTGETMNRDHQNNQPNWLHFF*SGTEQQ
Trigger: TTGCTGCTCTGTGCCTGACCAGAAGAAATGAAGCCA...GTTAGGCTGATTGTTTTGATGATCCCTATTCATGGTCTCCCCTGTATCCATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545249.5
3UTR-3UTR TCA 90 bp ACTAAGTGGGCAGCTGTTACTTGGAACTGGATGCAGGCTGGTTTACCACAATCAGTCTTTCTGTGCTCATaGCAGGGTTCTATTATTTGT +
Preference number: 2 (lower is better)
Translates to: TKWAAVTWNWMQAGLPQSVFLCS*QGSIIC
Trigger: ACAAATAATAGAACCCTGTCATGAGCACAGAAAGAC...TGATTGTGGTAAACCAGCCTGCATCCAGTTCCAAGTAACAGCTGCCCACTTAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
3UTR CAA 90 bp GCCTCCTTTAAAGCTTCTGTTTGCTTCATGTTTATCGACATCTCATaGGCTAAAACAAGTCACATGTCTGGTCCCAGCATCAGAGTGAGA +
Preference number: 2 (lower is better)
Translates to: ASFKASVCFMFIDIS*AKTSHMSGPSIRVR
Trigger: TCTCACTCTGATGCTGGGACCAGACATGTGACTTGTTTTAGCCAATGAGATGTCGATAAACATGAAGCAAACAGAAGCTTTAAAGGAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545249.5
3UTR-3UTR GCA 90 bp AAAGAGATGGATACAGGGGAGACCATGAATAGGGATCATCAAAACAATCAGCCTTTACTTGGAACTGGATaGAGGCTGGTTTACCACAAT +
Preference number: 2 (lower is better)
Translates to: KEMDTGETMNRDHQNNQPLLGTG*RLVYHN
Trigger: ATTGTGGTAAACCAGCCTGCATCCAGTTCCAAGTAA...AGGCTGATTGTTTTGATGATCCCTATTCATGGTCTCCCCTGTATCCATCTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545249.5
3UTR CCA 72 bp AACGGGATGGGCTCACTGGCCAGCACTTGGTGGGGCTaGCTGGTAAGAGACGGCAGCGGTGGCAGCTTCTTC +
Preference number: 3 (lower is better)
Translates to: NGMGSLASTWWG*LVRDGSGGSFF
Trigger: GAAGAAGCTGCCACCGCTGCCGTCTCTTACCAGCCAGCCCCACCAAGTGCTGGCCAGTGAGCCCATCCCGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535872.1
3UTR-3UTR CAA 90 bp CCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCAGGTTCTACCCTCACTaGCTCAGGCTTCTAGCCTTC +
Preference number: 3 (lower is better)
Translates to: PELQRPVPKGSTLTCSGFRFYPH*LRLLAF
Trigger: GAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCT...GAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CAA 90 bp TCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCAACCAGCTCCTCTTTaGCGTCCACACGGATCTGAG +
Preference number: 3 (lower is better)
Translates to: SQKVLPSLAQASSLPLLLQPAPL*RPHGSE
Trigger: CTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTG...GAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR GCA 72 bp CAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTaGACTGTAGGCATAAGCAGCTATCCTGGAGACCTG +
Preference number: 3 (lower is better)
Translates to: QLLFCVHTDLRK*TVGISSYPGDL
Trigger: CAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000535872.1
ENST00000538404.1
3UTR-3UTR CAA 90 bp CTGTACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTGCACTGTAAGGTTCTACCCTCACTaGCTCAGGCTTCTAGCCTTC +
Preference number: 3 (lower is better)
Translates to: LYNQLLFCVHTDLRKCTVRFYPH*LRLLAF
Trigger: GAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCT...TACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CAA 90 bp TTCAAATTCAAGCTCATCCAGACCCTGGTCACAAACCCTAGTGAGGTGCATGTGCAACCAGCTCCTCTTTaGCGTCCACACGGATCTGAG +
Preference number: 3 (lower is better)
Translates to: FKFKLIQTLVTNPSEVHVQPAPL*RPHGSE
Trigger: CTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTG...CACATGCACCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCTTGAATTTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000538404.1
ENST00000544594.5
3UTR-3UTR CAA 90 bp CTCTTCTCCTCCTTCTTCACATTTTTCTCTGTGATTAGTAGCAGGTTAGGGTACAGGTTCTACCCTCACTaGCTCAGGCTTCTAGCCTTC +
Preference number: 3 (lower is better)
Translates to: LFSSFFTFFSVISSRLGYRFYPH*LRLLAF
Trigger: GAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCT...GTACCCTAACCTGCTACTAATCACAGAGAAAAATGTGAAGAAGGAGGAGAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
3UTR GCA 72 bp TATGTGCCTAGCATGATGCTCTGTCTTCCTGTTGCTTaGTGTGATAGAATCGTAGATCACCAAAGCTGGAAA +
Preference number: 3 (lower is better)
Translates to: YVPSMMLCLPVA*CDRIVDHQSWK
Trigger: TTTCCAGCTTTGGTGATCTACGATTCTATCACAGCAAGCAACAGGAAGACAGAGCATCATGCTAGGCACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535107.5
3UTR CCA 72 bp AGAGTATTCACTAAGTGGGCAGCTGTTACTTGGAACTaGATGCAGGCTGGTTTACCACAATCAATAGAAACT +
Preference number: 3 (lower is better)
Translates to: RVFTKWAAVTWN*MQAGLPQSIET
Trigger: AGTTTCTATTGATTGTGGTAAACCAGCCTGCATCCAGTTCCAAGTAACAGCTGCCCACTTAGTGAATACTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
3UTR CCA 72 bp ACAAGTCACATGTCTGGTCCCAGCATCAGAGTGAGATaGGACTACAATGTTATAGGCAAAAAGAGATGGATA +
Preference number: 3 (lower is better)
Translates to: TSHMSGPSIRVR*DYNVIGKKRWI
Trigger: TATCCATCTCTTTTTGCCTATAACATTGTAGTCCCATCTCACTCTGATGCTGGGACCAGACATGTGACTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR TCA 90 bp GAGAGGCAAGTCAGTGGCAGTGCTGGTACCCAGGCCCACACTCCTGACCCTCAGCCAGGCCCACACTCCTaGCCCTCAGATCACAGCTCC +
Preference number: 4 (lower is better)
Translates to: ERQVSGSAGTQAHTPDPQPGPHS*PSDHSS
Trigger: GGAGCTGTGATCTGAGGGTCAGGAGTGTGGGCCTGG...CTGAGGGTCAGGAGTGTGGGCCTGGGTACCAGCACTGCCACTGACTTGCCTCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CCA 90 bp GCCAACAGAGAGGGTGGGAAGGGGATCTCCCTAGGTCCCCTGGTGATCACCCCCAGCACTTGGTGGGGCTaGCTGGTAAGAGACGGCAGC +
Preference number: 4 (lower is better)
Translates to: ANREGGKGISLGPLVITPSTWWG*LVRDGS
Trigger: GCTGCCGTCTCTTACCAGCCAGCCCCACCAAGTGCT...GGGGGTGATCACCAGGGGACCTAGGGAGATCCCCTTCCCACCCTCTCTGTTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp AGGTGGGAGGGAGCTGGGGCCTACAAGGCTACCAGGCTCCCTAACTCCACCTTCACGGGATGGGCTCACTaGCCAGCACTTGGTGGGGCT +
Preference number: 4 (lower is better)
Translates to: RWEGAGAYKATRLPNSTFTGWAH*PALGGA
Trigger: AGCCCCACCAAGTGCTGGCCAGTGAGCCCATCCCGT...GAAGGTGGAGTTAGGGAGCCTGGTAGCCTTGTAGGCCCCAGCTCCCTCCCACCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR GCA 90 bp GAGAGGCAAGTCAGTGGCAGTGCTGGTACCCAGGCCCACACTCCTGACCCTCAGGAAGAGAGCAGGGCCTaGTCATCAGTGCGAGCGGAA +
Preference number: 4 (lower is better)
Translates to: ERQVSGSAGTQAHTPDPQEESRA*SSVRAE
Trigger: TTCCGCTCGCACTGATGAGCAGGCCCTGCTCTCTTC...CTGAGGGTCAGGAGTGTGGGCCTGGGTACCAGCACTGCCACTGACTTGCCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CCA 90 bp CAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCTGTAGCAGCACCCCATaGCCGGGGTCGGGCCGGGCG +
Preference number: 4 (lower is better)
Translates to: QSQKVLPSLAQASSLPLLCSSTP*PGSGRA
Trigger: CGCCCGGCCCGACCCCGGCCATGGGGTGCTGCTACA...GAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000278671.10
CDS-3UTR TCA 90 bp GCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCGAGGGACGGCGTCCGTaGGGAGCCCTTCCGGTCACA +
Preference number: 4 (lower is better)
Translates to: ASPKRFYPHLLRLLAFLFEGRRP*GALPVT
Trigger: TGTGACCGGAAGGGCTCCTCACGGACGCCGTCCCTC...GAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000278671.10
ENST00000535872.1
CDS-3UTR CCA 90 bp AAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCTGGTACCCAGGCAGTCAGTGGCAGTGCTaGTACCCAGGCCCACACTCC +
Preference number: 4 (lower is better)
Translates to: KGQLRLREASQWQCWYPGSQWQC*YPGPHS
Trigger: GGAGTGTGGGCCTGGGTACCAGCACTGCCACTGACT...GCCTGGGTACCAGCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR TCA 90 bp GAAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCTGGTACCCAGGCTGCTCCATGCCCTGTaGGTCTGCAGCAGACACATC +
Preference number: 4 (lower is better)
Translates to: EGATKAERGKSVAVLVPRLLHAL*VCSRHI
Trigger: GATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAG...CCTGGGTACCAGCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR TCA 90 bp GCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCCTGTATAAGCCGCAGTaGGGCTGGGGGCCAAGGGGG +
Preference number: 4 (lower is better)
Translates to: ASPKRFYPHLLRLLAFLFLYKPQ*GWGPRG
Trigger: CCCCCTTGGCCCCCAGCCTCACTGCGGCTTATACAG...GAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp CCATCCCTGGCCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCCCCCACCCCATCCCTaGCCAGAGCTTCAAAGGCCA +
Preference number: 4 (lower is better)
Translates to: PSLARASKASPKRFYPHLPPPHP*PELQRP
Trigger: TGGCCTTTGAAGCTCTGGCCAGGGATGGGGTGGGGG...CAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGGCCAGGGATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR TCA 90 bp GAGAGGCAAGTCAGTGGCAGTGCTGGTACCCAGGCCCACACTCCTGACCCTCAGCAGCAGACACATCAATaGTGTTGCTGGCTGTCTTGG +
Preference number: 4 (lower is better)
Translates to: ERQVSGSAGTQAHTPDPQQQTHQ*CCWLSW
Trigger: CCAAGACAGCCAGCAACATCATTGATGTGTCTGCTG...CTGAGGGTCAGGAGTGTGGGCCTGGGTACCAGCACTGCCACTGACTTGCCTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR TCA 90 bp GTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGCTGCAAATCAGAGAACGCTGTATAAGCCGCAGTaGGGCTGGGGGCCAAGGGGG +
Preference number: 4 (lower is better)
Translates to: VHCRHKQLSWRPAANQRTLYKPQ*GWGPRG
Trigger: CCCCCTTGGCCCCCAGCCTCACTGCGGCTTATACAG...CGTTCTCTGATTTGCAGCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000535872.1
CDS-3UTR TCA 90 bp CCCATCCCTGGCCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTCTTCCCTACCTCCTCTaGGGCAGAGTGGGTGAACCC +
Preference number: 4 (lower is better)
Translates to: PIPGQSFKGQSQKVLPSLLPYLL*GRVGEP
Trigger: GGGTTCACCCACTCTGCCTCAGAGGAGGTAGGGAAG...AAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGGCCAGGGATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR GCA 90 bp CCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCGGGCCTGCTCATCAGTaGGAGCGGAAGGCAGGCTGT +
Preference number: 4 (lower is better)
Translates to: PKRFYPHLLRLLAFLFSSGPAHQ*ERKAGC
Trigger: ACAGCCTGCCTTCCGCTCGCACTGATGAGCAGGCCC...GGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp GAGGCCAACAGAGAGGGTGGGAAGGGGATCTCCCTAGGTCCCCTGGTGATCACCAACCAGCTCCTCTTTTaGGTCCACACGGATCTGAGA +
Preference number: 4 (lower is better)
Translates to: EANREGGKGISLGPLVITNQLLF*VHTDLR
Trigger: TCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTT...GGTGATCACCAGGGGACCTAGGGAGATCCCCTTCCCACCCTCTCTGTTGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp TTGTATCTTGGCTTCATTTCTTCTGGTCAGGCACAGAGCAGCAAGCACTCAACATGTAGCAGCACCCCATaGCCGGGGTCGGGCCGGGCG +
Preference number: 4 (lower is better)
Translates to: LYLGFISSGQAQSSKHSTCSSTP*PGSGRA
Trigger: CGCCCGGCCCGACCCCGGCCATGGGGTGCTGCTACA...TGTTGAGTGCTTGCTGCTCTGTGCCTGACCAGAAGAAATGAAGCCAAGATACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp TTCAGTGAAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCTGGTACGCTCCTCTCGGTCCTaGTCCGAGTCCTCGTTCTCG +
Preference number: 4 (lower is better)
Translates to: FSEGATKAERGKSVAVLVRSSRS*SESSFS
Trigger: CGAGAACGAGGACTCGGACCAGGACCGAGAGGAGCG...TACCAGCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTTCACTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CCA 90 bp GTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGGGCCAACGCTCCTCTCGGTCCTaGTCCGAGTCCTCGTTCTCG +
Preference number: 4 (lower is better)
Translates to: VISSRLGYCISRSEAGGQRSSRS*SESSFS
Trigger: CGAGAACGAGGACTCGGACCAGGACCGAGAGGAGCG...TTGGCCCCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000278671.10
ENST00000538404.1
CDS-3UTR CCA 90 bp AGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGGGCCAAGGGGGTCTGTCTTGGCAAGGATaGAAGAGAGCAGGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: SSRLGYCISRSEAGGQGGLSWQG*KRAGPA
Trigger: AGCAGGCCCTGCTCTCTTCCATCCTTGCCAAGACAG...ACCCCCTTGGCCCCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp GTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGGGCCAAACGGGATGGGCTCACTaGCCAGCACTTGGTGGGGCT +
Preference number: 4 (lower is better)
Translates to: VISSRLGYCISRSEAGGQTGWAH*PALGGA
Trigger: AGCCCCACCAAGTGCTGGCCAGTGAGCCCATCCCGT...TTGGCCCCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp CTGTCCAAGGACCCCTCTCTTCATGGGATCCCAAACTGTACAACCAGCTCCTCTCCCCCACCCCATCCCTaGCCAGAGCTTCAAAGGCCA +
Preference number: 4 (lower is better)
Translates to: LSKDPSLHGIPNCTTSSSPPPHP*PELQRP
Trigger: TGGCCTTTGAAGCTCTGGCCAGGGATGGGGTGGGGG...AGAGGAGCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCCTTGGACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp GCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCGAGGTGGGAGGGAGCTaGGGCCTACAAGGCTACCAG +
Preference number: 4 (lower is better)
Translates to: ASPKRFYPHLLRLLAFLFEVGGS*GLQGYQ
Trigger: CTGGTAGCCTTGTAGGCCCCAGCTCCCTCCCACCTC...GAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR TCA 90 bp TTCAAATTCAAGCTCATCCAGACCCTGGTCACAAACCCTAGTGAGGTGCATGTGGAGGGACGGCGTCCGTaGGGAGCCCTTCCGGTCACA +
Preference number: 4 (lower is better)
Translates to: FKFKLIQTLVTNPSEVHVEGRRP*GALPVT
Trigger: TGTGACCGGAAGGGCTCCTCACGGACGCCGTCCCTC...CACATGCACCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCTTGAATTTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000278671.10
CDS-3UTR TCA 90 bp AAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCTTCTGTATAAGCCGCAGTaGGGCTGGGGGCCAAGGGGG +
Preference number: 4 (lower is better)
Translates to: KVLPSLAQASSLPLLLLLLYKPQ*GWGPRG
Trigger: CCCCCTTGGCCCCCAGCCTCACTGCGGCTTATACAG...AAGAAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR TCA 90 bp TTCTCTGTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGCTGTATAAGCCGCAGTaGGGCTGGGGGCCAAGGGGG +
Preference number: 4 (lower is better)
Translates to: FSVISSRLGYCISRSEAGLYKPQ*GWGPRG
Trigger: CCCCCTTGGCCCCCAGCCTCACTGCGGCTTATACAG...CCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCACAGAGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp GAGGCCAACAGAGAGGGTGGGAAGGGGATCTCCCTAGGTCCCCTGGTGATCACCACGGATCTGAGAAAGTaGACTGTAGGCATAAGCAGC +
Preference number: 4 (lower is better)
Translates to: EANREGGKGISLGPLVITTDLRK*TVGISS
Trigger: GCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGT...GGTGATCACCAGGGGACCTAGGGAGATCCCCTTCCCACCCTCTCTGTTGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp TTCAGTGAAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCTGGTAGCAAGTCAGTGGCAGTaGTGGTACCCAGGCCCACAC +
Preference number: 4 (lower is better)
Translates to: FSEGATKAERGKSVAVLVASQWQ*WYPGPH
Trigger: GTGTGGGCCTGGGTACCAGCACTGCCACTGACTTGC...TACCAGCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTTCACTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CCA 90 bp CTGTCCAAGGACCCCTCTCTTCATGGGATCCCAAACTGTACAACCAGCTCCTCTAGCACTTGGTGGGGCTaGCTGGTAAGAGACGGCAGC +
Preference number: 4 (lower is better)
Translates to: LSKDPSLHGIPNCTTSSSSTWWG*LVRDGS
Trigger: GCTGCCGTCTCTTACCAGCCAGCCCCACCAAGTGCT...AGAGGAGCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCCTTGGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp GTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGGGCCAACTGGCCAGCACTTGGTaGGGCTGGCTGGTAAGAGAC +
Preference number: 4 (lower is better)
Translates to: VISSRLGYCISRSEAGGQLASTW*GWLVRD
Trigger: GTCTCTTACCAGCCAGCCCCACCAAGTGCTGGCCAG...TTGGCCCCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp CAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCACGGGATGGGCTCACTaGCCAGCACTTGGTGGGGCT +
Preference number: 4 (lower is better)
Translates to: QSQKVLPSLAQASSLPLLTGWAH*PALGGA
Trigger: AGCCCCACCAAGTGCTGGCCAGTGAGCCCATCCCGT...GAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp GGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTTGGGGGCCAAGGGGGTaGGGTAGAGATGGGATGAAG +
Preference number: 4 (lower is better)
Translates to: GQSQKVLPSLAQASSLPLWGPRG*GRDGMK
Trigger: CTTCATCCCATCTCTACCCCACCCCCTTGGCCCCCA...AAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp GCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTGGGGGCCAAGGGGGTaGGGTAGAGATGGGATGAAG +
Preference number: 4 (lower is better)
Translates to: ASKASPKRFYPHLLRLLAWGPRG*GRDGMK
Trigger: CTTCATCCCATCTCTACCCCACCCCCTTGGCCCCCA...GGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp GTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGGGCCAATGGGGGCCAAGGGGGTaGGGTAGAGATGGGATGAAG +
Preference number: 4 (lower is better)
Translates to: VISSRLGYCISRSEAGGQWGPRG*GRDGMK
Trigger: CTTCATCCCATCTCTACCCCACCCCCTTGGCCCCCA...TTGGCCCCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR TCA 90 bp CTGTCCAAGGACCCCTCTCTTCATGGGATCCCAAACTGTACAACCAGCTCCTCTCTGCTCCATGCCCTGTaGGTCTGCAGCAGACACATC +
Preference number: 4 (lower is better)
Translates to: LSKDPSLHGIPNCTTSSSLLHAL*VCSRHI
Trigger: GATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAG...AGAGGAGCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCCTTGGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR TCA 90 bp GAAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCTGGTACCCAGGAAAGGAGCTGGAGCATaGCTTGGACACTATTCCCCT +
Preference number: 4 (lower is better)
Translates to: EGATKAERGKSVAVLVPRKGAGA*LGHYSP
Trigger: AGGGGAATAGTGTCCAAGTCATGCTCCAGCTCCTTT...CCTGGGTACCAGCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR TCA 90 bp AGAAAGTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGAGACAGAGAGGGCTGAGGCAGAGTGGGTaGACCCTCTGCCATACCCTG +
Preference number: 4 (lower is better)
Translates to: RKCTVGISSYPGDLRQRGLRQSG*TLCHTL
Trigger: CAGGGTATGGCAGAGGGTTCACCCACTCTGCCTCAG...CCCTCTCTGTCTCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR GCA 90 bp AGAGGGGAAAGGAGCTGGAGCATGACTTGGACACTATTCCCCTGGTGTGGTGATAGTCCTCGTTCTCGCTaGTGTAGCAGCACCCCATGG +
Preference number: 4 (lower is better)
Translates to: RGERSWSMTWTLFPWCGDSPRSR*CSSTPW
Trigger: CCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACT...ATCACCACACCAGGGGAATAGTGTCCAAGTCATGCTCCAGCTCCTTTCCCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR GCA 90 bp CCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCGAAGAGAGCAGGGCCTaGTCATCAGTGCGAGCGGAA +
Preference number: 4 (lower is better)
Translates to: PKRFYPHLLRLLAFLFSSEESRA*SSVRAE
Trigger: TTCCGCTCGCACTGATGAGCAGGCCCTGCTCTCTTC...GGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp GCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCAAGCGGGTGCTGTACTaGCTGGCACGGTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: ASPKRFYPHLLRLLAFLFKRVLY*LARSMY
Trigger: GTACATGGACCGTGCCAGGCAGTACAGCACCCGCTT...GAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR GCA 90 bp CAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCAATGGGTCAGGCTGCTaGTCAGCACAGCCAAGCGGG +
Preference number: 4 (lower is better)
Translates to: QSQKVLPSLAQASSLPLLNGSGC*SAQPSG
Trigger: CCCGCTTGGCTGTGCTGAGCAGCAGCCTGACCCATT...GAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR GCA 90 bp GTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGGGCCAATCCAATGGGTCAGGCTaGTGCTCAGCACAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: VISSRLGYCISRSEAGGQSNGSG*CSAQPS
Trigger: GCTTGGCTGTGCTGAGCAGCAGCCTGACCCATTGGA...TTGGCCCCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR GCA 90 bp CTGTCCAAGGACCCCTCTCTTCATGGGATCCCAAACTGTACAACCAGCTCCTCTCCTGGAGACCTGTACTaGCTGGCACGGTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: LSKDPSLHGIPNCTTSSSPGDLY*LARSMY
Trigger: GTACATGGACCGTGCCAGGCAGTACAGGTCTCCAGG...AGAGGAGCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCCTTGGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544594.5
CDS-3UTR CCA 90 bp AAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCTTCGCTCCTCTCGGTCCTaGTCCGAGTCCTCGTTCTCG +
Preference number: 4 (lower is better)
Translates to: KVLPSLAQASSLPLLLLLRSSRS*SESSFS
Trigger: CGAGAACGAGGACTCGGACCAGGACCGAGAGGAGCG...AAGAAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000278671.10
ENST00000538404.1
CDS-3UTR CCA 90 bp AGGTCTTCAGTGAAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCCTGTCTTGGCAAGGATaGAAGAGAGCAGGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: RSSVKGQLRLREASQWQCLSWQG*KRAGPA
Trigger: AGCAGGCCCTGCTCTCTTCCATCCTTGCCAAGACAG...GCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTTCACTGAAGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CCA 90 bp CCATCCCTGGCCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTGTCTTGGCAAGGATaGAAGAGAGCAGGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: PSLARASKASPKRFYPHLLSWQG*KRAGPA
Trigger: AGCAGGCCCTGCTCTCTTCCATCCTTGCCAAGACAG...CAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGGCCAGGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp TACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTGCACTGTAGGCAGCACTTGGTGGGGCTaGCTGGTAAGAGACGGCAGC +
Preference number: 4 (lower is better)
Translates to: YNQLLFCVHTDLRKCTVGSTWWG*LVRDGS
Trigger: GCTGCCGTCTCTTACCAGCCAGCCCCACCAAGTGCT...GCCTACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp AGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCCTGGCCAGCACTTGGTaGGGCTGGCTGGTAAGAGAC +
Preference number: 4 (lower is better)
Translates to: SPKRFYPHLLRLLAFLFSLASTW*GWLVRD
Trigger: GTCTCTTACCAGCCAGCCCCACCAAGTGCTGGCCAG...GGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp GTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGGGCCAATCACTGGCCAGCACTTaGTGGGGCTGGCTGGTAAGA +
Preference number: 4 (lower is better)
Translates to: VISSRLGYCISRSEAGGQSLAST*WGWLVR
Trigger: TCTTACCAGCCAGCCCCACCAAGTGCTGGCCAGTGA...TTGGCCCCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp AAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCCCCCCACCCCATCCCTaGCCAGAGCTTCAAAGGCCA +
Preference number: 4 (lower is better)
Translates to: KRFYPHLLRLLAFLFSSFPPPHP*PELQRP
Trigger: TGGCCTTTGAAGCTCTGGCCAGGGATGGGGTGGGGG...GAAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR TCA 90 bp AGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCCTGCTCCATGCCCTGTaGGTCTGCAGCAGACACATC +
Preference number: 4 (lower is better)
Translates to: SPKRFYPHLLRLLAFLFSLLHAL*VCSRHI
Trigger: GATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAG...GGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR TCA 90 bp CAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTGCTCCATGCCCTGTaGGTCTGCAGCAGACACATC +
Preference number: 4 (lower is better)
Translates to: QSQKVLPSLAQASSLPLLLLHAL*VCSRHI
Trigger: GATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAG...GAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp AGAAAGTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGAGACAGAGAGGGGAAGAGAGCAGGGCCTaGTCATCAGTGCGAGCGGAA +
Preference number: 4 (lower is better)
Translates to: RKCTVGISSYPGDLRQRGEESRA*SSVRAE
Trigger: TTCCGCTCGCACTGATGAGCAGGCCCTGCTCTCTTC...CCCTCTCTGTCTCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR GCA 90 bp CCATGTTCTCATGGCACTGGCAAAGAGCAAGAGGGCAGGCCTCCTTTAAAGCTTGAAGAGAGCAGGGCCTaGTCATCAGTGCGAGCGGAA +
Preference number: 4 (lower is better)
Translates to: PCSHGTGKEQEGRPPLKLEESRA*SSVRAE
Trigger: TTCCGCTCGCACTGATGAGCAGGCCCTGCTCTCTTC...AAGCTTTAAAGGAGGCCTGCCCTCTTGCTCTTTGCCAGTGCCATGAGAACATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR GCA 90 bp CCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCCGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: PELQRPVPKGSTLTCSGFRSMYS*CSMPCE
Trigger: CTCACAGGGCATGGAGCAGCATGAGTACATGGACCG...GAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp GCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCCGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: ASKASPKRFYPHLLRLLARSMYS*CSMPCE
Trigger: CTCACAGGGCATGGAGCAGCATGAGTACATGGACCG...GGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp TTCTCTGTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGAATGGGTCAGGCTGCTaGTCAGCACAGCCAAGCGGG +
Preference number: 4 (lower is better)
Translates to: FSVISSRLGYCISRSEAGNGSGC*SAQPSG
Trigger: CCCGCTTGGCTGTGCTGAGCAGCAGCCTGACCCATT...CCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCACAGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR GCA 90 bp TCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCTCCAATGGGTCAGGCTaGTGCTCAGCACAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: SQKVLPSLAQASSLPLLLSNGSG*CSAQPS
Trigger: GCTTGGCTGTGCTGAGCAGCAGCCTGACCCATTGGA...GAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR GCA 90 bp AAGCTCATCCAGACCCTGGTCACAAACCCTAGTGAGGTGCATGTGAGCACCAAGGAGGGGTGTCTCACCTaGTGCAAATCAGAGAACGGG +
Preference number: 4 (lower is better)
Translates to: KLIQTLVTNPSEVHVSTKEGCLT*CKSENG
Trigger: CCCGTTCTCTGATTTGCAGCAGGTGAGACACCCCTC...CTTGGTGCTCACATGCACCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR CCA 90 bp GCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCAAGAGACGGCAGCGGTaGCAGCTTCTTCCAATGGGT +
Preference number: 4 (lower is better)
Translates to: ASKASPKRFYPHLLRLLAKRRQR*QLLPMG
Trigger: ACCCATTGGAAGAAGCTGCCACCGCTGCCGTCTCTT...GGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp CACTGGCAAAGAGCAAGAGGGCAGGCCTCCTTTAAAGCTTCTGTTTGCTTCATGAGCACTTGGTGGGGCTaGCTGGTAAGAGACGGCAGC +
Preference number: 4 (lower is better)
Translates to: HWQRARGQASFKASVCFMSTWWG*LVRDGS
Trigger: GCTGCCGTCTCTTACCAGCCAGCCCCACCAAGTGCT...CATGAAGCAAACAGAAGCTTTAAAGGAGGCCTGCCCTCTTGCTCTTTGCCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp AAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCTGGTACCCAGGCTATGTCTGTACTGCCTaGCACGGTCCATGTACTCAT +
Preference number: 4 (lower is better)
Translates to: KGQLRLREASQWQCWYPGYVCTA*HGPCTH
Trigger: ATGAGTACATGGACCGTGCCAGGCAGTACAGACATA...GCCTGGGTACCAGCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CCA 90 bp CCCTGGCCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGAGACCTGTACTGCCTaGCACGGTCCATGTACTCAT +
Preference number: 4 (lower is better)
Translates to: PWPELQRPVPKGSTLTCSETCTA*HGPCTH
Trigger: ATGAGTACATGGACCGTGCCAGGCAGTACAGGTCTC...TGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGGCCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544594.5
CDS-3UTR TCA 90 bp TTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCTGCTCCATGCCCTGTaGGTCTGCAGCAGACACATC +
Preference number: 4 (lower is better)
Translates to: FKGQSQKVLPSLAQASSLLLHAL*VCSRHI
Trigger: GATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAG...AAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp TTCTCTGTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGAGTCCTCGTTCTCGCTaGTGTAGCAGCACCCCATGG +
Preference number: 4 (lower is better)
Translates to: FSVISSRLGYCISRSEAGSPRSR*CSSTPW
Trigger: CCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACT...CCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCACAGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000278671.10
ENST00000538404.1
CDS-3UTR GCA 90 bp TTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTGAAGAGAGCAGGGCCTaGTCATCAGTGCGAGCGGAA +
Preference number: 4 (lower is better)
Translates to: FKGQSQKVLPSLAQASSLEESRA*SSVRAE
Trigger: TTCCGCTCGCACTGATGAGCAGGCCCTGCTCTCTTC...AAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp TTCTCTGTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGGAAGAGAGCAGGGCCTaGTCATCAGTGCGAGCGGAA +
Preference number: 4 (lower is better)
Translates to: FSVISSRLGYCISRSEAGEESRA*SSVRAE
Trigger: TTCCGCTCGCACTGATGAGCAGGCCCTGCTCTCTTC...CCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCACAGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp AGAAAGTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGAGACAGAGAGGGCGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: RKCTVGISSYPGDLRQRGRSMYS*CSMPCE
Trigger: CTCACAGGGCATGGAGCAGCATGAGTACATGGACCG...CCCTCTCTGTCTCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR GCA 90 bp AAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCAAGCGGGTGCTGTACTaGCTGGCACGGTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: KRFYPHLLRLLAFLFSSFKRVLY*LARSMY
Trigger: GTACATGGACCGTGCCAGGCAGTACAGCACCCGCTT...GAAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR GCA 90 bp CTGTCCAAGGACCCCTCTCTTCATGGGATCCCAAACTGTACAACCAGCTCCTCTGCTATCCTGGAGACCTaGTGCAAATCAGAGAACGGG +
Preference number: 4 (lower is better)
Translates to: LSKDPSLHGIPNCTTSSSAILET*CKSENG
Trigger: CCCGTTCTCTGATTTGCAGCAGGTCTCCAGGATAGC...AGAGGAGCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCCTTGGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535872.1
CDS-3UTR GCA 90 bp AGAGGGGAAAGGAGCTGGAGCATGACTTGGACACTATTCCCCTGGTGTGGTGATCCTGTATGTCTGTACTaGCTGGCACGGTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: RGERSWSMTWTLFPWCGDPVCLY*LARSMY
Trigger: GTACATGGACCGTGCCAGGCAGTACAGACATACAGG...ATCACCACACCAGGGGAATAGTGTCCAAGTCATGCTCCAGCTCCTTTCCCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR GCA 90 bp GAGAGGCAAGTCAGTGGCAGTGCTGGTACCCAGGCCCACACTCCTGACCCTCAGTGTCTTCCTGTTGCTTaGTGTGATAGAATCGTAGAT +
Preference number: 4 (lower is better)
Translates to: ERQVSGSAGTQAHTPDPQCLPVA*CDRIVD
Trigger: ATCTACGATTCTATCACAGCAAGCAACAGGAAGACA...CTGAGGGTCAGGAGTGTGGGCCTGGGTACCAGCACTGCCACTGACTTGCCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR GCA 90 bp AAGCTCATCCAGACCCTGGTCACAAACCCTAGTGAGGTGCATGTGAGCACCAAGGGGTGTCTCACCTGCTaGAAATCAGAGAACGGGATG +
Preference number: 4 (lower is better)
Translates to: KLIQTLVTNPSEVHVSTKGCLTC*KSENGM
Trigger: CATCCCGTTCTCTGATTTGCAGCAGGTGAGACACCC...CTTGGTGCTCACATGCACCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR CCA 90 bp CCCTGGCCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCATGTTGCTGGCTGTCTTaGCAAGGATGGAAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: PWPELQRPVPKGSTLTCSCCWLS*QGWKRA
Trigger: TGCTCTCTTCCATCCTTGCCAAGACAGCCAGCAACA...TGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGGCCAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp TTCAAATTCAAGCTCATCCAGACCCTGGTCACAAACCCTAGTGAGGTGCATGTGCTGGCCAGCACTTGGTaGGGCTGGCTGGTAAGAGAC +
Preference number: 4 (lower is better)
Translates to: FKFKLIQTLVTNPSEVHVLASTW*GWLVRD
Trigger: GTCTCTTACCAGCCAGCCCCACCAAGTGCTGGCCAG...CACATGCACCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCTTGAATTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000278671.10
ENST00000538404.1
CDS-3UTR CCA 90 bp ACTAAGTGGGCAGCTGTTACTTGGAACTGGATGCAGGCTGGTTTACCACAATCACTGGCCAGCACTTGGTaGGGCTGGCTGGTAAGAGAC +
Preference number: 4 (lower is better)
Translates to: TKWAAVTWNWMQAGLPQSLASTW*GWLVRD
Trigger: GTCTCTTACCAGCCAGCCCCACCAAGTGCTGGCCAG...TGATTGTGGTAAACCAGCCTGCATCCAGTTCCAAGTAACAGCTGCCCACTTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp AAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCTTTCACTGGCCAGCACTTaGTGGGGCTGGCTGGTAAGA +
Preference number: 4 (lower is better)
Translates to: KVLPSLAQASSLPLLLLLSLAST*WGWLVR
Trigger: TCTTACCAGCCAGCCCCACCAAGTGCTGGCCAGTGA...AAGAAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp AAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCAGCTCATCCAGACCCTaGTCACAAACCCTAGTGAGG +
Preference number: 4 (lower is better)
Translates to: KASPKRFYPHLLRLLAFLSSSRP*SQTLVR
Trigger: CCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCT...GAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp AAACTGTACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTGCACTAGTCCTCGTTCTCGCTaGTGTAGCAGCACCCCATGG +
Preference number: 4 (lower is better)
Translates to: KLYNQLLFCVHTDLRKCTSPRSR*CSSTPW
Trigger: CCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACT...AGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR CCA 90 bp CTGTACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTGCACTGTACTGTCTTGGCAAGGATaGAAGAGAGCAGGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: LYNQLLFCVHTDLRKCTVLSWQG*KRAGPA
Trigger: AGCAGGCCCTGCTCTCTTCCATCCTTGCCAAGACAG...TACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp AAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCTTCTGTCTTGGCAAGGATaGAAGAGAGCAGGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: KVLPSLAQASSLPLLLLLLSWQG*KRAGPA
Trigger: AGCAGGCCCTGCTCTCTTCCATCCTTGCCAAGACAG...AAGAAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp AGAGGGGAAAGGAGCTGGAGCATGACTTGGACACTATTCCCCTGGTGTGGTGATTGTTGCTGGCTGTCTTaGCAAGGATGGAAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: RGERSWSMTWTLFPWCGDCCWLS*QGWKRA
Trigger: TGCTCTCTTCCATCCTTGCCAAGACAGCCAGCAACA...ATCACCACACCAGGGGAATAGTGTCCAAGTCATGCTCCAGCTCCTTTCCCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CCA 90 bp TTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTGGGTGCTGTACTGCCTaGCACGGTCCATGTACTCAT +
Preference number: 4 (lower is better)
Translates to: FKGQSQKVLPSLAQASSLGCCTA*HGPCTH
Trigger: ATGAGTACATGGACCGTGCCAGGCAGTACAGCACCC...AAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp TTCTCTGTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGGGGTGCTGTACTGCCTaGCACGGTCCATGTACTCAT +
Preference number: 4 (lower is better)
Translates to: FSVISSRLGYCISRSEAGGCCTA*HGPCTH
Trigger: ATGAGTACATGGACCGTGCCAGGCAGTACAGCACCC...CCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCACAGAGAA
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp CTGTACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTGCACTGTAAAGAGACGGCAGCGGTaGCAGCTTCTTCCAATGGGT +
Preference number: 4 (lower is better)
Translates to: LYNQLLFCVHTDLRKCTVKRRQR*QLLPMG
Trigger: ACCCATTGGAAGAAGCTGCCACCGCTGCCGTCTCTT...TACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp GGATCTGAGAAAGTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGAGACAAAGAGACGGCAGCGGTaGCAGCTTCTTCCAATGGGT +
Preference number: 4 (lower is better)
Translates to: GSEKVHCRHKQLSWRPETKRRQR*QLLPMG
Trigger: ACCCATTGGAAGAAGCTGCCACCGCTGCCGTCTCTT...TGTCTCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCTCAGATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR CCA 90 bp CTGTCCAAGGACCCCTCTCTTCATGGGATCCCAAACTGTACAACCAGCTCCTCTGGACCCCTCTCTTCATaGGATCCCAAACTGTACAAC +
Preference number: 4 (lower is better)
Translates to: LSKDPSLHGIPNCTTSSSGPLSS*DPKLYN
Trigger: GTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCC...AGAGGAGCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCCTTGGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp TTCAGTGAAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCTGGTAAGCTGGAGCATGACTTaGACACTATTCCCCTGGTGT +
Preference number: 4 (lower is better)
Translates to: FSEGATKAERGKSVAVLVSWSMT*TLFPWC
Trigger: ACACCAGGGGAATAGTGTCCAAGTCATGCTCCAGCT...TACCAGCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTTCACTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CCA 90 bp TTCAGTGAAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCTGGTAAGAGGGGAAAGGAGCTaGAGCATGACTTGGACACTA +
Preference number: 4 (lower is better)
Translates to: FSEGATKAERGKSVAVLVRGERS*SMTWTL
Trigger: TAGTGTCCAAGTCATGCTCCAGCTCCTTTCCCCTCT...TACCAGCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTTCACTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CCA 90 bp TTCTCTGTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGTCCTCTGAGGCAGAGTaGGTGAACCCTCTGCCATAC +
Preference number: 4 (lower is better)
Translates to: FSVISSRLGYCISRSEAGSSEAE*VNPLPY
Trigger: GTATGGCAGAGGGTTCACCCACTCTGCCTCAGAGGA...CCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCACAGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR CCA 90 bp CAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCATAAGCAGCTATCCTaGAGACCTGTACTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: QSQKVLPSLAQASSLPLLHKQLS*RPVLPG
Trigger: GCCAGGCAGTACAGGTCTCCAGGATAGCTGCTTATG...GAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544594.5
CDS-3UTR TCA 90 bp AGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCCAGCAGACACATCAATaGTGTTGCTGGCTGTCTTGG +
Preference number: 4 (lower is better)
Translates to: SPKRFYPHLLRLLAFLFSQQTHQ*CCWLSW
Trigger: CCAAGACAGCCAGCAACATCATTGATGTGTCTGCTG...GGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR TCA 90 bp AGAGGGGAAAGGAGCTGGAGCATGACTTGGACACTATTCCCCTGGTGTGGTGATAGCTCCTTTTCAGTGTaGTGCCCTGTATGTCTGTAC +
Preference number: 4 (lower is better)
Translates to: RGERSWSMTWTLFPWCGDSSFSV*CPVCLY
Trigger: GTACAGACATACAGGGCATCACACTGAAAAGGAGCT...ATCACCACACCAGGGGAATAGTGTCCAAGTCATGCTCCAGCTCCTTTCCCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR GCA 90 bp TTCAAATTCAAGCTCATCCAGACCCTGGTCACAAACCCTAGTGAGGTGCATGTGCGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: FKFKLIQTLVTNPSEVHVRSMYS*CSMPCE
Trigger: CTCACAGGGCATGGAGCAGCATGAGTACATGGACCG...CACATGCACCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCTTGAATTTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp TTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTGCTATCCTGGAGACCTaGTGCAAATCAGAGAACGGG +
Preference number: 4 (lower is better)
Translates to: FKGQSQKVLPSLAQASSLAILET*CKSENG
Trigger: CCCGTTCTCTGATTTGCAGCAGGTCTCCAGGATAGC...AAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000278671.10
ENST00000535872.1
CDS-3UTR GCA 90 bp GTGATTAGTAGCAGGTTAGGGTACTGTATAAGCCGCAGTGAGGCTGGGGGCCAAACGGATCTGAGAAAGTaGACTGTAGGCATAAGCAGC +
Preference number: 4 (lower is better)
Translates to: VISSRLGYCISRSEAGGQTDLRK*TVGISS
Trigger: GCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGT...TTGGCCCCCAGCCTCACTGCGGCTTATACAGTACCCTAACCTGCTACTAATCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp CCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCACGGATCTGAGAAAGTaGACTGTAGGCATAAGCAGC +
Preference number: 4 (lower is better)
Translates to: PKRFYPHLLRLLAFLFSSTDLRK*TVGISS
Trigger: GCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGT...GGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp CAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCAACCAGCTCCTCTTTTaGGTCCACACGGATCTGAGA +
Preference number: 4 (lower is better)
Translates to: QSQKVLPSLAQASSLPLLNQLLF*VHTDLR
Trigger: TCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTT...GAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp AGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTGTTGCTGGCTGTCTTaGCAAGGATGGAAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: SPKRFYPHLLRLLAFLFSCCWLS*QGWKRA
Trigger: TGCTCTCTTCCATCCTTGCCAAGACAGCCAGCAACA...GGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp ACTAAGTGGGCAGCTGTTACTTGGAACTGGATGCAGGCTGGTTTACCACAATCAAAGAGACGGCAGCGGTaGCAGCTTCTTCCAATGGGT +
Preference number: 4 (lower is better)
Translates to: TKWAAVTWNWMQAGLPQSKRRQR*QLLPMG
Trigger: ACCCATTGGAAGAAGCTGCCACCGCTGCCGTCTCTT...TGATTGTGGTAAACCAGCCTGCATCCAGTTCCAAGTAACAGCTGCCCACTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp AAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCTTAGCTCATCCAGACCCTaGTCACAAACCCTAGTGAGG +
Preference number: 4 (lower is better)
Translates to: KVLPSLAQASSLPLLLLLSSSRP*SQTLVR
Trigger: CCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCT...AAGAAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp TCTGAGAAAGTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGAGACAGAGAGCTCATCCAGACCCTaGTCACAAACCCTAGTGAGG +
Preference number: 4 (lower is better)
Translates to: SEKVHCRHKQLSWRPETESSSRP*SQTLVR
Trigger: CCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCT...CTCTGTCTCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCTCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR CCA 90 bp GAAGAGCTGTCCAAGGACCCCTCTCTTCATGGGATCCCAAACTGTACAACCAGCGGCAATCAGGAAAAATaGGGAGGGGAGATTAGATGG +
Preference number: 4 (lower is better)
Translates to: EELSKDPSLHGIPNCTTSGNQEK*GGEIRW
Trigger: CCATCTAATCTCCCCTCCCCATTTTTCCTGATTGCC...GCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCCTTGGACAGCTCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR CCA 90 bp TACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTGCACTGTAGGCCATAAGCAGCTATCCTaGAGACCTGAGACAGAGAGG +
Preference number: 4 (lower is better)
Translates to: YNQLLFCVHTDLRKCTVGHKQLS*RPETER
Trigger: CCTCTCTGTCTCAGGTCTCCAGGATAGCTGCTTATG...GCCTACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538404.1
CDS-3UTR TCA 90 bp AGGTCTTCAGTGAAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCATTCCCCTGGTGTGGTaGTCTCAATTTAACCAGTAT +
Preference number: 4 (lower is better)
Translates to: RSSVKGQLRLREASQWQCIPLVW*SQFNQY
Trigger: ATACTGGTTAAATTGAGATCACCACACCAGGGGAAT...GCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTTCACTGAAGACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR GCA 90 bp GAGATGGATACAGGGGAGACCATGAATAGGGATCATCAAAACAATCAGCCTAACAAGCGGGTGCTGTACTaGCTGGCACGGTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: EMDTGETMNRDHQNNQPNKRVLY*LARSMY
Trigger: GTACATGGACCGTGCCAGGCAGTACAGCACCCGCTT...GTTAGGCTGATTGTTTTGATGATCCCTATTCATGGTCTCCCCTGTATCCATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR GCA 90 bp CTCTTCTCCTCCTTCTTCACATTTTTCTCTGTGATTAGTAGCAGGTTAGGGTACAATGGGTCAGGCTGCTaGTCAGCACAGCCAAGCGGG +
Preference number: 4 (lower is better)
Translates to: LFSSFFTFFSVISSRLGYNGSGC*SAQPSG
Trigger: CCCGCTTGGCTGTGCTGAGCAGCAGCCTGACCCATT...GTACCCTAACCTGCTACTAATCACAGAGAAAAATGTGAAGAAGGAGGAGAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR GCA 90 bp AAAGAGATGGATACAGGGGAGACCATGAATAGGGATCATCAAAACAATCAGCCTAATGGGTCAGGCTGCTaGTCAGCACAGCCAAGCGGG +
Preference number: 4 (lower is better)
Translates to: KEMDTGETMNRDHQNNQPNGSGC*SAQPSG
Trigger: CCCGCTTGGCTGTGCTGAGCAGCAGCCTGACCCATT...AGGCTGATTGTTTTGATGATCCCTATTCATGGTCTCCCCTGTATCCATCTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR GCA 90 bp TTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTAACCAGCTCCTCTTTTaGGTCCACACGGATCTGAGA +
Preference number: 4 (lower is better)
Translates to: FKGQSQKVLPSLAQASSLNQLLF*VHTDLR
Trigger: TCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTT...AAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp CTGTACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTGCACTGTAAACCAGCTCCTCTTTTaGGTCCACACGGATCTGAGA +
Preference number: 4 (lower is better)
Translates to: LYNQLLFCVHTDLRKCTVNQLLF*VHTDLR
Trigger: TCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTT...TACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp CTGGATGCAGGCTGGTTTACCACAATCAATAGAAACTCAGCAGGTCTTTCTGTGCTGTCTTGGCAAGGATaGAAGAGAGCAGGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: LDAGWFTTINRNSAGLSVLSWQG*KRAGPA
Trigger: AGCAGGCCCTGCTCTCTTCCATCCTTGCCAAGACAG...CACAGAAAGACCTGCTGAGTTTCTATTGATTGTGGTAAACCAGCCTGCATCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp CTGGATGCAGGCTGGTTTACCACAATCAATAGAAACTCAGCAGGTCTTTCTGTGGGGTGCTGTACTGCCTaGCACGGTCCATGTACTCAT +
Preference number: 4 (lower is better)
Translates to: LDAGWFTTINRNSAGLSVGCCTA*HGPCTH
Trigger: ATGAGTACATGGACCGTGCCAGGCAGTACAGCACCC...CACAGAAAGACCTGCTGAGTTTCTATTGATTGTGGTAAACCAGCCTGCATCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp AGGCCTCCTTTAAAGCTTCTGTTTGCTTCATGTTTATCGACATCTCATTGGCTAACGGGATGGGCTCACTaGCCAGCACTTGGTGGGGCT +
Preference number: 4 (lower is better)
Translates to: RPPLKLLFASCLSTSHWLTGWAH*PALGGA
Trigger: AGCCCCACCAAGTGCTGGCCAGTGAGCCCATCCCGT...TAGCCAATGAGATGTCGATAAACATGAAGCAAACAGAAGCTTTAAAGGAGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp CACGGATCTGAGAAAGTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGCTCATAAGCAGCTATCCTaGAGACCTGCTGCAAATCAG +
Preference number: 4 (lower is better)
Translates to: HGSEKVHCRHKQLSWRPAHKQLS*RPAANQ
Trigger: CTGATTTGCAGCAGGTCTCCAGGATAGCTGCTTATG...AGCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535872.1
CDS-3UTR CCA 90 bp TTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTGGACCCCTCTCTTCATaGGATCCCAAACTGTACAAC +
Preference number: 4 (lower is better)
Translates to: FKGQSQKVLPSLAQASSLGPLSS*DPKLYN
Trigger: GTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCC...AAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp AGGTCTTCAGTGAAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCTGGACACTATTCCCCTaGTGTGGTGATCTCAATTTA +
Preference number: 4 (lower is better)
Translates to: RSSVKGQLRLREASQWQCWTLFP*CGDLNL
Trigger: TAAATTGAGATCACCACACCAGGGGAATAGTGTCCA...GCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTTCACTGAAGACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR TCA 90 bp TTCAAATTCAAGCTCATCCAGACCCTGGTCACAAACCCTAGTGAGGTGCATGTGCAGCAGACACATCAATaGTGTTGCTGGCTGTCTTGG +
Preference number: 4 (lower is better)
Translates to: FKFKLIQTLVTNPSEVHVQQTHQ*CCWLSW
Trigger: CCAAGACAGCCAGCAACATCATTGATGTGTCTGCTG...CACATGCACCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCTTGAATTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp ATGGATACAGGGGAGACCATGAATAGGGATCATCAAAACAATCAGCCTAACACAAGTCCTCGTTCTCGCTaGTGTAGCAGCACCCCATGG +
Preference number: 4 (lower is better)
Translates to: MDTGETMNRDHQNNQPNTSPRSR*CSSTPW
Trigger: CCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACT...TGTGTTAGGCTGATTGTTTTGATGATCCCTATTCATGGTCTCCCCTGTATCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR GCA 90 bp CTCTTCTCCTCCTTCTTCACATTTTTCTCTGTGATTAGTAGCAGGTTAGGGTACAAGCGGGTGCTGTACTaGCTGGCACGGTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: LFSSFFTFFSVISSRLGYKRVLY*LARSMY
Trigger: GTACATGGACCGTGCCAGGCAGTACAGCACCCGCTT...GTACCCTAACCTGCTACTAATCACAGAGAAAAATGTGAAGAAGGAGGAGAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR GCA 90 bp CTGTACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTGCACTGTAACGGATCTGAGAAAGTaGACTGTAGGCATAAGCAGC +
Preference number: 4 (lower is better)
Translates to: LYNQLLFCVHTDLRKCTVTDLRK*TVGISS
Trigger: GCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGT...TACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp CATTCAAATTCAAGCTCATCCAGACCCTGGTCACAAACCCTAGTGAGGTGCATGTGTTGCTGGCTGTCTTaGCAAGGATGGAAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: HSNSSSSRPWSQTLVRCMCCWLS*QGWKRA
Trigger: TGCTCTCTTCCATCCTTGCCAAGACAGCCAGCAACA...CATGCACCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCTTGAATTTGAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp TTCAAATTCAAGCTCATCCAGACCCTGGTCACAAACCCTAGTGAGGTGCATGTGTGTTGCTGGCTGTCTTaGCAAGGATGGAAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: FKFKLIQTLVTNPSEVHVCCWLS*QGWKRA
Trigger: TGCTCTCTTCCATCCTTGCCAAGACAGCCAGCAACA...CACATGCACCTCACTAGGGTTTGTGACCAGGGTCTGGATGAGCTTGAATTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CCA 90 bp CTCTTCTCCTCCTTCTTCACATTTTTCTCTGTGATTAGTAGCAGGTTAGGGTACTCACTGGCCAGCACTTaGTGGGGCTGGCTGGTAAGA +
Preference number: 4 (lower is better)
Translates to: LFSSFFTFFSVISSRLGYSLAST*WGWLVR
Trigger: TCTTACCAGCCAGCCCCACCAAGTGCTGGCCAGTGA...GTACCCTAACCTGCTACTAATCACAGAGAAAAATGTGAAGAAGGAGGAGAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS-3UTR CCA 90 bp AAACTGTACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTGCACTGGACCCCTCTCTTCATaGGATCCCAAACTGTACAAC +
Preference number: 4 (lower is better)
Translates to: KLYNQLLFCVHTDLRKCTGPLSS*DPKLYN
Trigger: GTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCC...AGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR GCA 90 bp AGCATGACTTGGACACTATTCCCCTGGTGTGGTGATCTCAATTTAACCAGTATTCGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: SMTWTLFPWCGDLNLTSIRSMYS*CSMPCE
Trigger: CTCACAGGGCATGGAGCAGCATGAGTACATGGACCG...AATACTGGTTAAATTGAGATCACCACACCAGGGGAATAGTGTCCAAGTCATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CCA 90 bp CAGCATCAGAGTGAGATGGGACTACAATGTTATAGGCAAAAAGAGATGGATACATCACTGGCCAGCACTTaGTGGGGCTGGCTGGTAAGA +
Preference number: 4 (lower is better)
Translates to: QHQSEMGLQCYRQKEMDTSLAST*WGWLVR
Trigger: TCTTACCAGCCAGCCCCACCAAGTGCTGGCCAGTGA...TGTATCCATCTCTTTTTGCCTATAACATTGTAGTCCCATCTCACTCTGATGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR TCA 90 bp GCCTCCTTTAAAGCTTCTGTTTGCTTCATGTTTATCGACATCTCATTGGCTAAACTGCTCCATGCCCTGTaGGTCTGCAGCAGACACATC +
Preference number: 4 (lower is better)
Translates to: ASFKASVCFMFIDISLAKLLHAL*VCSRHI
Trigger: GATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAG...TTTAGCCAATGAGATGTCGATAAACATGAAGCAAACAGAAGCTTTAAAGGAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR TCA 90 bp CCTACACATCTCATAACCCTCCAGCTGATCAGCCATGTTCTCATGGCACTGGCAGTCTTTCTGTGCTCATaGCAGGGTTCTATTATTTGT +
Preference number: 4 (lower is better)
Translates to: PTHLITLQLISHVLMALAVFLCS*QGSIIC
Trigger: ACAAATAATAGAACCCTGTCATGAGCACAGAAAGAC...TGCCAGTGCCATGAGAACATGGCTGATCAGCTGGAGGGTTATGAGATGTGTAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR GCA 90 bp CAGCATCAGAGTGAGATGGGACTACAATGTTATAGGCAAAAAGAGATGGATACACGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: QHQSEMGLQCYRQKEMDTRSMYS*CSMPCE
Trigger: CTCACAGGGCATGGAGCAGCATGAGTACATGGACCG...TGTATCCATCTCTTTTTGCCTATAACATTGTAGTCCCATCTCACTCTGATGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp ATGACTTGGACACTATTCCCCTGGTGTGGTGATCTCAATTTAACCAGTATTTTAAGAGAGGCAAGTCAGTaGCAGTGCTGGTACCCAGGC +
Preference number: 4 (lower is better)
Translates to: MTWTLFPWCGDLNLTSILREASQ*QCWYPG
Trigger: GCCTGGGTACCAGCACTGCCACTGACTTGCCTCTCT...TAAAATACTGGTTAAATTGAGATCACCACACCAGGGGAATAGTGTCCAAGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR GCA 90 bp TCTTTCTGTGCTCATGACAGGGTTCTATTATTTGTATCTTGGCTTCATTTCTTCTCCAATGGGTCAGGCTaGTGCTCAGCACAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: SFCAHDRVLLFVSWLHFFSNGSG*CSAQPS
Trigger: GCTTGGCTGTGCTGAGCAGCAGCCTGACCCATTGGA...GAAGAAATGAAGCCAAGATACAAATAATAGAACCCTGTCATGAGCACAGAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp AGGCCTCCTTTAAAGCTTCTGTTTGCTTCATGTTTATCGACATCTCATTGGCTATGTTGCTGGCTGTCTTaGCAAGGATGGAAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: RPPLKLLFASCLSTSHWLCCWLS*QGWKRA
Trigger: TGCTCTCTTCCATCCTTGCCAAGACAGCCAGCAACA...TAGCCAATGAGATGTCGATAAACATGAAGCAAACAGAAGCTTTAAAGGAGGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp CTCTTCTCCTCCTTCTTCACATTTTTCTCTGTGATTAGTAGCAGGTTAGGGTACCATAAGCAGCTATCCTaGAGACCTGCTGCAAATCAG +
Preference number: 4 (lower is better)
Translates to: LFSSFFTFFSVISSRLGYHKQLS*RPAANQ
Trigger: CTGATTTGCAGCAGGTCTCCAGGATAGCTGCTTATG...GTACCCTAACCTGCTACTAATCACAGAGAAAAATGTGAAGAAGGAGGAGAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000278671.10
ENST00000535872.1
CDS-3UTR CCA 90 bp AAAGAGATGGATACAGGGGAGACCATGAATAGGGATCATCAAAACAATCAGCCTTGGCTTCATTTCTTCTaGTCAGGCACAGAGCAGCAA +
Preference number: 4 (lower is better)
Translates to: KEMDTGETMNRDHQNNQPWLHFF*SGTEQQ
Trigger: TTGCTGCTCTGTGCCTGACCAGAAGAAATGAAGCCA...AGGCTGATTGTTTTGATGATCCCTATTCATGGTCTCCCCTGTATCCATCTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR TCA 90 bp GTATTCACTAAGTGGGCAGCTGTTACTTGGAACTGGATGCAGGCTGGTTTACCATTGAATATCTTACTGTaGACAAGGTGTGGACTGAAA +
Preference number: 4 (lower is better)
Translates to: VFTKWAAVTWNWMQAGLPLNILL*TRCGLK
Trigger: TTTCAGTCCACACCTTGTTCACAGTAAGATATTCAA...TGGTAAACCAGCCTGCATCCAGTTCCAAGTAACAGCTGCCCACTTAGTGAATAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp TCTTTCTGTGCTCATGACAGGGTTCTATTATTTGTATCTTGGCTTCATTTCTTCTGGGCAGCTGTTACTTaGAACTGGATGCAGGCTGGT +
Preference number: 4 (lower is better)
Translates to: SFCAHDRVLLFVSWLHFFWAAVT*NWMQAG
Trigger: ACCAGCCTGCATCCAGTTCCAAGTAACAGCTGCCCA...GAAGAAATGAAGCCAAGATACAAATAATAGAACCCTGTCATGAGCACAGAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR GCA 90 bp AGCAGGTCTTTCTGTGCTCATGACAGGGTTCTATTATTTGTATCTTGGCTTCATTTACTTGGAACTGGATaGAGGCTGGTTTACCACAAT +
Preference number: 4 (lower is better)
Translates to: SRSFCAHDRVLLFVSWLHLLGTG*RLVYHN
Trigger: ATTGTGGTAAACCAGCCTGCATCCAGTTCCAAGTAA...ATGAAGCCAAGATACAAATAATAGAACCCTGTCATGAGCACAGAAAGACCTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR CCA 90 bp TCTTTCTGTGCTCATGACAGGGTTCTATTATTTGTATCTTGGCTTCATTTCTTCACTGTGAACAAGGTGTaGACTGAAACAGCTGAACCT +
Preference number: 4 (lower is better)
Translates to: SFCAHDRVLLFVSWLHFFTVNKV*TETAEP
Trigger: AGGTTCAGCTGTTTCAGTCCACACCTTGTTCACAGT...GAAGAAATGAAGCCAAGATACAAATAATAGAACCCTGTCATGAGCACAGAAAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS-3UTR TCA 90 bp GCCTCCTTTAAAGCTTCTGTTTGCTTCATGTTTATCGACATCTCATTGGCTAAAACTAGAACTGAGTGTTaGAACATGAGAGAGTATTCA +
Preference number: 4 (lower is better)
Translates to: ASFKASVCFMFIDISLAKTRTEC*NMREYS
Trigger: TGAATACTCTCTCATGTTTCAACACTCAGTTCTAGT...TTTAGCCAATGAGATGTCGATAAACATGAAGCAAACAGAAGCTTTAAAGGAGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS CCA 90 bp GGTCCTGGTCCGAGTCCTCGTTCTCGCTGCTGTAGCAGCACCCCATaGCCGGGGTCGGGCCGGGCGCTCAGGCCGCGCCGAGGAGGGACG +
Preference number: 5 (lower is better)
Translates to: GPGPSPRSRCCSSTP*PGSGRALRPRRGGT
Trigger: CGTCCCTCCTCGGCGCGGCCTGAGCGCCCGGCCCGACCCCGGCCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACTCGGACCAGGACC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000278671.10
ENST00000541403.1
CDS GCA 90 bp GCAGCTTCCGCTCCTCTCGGTCCTGGTCCGAGTCCTCGTTCTCGCTaGTGTAGCAGCACCCCATGGCCGGGGTCGGGCCGGGCGCTCAGG +
Preference number: 5 (lower is better)
Translates to: AASAPLGPGPSPRSR*CSSTPWPGSGRALR
Trigger: CCTGAGCGCCCGGCCCGACCCCGGCCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACTCGGACCAGGACCGAGAGGAGCGGAAGCTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000278671.10
ENST00000541403.1
CDS GCA 90 bp CCAAGTAGCCTGAGGGACCCACGCTGGCCAGGTGCTCACCTGTACTaGCTGGCACGGTCCATGTACTCATGCTGCTCCATGCCCTGTGAG +
Preference number: 5 (lower is better)
Translates to: PSSLRDPRWPGAHLY*LARSMYSCCSMPCE
Trigger: CTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTACAGGTGAGCACCTGGCCAGCGTGGGTCCCTCAGGCTACTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541403.1
CDS CCA 90 bp ACTGGCCAGCACTTGGTGGGGCTGGCTGGTAAGAGACGGCAGCGGTaGCAGCTTCTTCCAATGGGTCAGGCTGCTGCTCAGCACAGCCAA +
Preference number: 5 (lower is better)
Translates to: TGQHLVGLAGKRRQR*QLLPMGQAAAQHSQ
Trigger: TTGGCTGTGCTGAGCAGCAGCCTGACCCATTGGAAGAAGCTGCCACCGCTGCCGTCTCTTACCAGCCAGCCCCACCAAGTGCTGGCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000539797.5
ENST00000545249.5
CDS CCA 90 bp ACAGTGATGGAGGGTGGGAGCCCAAGTAGCCTGAGGGACCCACGCTaGCCAGGTGCTCACCTGTACTGCCTGGCACGGTCCATGTACTCA +
Preference number: 5 (lower is better)
Translates to: TVMEGGSPSSLRDPR*PGAHLYCLARSMYS
Trigger: TGAGTACATGGACCGTGCCAGGCAGTACAGGTGAGCACCTGGCCAGCGTGGGTCCCTCAGGCTACTTGGGCTCCCACCCTCCATCACTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541403.1
CDS-3UTR CAA 90 bp CCAGAGCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCCTCACTGGCCAGCACTaGGTGGGGCTGGCTGGTAAG +
Preference number: 5 (lower is better)
Translates to: PELQRPVPKGSTLTCSGFLTGQH*VGLAGK
Trigger: CTTACCAGCCAGCCCCACCAAGTGCTGGCCAGTGAG...GAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGCTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS GCA 90 bp ACAGCCAAGCGGGTGCTGTACTGCCTGGCACGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAGTCTGCAGCAGACACATCAATGATG +
Preference number: 5 (lower is better)
Translates to: TAKRVLYCLARSMYS*CSMPCESAADTSMM
Trigger: CATCATTGATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTACAGCACCCGCTTGGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000539797.5
ENST00000545249.5
CDS-3UTR CAA 90 bp GTGCACTGTAGGCATAAGCAGCTATCCTGGAGACCTGCTGCAAATCAGAGAACGCTCACTGGCCAGCACTaGGTGGGGCTGGCTGGTAAG +
Preference number: 5 (lower is better)
Translates to: VHCRHKQLSWRPAANQRTLTGQH*VGLAGK
Trigger: CTTACCAGCCAGCCCCACCAAGTGCTGGCCAGTGAG...CGTTCTCTGATTTGCAGCAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535872.1
CDS-3UTR CAA 90 bp CATGGCACTGGCAAAGAGCAAGAGGGCAGGCCTCCTTTAAAGCTTCTGTTTGCTCTCACTGGCCAGCACTaGGTGGGGCTGGCTGGTAAG +
Preference number: 5 (lower is better)
Translates to: HGTGKEQEGRPPLKLLFALTGQH*VGLAGK
Trigger: CTTACCAGCCAGCCCCACCAAGTGCTGGCCAGTGAG...AGCAAACAGAAGCTTTAAAGGAGGCCTGCCCTCTTGCTCTTTGCCAGTGCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS TCA 90 bp GTACTGCCTGGCACGGTCCATGTACTCATGCTGCTCCATGCCCTGTaGGTCTGCAGCAGACACATCAATGATGTTGCTGGCTGTCTTGGC +
Preference number: 5 (lower is better)
Translates to: VLPGTVHVLMLLHAL*VCSRHINDVAGCLG
Trigger: GCCAAGACAGCCAGCAACATCATTGATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000278671.10
ENST00000535107.5
ENST00000535872.1
ENST00000538404.1
ENST00000539797.5
ENST00000541403.1
ENST00000544594.5
ENST00000545249.5
CDS-3UTR CAA 90 bp CAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCTCACTGGCCAGCACTaGGTGGGGCTGGCTGGTAAG +
Preference number: 5 (lower is better)
Translates to: QKVLPSLAQASSLPLLLLLTGQH*VGLAGK
Trigger: CTTACCAGCCAGCCCCACCAAGTGCTGGCCAGTGAG...AAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
CDS GCA 90 bp AGCTATCCTGGAGACCTGTACTGCCTGGCACGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAGTCTGCAGCAGACACATCAATGATG +
Preference number: 5 (lower is better)
Translates to: SYPGDLYCLARSMYS*CSMPCESAADTSMM
Trigger: CATCATTGATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTACAGGTCTCCAGGATAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544594.5
CDS-3UTR CAA 90 bp TTCAGTGAAGGGGCAACTAAGGCTGAGAGAGGCAAGTCAGTGGCAGTGCTGGTAGAGCTGGAGCATGACTaGGACACTATTCCCCTGGTG +
Preference number: 5 (lower is better)
Translates to: FSEGATKAERGKSVAVLVELEHD*DTIPLV
Trigger: CACCAGGGGAATAGTGTCCAAGTCATGCTCCAGCTC...TACCAGCACTGCCACTGACTTGCCTCTCTCAGCCTTAGTTGCCCCTTCACTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS-3UTR CAA 90 bp GCTTCAAAGGCCAGTCCCAAAAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCAGGTTCTACCCTCACTaGCTCAGGCTTCTAGCCTTC +
Preference number: 5 (lower is better)
Translates to: ASKASPKRFYPHLLRLLARFYPH*LRLLAF
Trigger: GAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCT...GGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTTTTGGGACTGGCCTTTGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS-3UTR CAA 90 bp GAAGAGCTGTCCAAGGACCCCTCTCTTCATGGGATCCCAAACTGTACAACCAGCAGGTTCTACCCTCACTaGCTCAGGCTTCTAGCCTTC +
Preference number: 5 (lower is better)
Translates to: EELSKDPSLHGIPNCTTSRFYPH*LRLLAF
Trigger: GAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCT...GCTGGTTGTACAGTTTGGGATCCCATGAAGAGAGGGGTCCTTGGACAGCTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS GCA 90 bp CTGTACAACCAGCTCCTCTTTTGCGTCCACACGGATCTGAGAAAGTaGACTGTAGGCATAAGCAGCTATCCTGGAGACCTGTACTGCCTG +
Preference number: 5 (lower is better)
Translates to: LYNQLLFCVHTDLRK*TVGISSYPGDLYCL
Trigger: CAGGCAGTACAGGTCTCCAGGATAGCTGCTTATGCCTACAGTGCACTTTCTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTGTACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544594.5
CDS-3UTR CAA 90 bp AAGGTTCTACCCTCACTTGCTCAGGCTTCTAGCCTTCCTCTTCTCCTCCTTCTTCAACCAGCTCCTCTTTaGCGTCCACACGGATCTGAG +
Preference number: 5 (lower is better)
Translates to: KVLPSLAQASSLPLLLLLQPAPL*RPHGSE
Trigger: CTCAGATCCGTGTGGACGCAAAAGAGGAGCTGGTTG...AAGAAGGAGGAGAAGAGGAAGGCTAGAAGCCTGAGCAAGTGAGGGTAGAACCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000544594.5
CDS TCA 90 bp CCTCAAGAGTGTCACAGGGTAAACAGGGCTGACATGAATAACTACTaGAGCACCCAAGTGATCTGTGGTCAGTCTCCAGGGCTGCACCAA +
Preference number: 5 (lower is better)
Translates to: PQECHRVNRADMNNY*STQVICGQSPGLHQ
Trigger: TTGGTGCAGCCCTGGAGACTGACCACAGATCACTTGGGTGCTTCAGTAGTTATTCATGTCAGCCCTGTTTACCCTGTGACACTCTTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541403.1
CDS-3UTR CAA 90 bp ACTAAGTGGGCAGCTGTTACTTGGAACTGGATGCAGGCTGGTTTACCACAATCATTTATCGACATCTCATaGGCTAAAACAAGTCACATG +
Preference number: 5 (lower is better)
Translates to: TKWAAVTWNWMQAGLPQSFIDIS*AKTSHM
Trigger: CATGTGACTTGTTTTAGCCAATGAGATGTCGATAAA...TGATTGTGGTAAACCAGCCTGCATCCAGTTCCAAGTAACAGCTGCCCACTTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545249.5
CDS CCA 72 bp CCGAGTCCTCGTTCTCGCTGCTGTAGCAGCACCCCATaGCCGGGGTCGGGCCGGGCGCTCAGGCCGCGCCGA +
Preference number: 6 (lower is better)
Translates to: PSPRSRCCSSTP*PGSGRALRPRR
Trigger: TCGGCGCGGCCTGAGCGCCCGGCCCGACCCCGGCCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACTCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000278671.10
ENST00000541403.1
CDS GCA 72 bp GCTCCTCTCGGTCCTGGTCCGAGTCCTCGTTCTCGCTaGTGTAGCAGCACCCCATGGCCGGGGTCGGGCCGG +
Preference number: 6 (lower is better)
Translates to: APLGPGPSPRSR*CSSTPWPGSGR
Trigger: CCGGCCCGACCCCGGCCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACTCGGACCAGGACCGAGAGGAGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000278671.10
ENST00000541403.1
ENST00000545249.5
CDS GCA 72 bp GCAGCGGTGGCAGCTTCTTCCAATGGGTCAGGCTGCTaGTCAGCACAGCCAAGCGGGTGCTGTACTGCCTGG +
Preference number: 6 (lower is better)
Translates to: AAVAASSNGSGC*SAQPSGCCTAW
Trigger: CCAGGCAGTACAGCACCCGCTTGGCTGTGCTGAGCAGCAGCCTGACCCATTGGAAGAAGCTGCCACCGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000539797.5
ENST00000545249.5
CDS GCA 72 bp ACGGCAGCGGTGGCAGCTTCTTCCAATGGGTCAGGCTaGTGCTCAGCACAGCCAAGCGGGTGCTGTACTGCC +
Preference number: 6 (lower is better)
Translates to: TAAVAASSNGSG*CSAQPSGCCTA
Trigger: GGCAGTACAGCACCCGCTTGGCTGTGCTGAGCAGCAGCCTGACCCATTGGAAGAAGCTGCCACCGCTGCCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000539797.5
ENST00000545249.5
CDS CCA 72 bp GGGACCCACGCTGGCCAGGTGCTCACCTGTACTGCCTaGCACGGTCCATGTACTCATGCTGCTCCATGCCCT +
Preference number: 6 (lower is better)
Translates to: GTHAGQVLTCTA*HGPCTHAAPCP
Trigger: AGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTACAGGTGAGCACCTGGCCAGCGTGGGTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541403.1
CDS GCA 72 bp CTGAGGGACCCACGCTGGCCAGGTGCTCACCTGTACTaGCTGGCACGGTCCATGTACTCATGCTGCTCCATG +
Preference number: 6 (lower is better)
Translates to: LRDPRWPGAHLY*LARSMYSCCSM
Trigger: CATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTACAGGTGAGCACCTGGCCAGCGTGGGTCCCTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541403.1
CDS GCA 72 bp CGGGTGCTGTACTGCCTGGCACGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAGTCTGCAGCAGACACA +
Preference number: 6 (lower is better)
Translates to: RVLYCLARSMYS*CSMPCESAADT
Trigger: TGTGTCTGCTGCAGACTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTACAGCACCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000278671.10
ENST00000535872.1
ENST00000538404.1
ENST00000539797.5
ENST00000545249.5
CDS GCA 72 bp CCGCTCCTCTCGGTCCTTCAGTGCCAGACTCCTCAATaGTCCCCTCCAGGCCTATCTCAGTTCCTCAGTCTT +
Preference number: 6 (lower is better)
Translates to: PLLSVLQCQTPQ*SPPGLSQFLSL
Trigger: AAGACTGAGGAACTGAGATAGGCCTGGAGGGGAGCATTGAGGAGTCTGGCACTGAAGGACCGAGAGGAGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000539797.5
CDS GCA 72 bp GGAGACCTGTACTGCCTGGCACGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAGTCTGCAGCAGACACA +
Preference number: 6 (lower is better)
Translates to: GDLYCLARSMYS*CSMPCESAADT
Trigger: TGTGTCTGCTGCAGACTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTACAGGTCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544594.5
CDS GCA 72 bp GCTCACCTGTACTGCCTGGCACGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAGTCTGCAGCAGACACA +
Preference number: 6 (lower is better)
Translates to: AHLYCLARSMYS*CSMPCESAADT
Trigger: TGTGTCTGCTGCAGACTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTACAGGTGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541403.1
CDS TCA 72 bp GGCACGGTCCATGTACTCATGCTGCTCCATGCCCTGTaGGTCTGCAGCAGACACATCAATGATGTTGCTGGC +
Preference number: 6 (lower is better)
Translates to: GTVHVLMLLHAL*VCSRHINDVAG
Trigger: GCCAGCAACATCATTGATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000278671.10
ENST00000535107.5
ENST00000535872.1
ENST00000538404.1
ENST00000539797.5
ENST00000541403.1
ENST00000544594.5
ENST00000545249.5
CDS GCA 72 bp GTATGTCTGTACTGCCTGGCACGGTCCATGTACTCATaGTGCTCCATGCCCTGTGAGTCTGCAGCAGACACA +
Preference number: 6 (lower is better)
Translates to: VCLYCLARSMYS*CSMPCESAADT
Trigger: TGTGTCTGCTGCAGACTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTACAGACATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535107.5
CDS TCA 72 bp TGTCACAGGGTAAACAGGGCTGACATGAATAACTACTaGAGCACCCAAGTGATCTGTGGTCAGTCTCCAGGG +
Preference number: 6 (lower is better)
Translates to: CHRVNRADMNNY*STQVICGQSPG
Trigger: CCCTGGAGACTGACCACAGATCACTTGGGTGCTTCAGTAGTTATTCATGTCAGCCCTGTTTACCCTGTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541403.1