Pregenerated sensors for KRAS (Homo sapiens)
Ensembl gene IDs: ENSG00000133703Ensembl transcript IDs: ENST00000256078.10, ENST00000311936.8, ENST00000556131.1
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGAGATGGAGGTTGCAGTaGGCTGAGATGGCGCCACTG | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWRWRLQ*AEMAPL Trigger: CAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCT...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGCACAGGGCCTGGCCTTaGAACCTTGGTCTCTTCAAC | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWHRAWP*NLGLFN Trigger: GTTGAAGAGACCAAGGTTGCAAGGCCAGGCCCTGTG...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGGCCCAAGACTGGCACTaGAGATGGTGTAACATAGGT | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWAQDWH*RWCNIG Trigger: ACCTATGTTACACCATCTTCAGTGCCAGTCTTGGGC...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGAGGACCACCACAGAGTaGGATTGTATCTTGTTGAGC | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWRTTTE*DCILLS Trigger: GCTCAACAAGATACAATCTCACTCTGTGGTGGTCCT...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGTTGAGCTATCCAAACTaGCCTAGTCCCTCCCCATTT | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWLSYPN*PSPSPF Trigger: AAATGGGGAGGGACTAGGGCAGTTTGGATAGCTCAA...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGAGGGCATTTCTGATGTaGCTCAGTGGGAAAACTTCA | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWRAFLM*LSGKTS Trigger: TGAAGTTTTCCCACTGAGTCACATCAGAAATGCCCT...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGGATGTAGGGCATTTCTaGTGTGACTCAGTGGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWDVGHF*CDSVGK Trigger: TTTTCCCACTGAGTCACATCAGAAATGCCCTACATC...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGTGGGGACACAGTCCATaGTGTGAAACTCTCTATGAA | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWWGHSP*CETLYE Trigger: TTCATAGAGAGTTTCACAGCATGGACTGTGTCCCCA...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR CAA 90 bp | GTGAAACTCTCTATGAAAGCTCAAAGGTTCACACAGGGCCTGGCCTaGCAACCTTGGTCTCTTCAACACCTAATAAGCTATAACTGGCCC | + |
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Preference number: 2 (lower is better) Translates to: VKLSMKAQRFTQGLA*QPWSLQHLISYNWP Trigger: GGGCCAGTTATAGCTTATTAGGTGTTGAAGAGACCAAGGTTGCAAGGCCAGGCCCTGTGTGAACCTTTGAGCTTTCATAGAGAGTTTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGTACATTCATCAGGGATaGCAAACTATAGGACATGAT | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWYIHQG*QTIGHD Trigger: ATCATGTCCTATAGTTTGTCATCCCTGATGAATGTA...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGGAAATGGATAGTAAGTaGTGTCCTCAAAATCAGAGT | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWEMDSK*CPQNQS Trigger: ACTCTGATTTTGAGGACATCACTTACTATCCATTTC...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGATTTTGACTAACCAATaGATGACAACACTGGATGAC | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWILTNQ*MTTLDD Trigger: GTCATCCAGTGTTGTCATGCATTGGTTAGTCAAAAT...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGACTTTCACCTCACCATaGCATCTCACTTCATTTATT | + |
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Preference number: 2 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWTFTSP*HLTSFI Trigger: AATAAATGAAGTGAGATGGCATGGTGAGGTGAAAGT...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR TCA 90 bp | CACATGAGGTTCATTATACTACTATTCTATAAAGCACTAAGAGTGCACCCATTTGCAGTCAACATTTACTaGGCCCTTACTTATATGCCA | + |
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Preference number: 2 (lower is better) Translates to: HMRFIILLFYKALRVHPFAVNIY*ALTYMP Trigger: TGGCATATAAGTAAGGGCTCAGTAAATGTTGACTGC...AAATGGGTGCACTCTTAGTGCTTTATAGAATAGTAGTATAATGAACCTCATGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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| 3UTR-3UTR GCA 90 bp | CACATGAGGTTCATTATACTACTATTCTATAAAGCACTAAGAGTGCACCCATTTTCTCCATCTTCATTCTaGCAATTCCATGAGATGCTC | + |
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Preference number: 2 (lower is better) Translates to: HMRFIILLFYKALRVHPFSPSSF*QFHEML Trigger: GAGCATCTCATGGAATTGGCAGAATGAAGATGGAGA...AAATGGGTGCACTCTTAGTGCTTTATAGAATAGTAGTATAATGAACCTCATGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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| 3UTR-3UTR GCA 90 bp | CACATGAGGTTCATTATACTACTATTCTATAAAGCACTAAGAGTGCACCCATTTCCAACGTGTGTCCTTTaGCCATGTGGAATTTTAATC | + |
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Preference number: 2 (lower is better) Translates to: HMRFIILLFYKALRVHPFPTCVL*PCGILI Trigger: GATTAAAATTCCACATGGGCAAAGGACACACGTTGG...AAATGGGTGCACTCTTAGTGCTTTATAGAATAGTAGTATAATGAACCTCATGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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| 3UTR-3UTR TCA 90 bp | TGTGTCCTTTGCCCATGTGGAATTTTAATCTTCTTTTACACTGACTTGCATAATATTCTGCCAATTCCATaGGATGCTCTTCTCAATATA | + |
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Preference number: 2 (lower is better) Translates to: CVLCPCGILIFFYTDLHNILPIP*DALLNI Trigger: TATATTGAGAAGAGCATCTCATGGAATTGGCAGAAT...ATTATGCAAGTCAGTGTAAAAGAAGATTAAAATTCCACATGGGCAAAGGACACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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| 3UTR-3UTR CAA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGACACAGGGCCTGGCCTaGCAACCTTGGTCTCTTCAA | + |
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Preference number: 3 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWTQGLA*QPWSLQ Trigger: TTGAAGAGACCAAGGTTGCAAGGCCAGGCCCTGTGT...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR-3UTR CAA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGAGGCACGAGAATCGCTaGAACCTGGGAGATGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWRHENR*NLGDGG Trigger: ACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCT...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR CCA 72 bp | GCTCAAAGGTTCACACAGGGCCTGGCCTTGCAACCTTaGTCTCTTCAACACCTAATAAGCTATAACTGGCCC | + |
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Preference number: 3 (lower is better) Translates to: AQRFTQGLALQP*SLQHLISYNWP Trigger: GGGCCAGTTATAGCTTATTAGGTGTTGAAGAGACCAAGGTTGCAAGGCCAGGCCCTGTGTGAACCTTTGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR TCA 72 bp | TCAGCAGGACCACCACAGAGTGAGATTGTATCTTGTTaGGCTATCCAAACTGCCCTAGTCCCTCCCCATTTT | + |
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Preference number: 3 (lower is better) Translates to: SAGPPQSEIVSC*AIQTALVPPHF Trigger: AAAATGGGGAGGGACTAGGGCAGTTTGGATAGCTCAACAAGATACAATCTCACTCTGTGGTGGTCCTGCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| CDS-3UTR CCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGGGGGGCCGGGAGTACTaGCCGAGCCGCCGCCACCTT | + |
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Preference number: 4 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWGGREY*PSRRHL Trigger: AAGGTGGCGGCGGCTCGGCCAGTACTCCCGGCCCCC...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 61% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| CDS-3UTR CCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGCCTCTCTCCCGCACCTaGGAGCCGCTGAGCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWPLSRT*EPLSLW Trigger: CCAGAGGCTCAGCGGCTCCCAGGTGCGGGAGAGAGG...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| CDS-3UTR CCA 90 bp | AGTATGGGTTTTCCAACTCAGGCAGTGACTCTGACACAGAGACATATTCCATGTGGGGGCCGGGAGTACTaGCCGAGCCGCCGCCACCTT | + |
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Preference number: 4 (lower is better) Translates to: SMGFPTQAVTLTQRHIPCGGREY*PSRRHL Trigger: AAGGTGGCGGCGGCTCGGCCAGTACTCCCGGCCCCC...ACATGGAATATGTCTCTGTGTCAGAGTCACTGCCTGAGTTGGAAAACCCATACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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| CDS-3UTR TCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGCAGTGCCTTGTGTGGTaGCTGGCATCTGGTAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWQCLVW*LASGRH Trigger: GTGCCTACCAGATGCCAGTCACCACACAAGGCACTG...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| CDS-3UTR TCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGGCACTGTACTCCTCTTaGCCTGCTGTGTCGAGAATA | + |
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Preference number: 4 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWALYSS*PAVSRI Trigger: TATTCTCGACACAGCAGGTCAAGAGGAGTACAGTGC...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| CDS-3UTR GCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGGTACTGGTCCCTCATTaGACTGTACTCCTCTTGACC | + |
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Preference number: 4 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWVLVPH*TVLLLT Trigger: GGTCAAGAGGAGTACAGTGCAATGAGGGACCAGTAC...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| CDS-3UTR CCA 90 bp | GGTTTTCCAACTCAGGCAGTGACTCTGACACAGAGACATATTCCATGTATCAAACATTTTCAGCAGGCCTaGGAGCCGCTGAGCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: GFPTQAVTLTQRHIPCIKHFQQA*EPLSLW Trigger: CCAGAGGCTCAGCGGCTCCCAGGCCTGCTGAAAATG...TTTGATACATGGAATATGTCTCTGTGTCAGAGTCACTGCCTGAGTTGGAAAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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| CDS-3UTR CCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGGGAATCCTCTATTGTTaGATCATATTCGTCCACAAA | + |
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Preference number: 4 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWGILYC*IIFVHK Trigger: TTTGTGGACGAATATGATCCAACAATAGAGGATTCC...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| CDS-3UTR CCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGATTATGTCTCTTGTTTaGGGATACCATATACCCAGT | + |
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Preference number: 4 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWIMSLV*GYHIPS Trigger: ACTGGGTATATGGTATCCCCAAACAAGAGACATAAT...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| 3UTR CAA 72 bp | TCTATGAAAGCTCAAAGGTTCACACAGGGCCTGGCCTaGCAACCTTGGTCTCTTCAACACCTAATAAGCTAT | + |
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Preference number: 4 (lower is better) Translates to: SMKAQRFTQGLA*QPWSLQHLISY Trigger: ATAGCTTATTAGGTGTTGAAGAGACCAAGGTTGCAAGGCCAGGCCCTGTGTGAACCTTTGAGCTTTCATAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| CDS-3UTR CCA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGATCGAAGAGTTTCAGTaGAATCGTAGCAAAACAATT | + |
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Preference number: 4 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWIEEFQ*NRSKTI Trigger: AATTGTTTTGCTACGATTCCACTGAAACTCTTCGAT...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| CDS-3UTR TCA 90 bp | AGTATGGGTTTTCCAACTCAGGCAGTGACTCTGACACAGAGACATATTCCATGTATTCTGCCAATTCCATaGGATGCTCTTCTCAATATA | + |
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Preference number: 4 (lower is better) Translates to: SMGFPTQAVTLTQRHIPCILPIP*DALLNI Trigger: TATATTGAGAAGAGCATCTCATGGAATTGGCAGAAT...ACATGGAATATGTCTCTGTGTCAGAGTCACTGCCTGAGTTGGAAAACCCATACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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| CDS-3UTR TCA 90 bp | GGTTTTCCAACTCAGGCAGTGACTCTGACACAGAGACATATTCCATGTATCAAACTAAATGTTAAGATATaGAAGAGCTGGTTGGTACAC | + |
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Preference number: 4 (lower is better) Translates to: GFPTQAVTLTQRHIPCIKLNVKI*KSWLVH Trigger: GTGTACCAACCAGCTCTTTCATATCTTAACATTTAG...TTTGATACATGGAATATGTCTCTGTGTCAGAGTCACTGCCTGAGTTGGAAAACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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| CDS-3UTR GCA 90 bp | GGTTTTCCAACTCAGGCAGTGACTCTGACACAGAGACATATTCCATGTATCAAAAATGTTCACGACAAATaGCCCACTTTCAATGTAACA | + |
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Preference number: 4 (lower is better) Translates to: GFPTQAVTLTQRHIPCIKNVHDK*PTFNVT Trigger: TGTTACATTGAAAGTGGGGCATTTGTCGTGAACATT...TTTGATACATGGAATATGTCTCTGTGTCAGAGTCACTGCCTGAGTTGGAAAACC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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| CDS-3UTR GCA 90 bp | TGTGTCCTTTGCCCATGTGGAATTTTAATCTTCTTTTACACTGACTTGCATAATCCAACGTGTGTCCTTTaGCCATGTGGAATTTTAATC | + |
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Preference number: 4 (lower is better) Translates to: CVLCPCGILIFFYTDLHNPTCVL*PCGILI Trigger: GATTAAAATTCCACATGGGCAAAGGACACACGTTGG...ATTATGCAAGTCAGTGTAAAAGAAGATTAAAATTCCACATGGGCAAAGGACACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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| CDS-3UTR CAA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGTGCACTGTACTCCTCTaGACCTGCTGTGTCGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWCTVLL*TCCVEN Trigger: ATTCTCGACACAGCAGGTCAAGAGGAGTACAGTGCA...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000256078.10 ENST00000311936.8 |
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| CDS-3UTR CAA 90 bp | CTCTTGTTTGGGGATACCATATACCCAGTGCCTTGTGTGGTGACTGGCATCTGGCATCAACACCCTGTCTaGTCTTTGCTGATGTTTCAA | + |
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Preference number: 5 (lower is better) Translates to: LLFGDTIYPVPCVVTGIWHQHPV*SLLMFQ Trigger: TTGAAACATCAGCAAAGACAAGACAGGGTGTTGATG...CCAGATGCCAGTCACCACACAAGGCACTGGGTATATGGTATCCCCAAACAAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311936.8 |
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| CDS-3UTR CAA 90 bp | TGTGTCCTTTGCCCATGTGGAATTTTAATCTTCTTTTACACTGACTTGCATAATGCCAACGTGTGTCCTTaGCCCATGTGGAATTTTAAT | + |
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Preference number: 5 (lower is better) Translates to: CVLCPCGILIFFYTDLHNANVCP*PMWNFN Trigger: ATTAAAATTCCACATGGGCAAAGGACACACGTTGGC...ATTATGCAAGTCAGTGTAAAAGAAGATTAAAATTCCACATGGGCAAAGGACACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000556131.1 |
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