Pregenerated sensors for KRTAP3-1 (Homo sapiens)
Ensembl gene IDs: ENSG00000212901Ensembl transcript IDs: ENST00000391588.3, ENST00000571440.2, ENST00000580358.1, ENST00000581033.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTTGGTGCAGAGGACATTaGGCAGCCACCTCACGGAAC | + |
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Preference number: 2 (lower is better) Translates to: SRLGPGDWDGLSLDVGSSWCRGH*AATSRN Trigger: GTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCA...ACTACTGCCTACATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| 3UTR-3UTR CAA 90 bp | TCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTATGGTGCAGAGGACATaGGGCAGCCACCTCACGGAA | + |
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Preference number: 3 (lower is better) Translates to: SRLGPGDWDGLSLDVGSSMVQRT*GSHLTE Trigger: TTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCAT...ACTACTGCCTACATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR GCA 90 bp | ATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTGGGCCGGTGGGGACGCTaGAGGAGCGGAGAGCACAGC | + |
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Preference number: 4 (lower is better) Translates to: MVQRTLGSHLTEPVQTRLGRWGR*RSGEHS Trigger: GCTGTGCTCTCCGCTCCTGCAGCGTCCCCACCGGCC...CAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR GCA 90 bp | TCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGGCCGGTGGGGACGCTaGAGGAGCGGAGAGCACAGC | + |
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Preference number: 4 (lower is better) Translates to: SRLGPGDWDGLSLDVGSSGRWGR*RSGEHS Trigger: GCTGTGCTCTCCGCTCCTGCAGCGTCCCCACCGGCC...ACTACTGCCTACATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR TCA 90 bp | AGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACAGTCCGGGAGTCGGGTaGCAGTTGTTGAGCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: SPDGAEDIGQPPHGTCADSPGVG*QLLSSQ Trigger: CTGGCTGCTCAACAACTGTCACCCGACTCCCGGACT...GTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR TCA 90 bp | CAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCATAGGTGGTCAGGTTaGTCCCACTCAGTCCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: QMVQRTLGSHLTEPVQTRHRWSG*SHSVRE Trigger: CTCCCGGACTGAGTGGGATCAACCTGACCACCTATG...CCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR TCA 90 bp | ATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTGCATAGGTGGTCAGGTTaGTCCCACTCAGTCCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: MVQRTLGSHLTEPVQTRLHRWSG*SHSVRE Trigger: CTCCCGGACTGAGTGGGATCAACCTGACCACCTATG...CAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | GCTGAAGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGTGGTGCAGAGGACATTaGGCAGCCACCTCACGGAAC | + |
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Preference number: 4 (lower is better) Translates to: AEAQMVQRTLGSHLTEPVWCRGH*AATSRN Trigger: GTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCA...CACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCTTCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | AGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACCTTGGCCCCGGGGATTaGGATGGCCTTAGCCTTGAT | + |
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Preference number: 4 (lower is better) Translates to: SPDGAEDIGQPPHGTCADLGPGD*DGLSLD Trigger: ATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAG...GTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | CAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTTGGCCCCGGGGATTaGGATGGCCTTAGCCTTGAT | + |
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Preference number: 4 (lower is better) Translates to: QMVQRTLGSHLTEPVQTRLGPGD*DGLSLD Trigger: ATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAG...CCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| 3UTR CAA 72 bp | GTAGTGAGTGCTGAAGCCCAGATGGTGCAGAGGACATaGGGCAGCCACCTCACGGAACCTGTGCAGACTCGG | + |
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Preference number: 4 (lower is better) Translates to: VVSAEAQMVQRT*GSHLTEPVQTR Trigger: CCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCTTCAGCACTCACTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR TCA 90 bp | CAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGTCGGGTGACAGTTGTTaGGCAGCCAGCAAGTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: QMVQRTLGSHLTEPVQTRSGDSC*AASKLA Trigger: TGCCAACTTGCTGGCTGCTCAACAACTGTCACCCGA...CCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | CAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGGTGCTGAAGCCCAGATaGTGCAGAGGACATTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: QMVQRTLGSHLTEPVQTRVLKPR*CRGHWA Trigger: TGCCCAATGTCCTCTGCACCATCTGGGCTTCAGCAC...CCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR GCA 90 bp | ATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTGACCTCACGGAACCTGTaGAGACTCGGCTGGTTAACA | + |
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Preference number: 4 (lower is better) Translates to: MVQRTLGSHLTEPVQTRLTSRNL*RLGWLT Trigger: TGTTAACCAGCCGAGTCTGCACAGGTTCCGTGAGGT...CAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | GCTGAAGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGAGATTCATCAAGACTTaGCCCCGGGGATTGGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: AEAQMVQRTLGSHLTEPVRFIKT*PRGLGW Trigger: CCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCT...CACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCTTCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR TCA 90 bp | AGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACGCAGCTTTTATCAAATaGGCAGAAGGTGGTGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SPDGAEDIGQPPHGTCADAAFIK*AEGGGR Trigger: CCTGCCACCACCTTCTGCTCATTTGATAAAAGCTGC...GTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR TCA 90 bp | ATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTGGCAGCTTTTATCAAATaGGCAGAAGGTGGTGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: MVQRTLGSHLTEPVQTRLAAFIK*AEGGGR Trigger: CCTGCCACCACCTTCTGCTCATTTGATAAAAGCTGC...CAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | GCTGAAGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGGAGCAGCCAGCAAGTTaGCACATAGGTATCAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: AEAQMVQRTLGSHLTEPVEQPAS*HIGIRL Trigger: AAGCCTGATACCTATGTGCCAACTTGCTGGCTGCTC...CACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCTTCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR TCA 90 bp | GAAGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAAGTCCGGGAGTCGGGTaGCAGTTGTTGAGCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: EDSSRLGPGDWDGLSLDVSPGVG*QLLSSQ Trigger: CTGGCTGCTCAACAACTGTCACCCGACTCCCGGACT...TACATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | AGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACGAGCACAGCAATACATaGCAATGGGAGGTGGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: SPDGAEDIGQPPHGTCADEHSNT*QWEVGF Trigger: AAAACCCACCTCCCATTGCCATGTATTGCTGTGCTC...GTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | AGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACCATGGCAATGGGAGGTaGGTTTTTGTTGAGTTGAGA | + |
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Preference number: 4 (lower is better) Translates to: SPDGAEDIGQPPHGTCADHGNGR*VFVELR Trigger: TCTCAACTCAACAAAAACCCACCTCCCATTGCCATG...GTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | GAAGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTACTGTGCAGACTCGGCTaGTTAACAGCGGGGCTCACA | + |
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Preference number: 4 (lower is better) Translates to: EDSSRLGPGDWDGLSLDVLCRLG*LTAGLT Trigger: TGTGAGCCCCGCTGTTAACCAGCCGAGTCTGCACAG...TACATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR GCA 90 bp | GAAGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAACCTCACGGAACCTGTaGAGACTCGGCTGGTTAACA | + |
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Preference number: 4 (lower is better) Translates to: EDSSRLGPGDWDGLSLDVTSRNL*RLGWLT Trigger: TGTTAACCAGCCGAGTCTGCACAGGTTCCGTGAGGT...TACATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | ATAATTAAGAAGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCCTGTGCAGACTCGGCTaGTTAACAGCGGGGCTCACA | + |
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Preference number: 4 (lower is better) Translates to: IIKKIHQDLAPGIGMALALCRLG*LTAGLT Trigger: TGTGAGCCCCGCTGTTAACCAGCCGAGTCTGCACAG...GGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTTCTTAATTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR TCA 90 bp | TCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGGGTTTTTGTTGAGTTaGGAGAAGTCTGTTGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: SRLGPGDWDGLSLDVGSSGFLLS*EKSVGV Trigger: GACACCAACAGACTTCTCTCAACTCAACAAAAACCC...ACTACTGCCTACATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000391588.3 |
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| CDS-3UTR CCA 90 bp | ATAATTAAGAAGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCGTGCTGAAGCCCAGATaGTGCAGAGGACATTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: IIKKIHQDLAPGIGMALAVLKPR*CRGHWA Trigger: TGCCCAATGTCCTCTGCACCATCTGGGCTTCAGCAC...GGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTTCTTAATTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | GAAGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGAGCACAGCAATACATaGCAATGGGAGGTGGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: EDSSRLGPGDWDGLSLDVEHSNT*QWEVGF Trigger: AAAACCCACCTCCCATTGCCATGTATTGCTGTGCTC...TACATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CCA 90 bp | ATAATTAAGAAGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCAGATTCATCAAGACTTaGCCCCGGGGATTGGGATGG | + |
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Preference number: 4 (lower is better) Translates to: IIKKIHQDLAPGIGMALARFIKT*PRGLGW Trigger: CCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCT...GGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTTCTTAATTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR TCA 90 bp | ATAATTAAGAAGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCGAGGTGGGTTTTTGTTaGGTTGAGAGAAGTCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: IIKKIHQDLAPGIGMALAEVGFC*VERSLL Trigger: CAACAGACTTCTCTCAACTCAACAAAAACCCACCTC...GGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTTCTTAATTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000391588.3 |
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| CDS-3UTR CCA 90 bp | ATAATTAAGAAGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCCATGGCAATGGGAGGTaGGTTTTTGTTGAGTTGAGA | + |
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Preference number: 4 (lower is better) Translates to: IIKKIHQDLAPGIGMALAHGNGR*VFVELR Trigger: TCTCAACTCAACAAAAACCCACCTCCCATTGCCATG...GGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTTCTTAATTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS GCA 90 bp | CCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTaGAGACTCGGCTGGTTAACAGCGGGGCTCACAGGGACTCTCACA | + |
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Preference number: 5 (lower is better) Translates to: PRWCRGHWAATSRNL*RLGWLTAGLTGTLT Trigger: TGTGAGAGTCCCTGTGAGCCCCGCTGTTAACCAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000391588.3 ENST00000571440.2 ENST00000580358.1 ENST00000581033.1 |
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| CDS CCA 90 bp | AGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTaGTTAACAGCGGGGCTCACAGGGACTCTCACAGCCAGGCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: RGHWAATSRNLCRLG*LTAGLTGTLTARLN Trigger: GTTCAGCCTGGCTGTGAGAGTCCCTGTGAGCCCCGCTGTTAACCAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000391588.3 ENST00000571440.2 ENST00000580358.1 ENST00000581033.1 |
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| CDS-3UTR CAA 90 bp | AGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACATGGTGCAGAGGACATaGGGCAGCCACCTCACGGAA | + |
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Preference number: 5 (lower is better) Translates to: SPDGAEDIGQPPHGTCADMVQRT*GSHLTE Trigger: TTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCAT...GTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CAA 90 bp | CAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGATGGTGCAGAGGACATaGGGCAGCCACCTCACGGAA | + |
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Preference number: 5 (lower is better) Translates to: QMVQRTLGSHLTEPVQTRMVQRT*GSHLTE Trigger: TTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCAT...CCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CAA 90 bp | GCTGAAGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGAAGATTCATCAAGACTaGGCCCCGGGGATTGGGATG | + |
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Preference number: 5 (lower is better) Translates to: AEAQMVQRTLGSHLTEPVKIHQD*APGIGM Trigger: CATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTT...CACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCTTCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS CCA 90 bp | GTTCCTAACAGGCCAGGGACAGGTATCGCTCTGCAACCCGGGGCTTaGGGACCCCATAATGTAGAATCAATGGGAGCCCTGAGCTTGTTT | + |
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Preference number: 5 (lower is better) Translates to: VPNRPGTGIALQPGA*GPHNVESMGALSLF Trigger: AAACAAGCTCAGGGCTCCCATTGATTCTACATTATGGGGTCCCCAAGCCCCGGGTTGCAGAGCGATACCTGTCCCTGGCCTGTTAGGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000580358.1 ENST00000581033.1 |
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| CDS-3UTR CAA 90 bp | TCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTAAGATTCATCAAGACTaGGCCCCGGGGATTGGGATG | + |
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Preference number: 5 (lower is better) Translates to: SRLGPGDWDGLSLDVGSSKIHQD*APGIGM Trigger: CATCCCAATCCCCGGGGCCAAGTCTTGATGAATCTT...ACTACTGCCTACATCAAGGCTAAGGCCATCCCAATCCCCGGGGCCAAGTCTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENST00000391588.3 ENST00000571440.2 |
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| CDS-3UTR CAA 90 bp | ATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTGTGGGTTTTTGTTGAGTaGAGAGAAGTCTGTTGGTGT | + |
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Preference number: 5 (lower is better) Translates to: MVQRTLGSHLTEPVQTRLWVFVE*REVCWC Trigger: ACACCAACAGACTTCTCTCAACTCAACAAAAACCCA...CAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000391588.3 |
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| CDS CCA 72 bp | TGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTaGTTAACAGCGGGGCTCACAGGGACTCTCACAGCC | + |
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Preference number: 6 (lower is better) Translates to: WAATSRNLCRLG*LTAGLTGTLTA Trigger: GGCTGTGAGAGTCCCTGTGAGCCCCGCTGTTAACCAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000391588.3 ENST00000571440.2 ENST00000580358.1 ENST00000581033.1 |
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| CDS GCA 72 bp | TGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTaGAGACTCGGCTGGTTAACAGCGGGGCTCACAGGG | + |
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Preference number: 6 (lower is better) Translates to: CRGHWAATSRNL*RLGWLTAGLTG Trigger: CCCTGTGAGCCCCGCTGTTAACCAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000391588.3 ENST00000571440.2 ENST00000580358.1 ENST00000581033.1 |
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| CDS CCA 72 bp | AGGCCAGGGACAGGTATCGCTCTGCAACCCGGGGCTTaGGGACCCCATAATGTAGAATCAATGGGAGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: RPGTGIALQPGA*GPHNVESMGAL Trigger: CAGGGCTCCCATTGATTCTACATTATGGGGTCCCCAAGCCCCGGGTTGCAGAGCGATACCTGTCCCTGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000580358.1 ENST00000581033.1 |
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