RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KDM5D (Homo sapiens)

Ensembl gene IDs: ENSG00000012817

Ensembl transcript IDs: ENST00000317961.9, ENST00000382806.6, ENST00000415360.1, ENST00000440077.5, ENST00000447300.1, ENST00000469599.6, ENST00000478891.1, ENST00000485154.1, ENST00000492117.1, ENST00000541639.5

Found 367 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTaGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGG +
Preference number: 1 (lower is better)
Translates to: ASRNVAGKTLLSIGV*TLRTNLLTVTLGER
Trigger: CCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
3UTR TCA 90 bp CACTTGGGCTTCCTCAAGATTTGTTTGTCCCTATTCAGACTAGAATaGAACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTT +
Preference number: 1 (lower is better)
Translates to: HLGFLKICLSLFRLE*NWFRKSLLYASRNV
Trigger: AACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGTTTCATTCTAGTCTGAATAGGGACAAACAAATCTTGAGGAAGCCCAAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
3UTR-3UTR TCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAGCAAAAAGCTCCTTCTaGGGTCCAGGCCAGGAGATA +
Preference number: 2 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRAKSSF*GPGQEI
Trigger: TATCTCCTGGCCTGGACCTCAGAAGGAGCTTTTTGC...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
3UTR-3UTR TCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTGCAAAAAGCTCCTTCTaGGGTCCAGGCCAGGAGATA +
Preference number: 2 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTAKSSF*GPGQEI
Trigger: TATCTCCTGGCCTGGACCTCAGAAGGAGCTTTTTGC...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
3UTR-3UTR TCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGGCAAAAAGCTCCTTCTaGGGTCCAGGCCAGGAGATA +
Preference number: 2 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEAKSSF*GPGQEI
Trigger: TATCTCCTGGCCTGGACCTCAGAAGGAGCTTTTTGC...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
3UTR-3UTR CCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACCTGAGCATCGGGGTGTaGACTTTACGAACCAACCTT +
Preference number: 2 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHLSIGV*TLRTNL
Trigger: AAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAG...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
3UTR CAA 90 bp AGGGGAGGCAACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATaGCCTGCTTACTGTGAAGTATGTGAACAATTTGTGACTCAGAAC +
Preference number: 2 (lower is better)
Translates to: RGGNLRKVYNCPDIG*PAYCEVCEQFVTQN
Trigger: GTTCTGAGTCACAAATTGTTCACATACTTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTTGCCTCCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR-3UTR CCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTCTGAGCATCGGGGTGTaGACTTTACGAACCAACCTT +
Preference number: 2 (lower is better)
Translates to: FYSTRSSPSIALLLGKLILSIGV*TLRTNL
Trigger: AAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAG...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR-3UTR GCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTGTTTTCTATTGCTGGTaGTGGGTCAACTGGACATCC +
Preference number: 2 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIVFYCW*WVNWTS
Trigger: GGATGTCCAGTTGACCCAGCACCAGCAATAGAAAAC...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR-3UTR CCA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAAAAGTACACTGTACTTaGACAGGTGAAGCAATTTCT +
Preference number: 2 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCEKVHCT*TGEAIS
Trigger: AGAAATTGCTTCACCTGTCCAAGTACAGTGTACTTT...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR-3UTR TCA 90 bp TCTCATCATGCCTCATCAGAATTTTCCGTTAACAAGTGTCAGAGAATCTGTAATAGATTCAATCCAGGATaGCAGAATGCGTTCACCTTT +
Preference number: 2 (lower is better)
Translates to: SHHASSEFSVNKCQRICNRFNPG*QNAFTF
Trigger: AAAGGTGAACGCATTCTGTCATCCTGGATTGAATCT...ATTACAGATTCTCTGACACTTGTTAACGGAAAATTCTGATGAGGCATGATGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR-3UTR GCA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGATAACTTGTGTCAGTaGAACTTAATCAGATTTAGG +
Preference number: 2 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCEDNLCQ*NLIRFR
Trigger: CCTAAATCTGATTAAGTTGCACTGACACAAGTTATC...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR TCA 72 bp TGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTaGGCATCGGGGTGTGGACTTTACGAACCAACCTTT +
Preference number: 3 (lower is better)
Translates to: CMLAGMLLARHF*ASGCGLYEPTF
Trigger: AAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
3UTR CCA 72 bp AATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTaGACTTTACGAACCAACCTTTTAACAGTAACTCTA +
Preference number: 3 (lower is better)
Translates to: NVAGKTLLSIGV*TLRTNLLTVTL
Trigger: TAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
3UTR TCA 72 bp TTTCTATTGCTGGTGCTGGGTCAACTGGACATCCTTTaGGAAAACATTAACCTTGGCCTAAGTCTCATGTAT +
Preference number: 3 (lower is better)
Translates to: FLLLVLGQLDIL*ENINLGLSLMY
Trigger: ATACATGAGACTTAGGCCAAGGTTAATGTTTTCTCAAAGGATGTCCAGTTGACCCAGCACCAGCAATAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR-3UTR CAA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTAAGTTAACTCAGATATaGGCACATGCAAGTCCAGCC +
Preference number: 3 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIKLTQI*AHASPA
Trigger: GGCTGGACTTGCATGTGCCAATATCTGAGTTAACTT...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR-3UTR CAA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAATTGAGGGAGATAACTaGTGTCAGTGCAACTTAATC +
Preference number: 3 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCEIEGDN*CQCNLI
Trigger: GATTAAGTTGCACTGACACAAGTTATCTCCCTCAAT...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR GCA 72 bp GATGCAATGCAACAAGTTAACTCAGATATTGGCACATaGAAGTCCAGCCAACAGATTTTCAATAAAAAGCAC +
Preference number: 3 (lower is better)
Translates to: DAMQQVNSDIGT*KSSQQIFNKKH
Trigger: GTGCTTTTTATTGAAAATCTGTTGGCTGGACTTGCATGTGCCAATATCTGAGTTAACTTGTTGCATTGCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR CCA 72 bp ATCTCAGGATTTTCTATATATTTTACCTGGTCCCTATaGTGTGGTAAGGTAAAGTACACTGTACTTGGACAG +
Preference number: 3 (lower is better)
Translates to: ISGFSIYFTWSL*CGKVKYTVLGQ
Trigger: CTGTCCAAGTACAGTGTACTTTACCTTACCACACCATAGGGACCAGGTAAAATATATAGAAAATCCTGAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR TCA 72 bp GAATTAGAATTATCGCAGAGAACACTGAATGGCCTATaGAATTCAATTTTTGCTGCAGATTTCGTCATGTTT +
Preference number: 3 (lower is better)
Translates to: ELELSQRTLNGL*NSIFAADFVMF
Trigger: AAACATGACGAAATCTGCAGCAAAAATTGAATTTCATAGGCCATTCAGTGTTCTCTGCGATAATTCTAATTC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR TCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAACCAGAGAGCCCCTGTaGGCAGAAGGGGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRTREPL*AEGARA
Trigger: GGCCCTGGCCCCTTCTGCTCACAGGGGCTCTCTGGT...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTACCAGAGAGCCCCTGTaGGCAGAAGGGGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTTREPL*AEGARA
Trigger: GGCCCTGGCCCCTTCTGCTCACAGGGGCTCTCTGGT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTCCGGGCCCTGCAGTGTaGTACGAGCCGTCTCACTCC +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTPGPAV*YEPSHS
Trigger: GGAGTGAGACGGCTCGTACCACACTGCAGGGCCCGG...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGACTCGCTCAGCCTCCGTaGCGCCCTTCTCCAAAAGGG +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRLAQPP*RPSPKG
Trigger: CCCTTTTGGAGAAGGGCGTCACGGAGGCTGAGCGAG...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTACTGCAAAAGGAGGCTaGCAATCCGCGGGTGGGCGG +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTTAKGG*QSAGGR
Trigger: CCGCCCACCCGCGGATTGGCAGCCTCCTTTTGCAGT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGACAGGGGAGCCCGGATTaGCTCAGGCAGCTCCAACAC +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRQGSPD*LRQLQH
Trigger: GTGTTGGAGCTGCCTGAGGCAATCCGGGCTCCCCTG...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGACCAGAGAGCCCCTGTaGGCAGAAGGGGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGETREPL*AEGARA
Trigger: GGCCCTGGCCCCTTCTGCTCACAGGGGCTCTCTGGT...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGATTACAGCCACCATCTTaGCCTCCGGGCCCTGCAGTG +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRLQPPS*PPGPAV
Trigger: CACTGCAGGGCCCGGAGGTCAAGATGGTGGCTGTAA...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTACCAGCCCCAGGACTTaGGCAATACAAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTTSPRT*AIQAST
Trigger: GGTGGAGGCTTGTATTGCTCAAGTCCTGGGGCTGGT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGATCAACGTTTCTACCCTaGTCCACCTTCTGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRSTFLP*STFCRR
Trigger: GCGGCGGCAGAAGGTGGATCAGGGTAGAAACGTTGA...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCGCACGGGCAGCCTCTaGAGGGCAACCAGCAAGGCT +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRERTGSL*RATSKA
Trigger: AGCCTTGCTGGTTGCCCTGCAGAGGCTGCCCGTGCG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTTCCATCCTGGCCACCTaGCCACTGACCAGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLSILAT*PLTSPR
Trigger: CCTGGGGCTGGTCAGTGGTCAGGTGGCCAGGATGGA...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGATCTTCTCGGCCCACCTaGGACATAATCCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRSSRPT*DIIPEL
Trigger: GAGCTCAGGGATTATGTCTCAGGTGGGCCGAGAAGA...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTCTGGCAAGACACTTCTaGGCATCGGGGTGTGGACTT +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTLARHF*ASGCGL
Trigger: AAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAG...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTACTTCATCTAGCCATTaGGCCTGCTCCACCTGCTGC +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTTSSSH*ACSTCC
Trigger: GCAGCAGGTGGAGCAGGCGCAATGGCTAGATGAAGT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAACTTCATCTAGCCATTaGGCCTGCTCCACCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRTSSSH*ACSTCC
Trigger: GCAGCAGGTGGAGCAGGCGCAATGGCTAGATGAAGT...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAGAAGGGGCCAGGGCCTaGTTCACTTCATCTAGCCAT +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLREGARA*FTSSSH
Trigger: ATGGCTAGATGAAGTGAAGCAGGCCCTGGCCCCTTC...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGTTGACCTCCGGGCCCTaGAGTGTGGTACGAGCCGTC +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGELTSGP*SVVRAV
Trigger: GACGGCTCGTACCACACTGCAGGGCCCGGAGGTCAA...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGTTGACCTCCGGGCCCTaGAGTGTGGTACGAGCCGTC +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRELTSGP*SVVRAV
Trigger: GACGGCTCGTACCACACTGCAGGGCCCGGAGGTCAA...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTAGTCAAGGTCAGCTGTaGAGTGTCCATCCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTSQGQL*SVHPGH
Trigger: GTGGCCAGGATGGACACTCCACAGCTGACCTTGACT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAGTGGATGCTTCTGCCTaGCCTCCAGGCAGAAATGAG +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRVDASA*PPGRNE
Trigger: CTCATTTCTGCCTGGAGGCCAGGCAGAAGCATCCAC...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAAGTGAGACTGGGCTTTaGAGAGGTGAGGAGATGGGG +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRSETGL*RGEEMG
Trigger: CCCCATCTCCTCACCTCTCCAAAGCCCAGTCTCACT...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCCGGGCCCTGCAGTGTaGTACGAGCCGTCTCACTCC +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLPGPAV*YEPSHS
Trigger: GGAGTGAGACGGCTCGTACCACACTGCAGGGCCCGG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAGTCGACTGTAGCTGCTaGACTTTGAAGGCTGCACAG +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRVDCSC*TLKAAQ
Trigger: CTGTGCAGCCTTCAAAGTTCAGCAGCTACAGTCGAC...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTCGCTCAGCCTCCGTaGCGCCCTTCTCCAAAAGGG +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLLAQPP*RPSPKG
Trigger: CCCTTTTGGAGAAGGGCGTCACGGAGGCTGAGCGAG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGTCGGAGAAGAGGCCATaGGGGATGGTGCCAGTGGAC +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRSEKRP*GMVPVD
Trigger: GTCCACTGGCACCATCCCTCATGGCCTCTTCTCCGA...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGTCGGAGAAGAGGCCATaGGGGATGGTGCCAGTGGAC +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRESEKRP*GMVPVD
Trigger: GTCCACTGGCACCATCCCTCATGGCCTCTTCTCCGA...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGTTACAGCCACCATCTTaGCCTCCGGGCCCTGCAGTG +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRELQPPS*PPGPAV
Trigger: CACTGCAGGGCCCGGAGGTCAAGATGGTGGCTGTAA...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGTATGTGAACACTGCAAAAGGAGGCTaGCAATCCGCGGGTGGGCGG +
Preference number: 4 (lower is better)
Translates to: RCTTVLTLDCLLTVKYVNTAKGG*QSAGGR
Trigger: CCGCCCACCCGCGGATTGGCAGCCTCCTTTTGCAGT...GTTCACATACTTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGGGCAGGCTGCCCATCTaGTCAAGAAGGACCCGGAGT +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRGRLPI*SRRTRS
Trigger: ACTCCGGGTCCTTCTTGAGCAGATGGGCAGCCTGCC...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGACCGGCTACGCTTGGTaGTGTCTGAGCCAGCGTCTG +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGETGYAW*CLSQRL
Trigger: CAGACGCTGGCTCAGACAGCACCAAGCGTAGCCGGT...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGACCGGCTACGCTTGGTaGTGTCTGAGCCAGCGTCTG +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRETGYAW*CLSQRL
Trigger: CAGACGCTGGCTCAGACAGCACCAAGCGTAGCCGGT...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCAGGGGAGCCCGGATTaGCTCAGGCAGCTCCAACAC +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLQGSPD*LRQLQH
Trigger: GTGTTGGAGCTGCCTGAGGCAATCCGGGCTCCCCTG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGCTGCCAATCCGCGGGTaGGCGGATTTTGCAGATGCC +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGELPIRG*ADFADA
Trigger: GGCATCTGCAAAATCCGCCCACCCGCGGATTGGCAG...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTGCCAATGTTTTTGCCTaGTGGGTAGTGGAGACGCTG +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTANVFA*WVVETL
Trigger: CAGCGTCTCCACTACCCACCAGGCAAAAACATTGGC...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317961.9
ENST00000541639.5
CDS-3UTR CCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCCCCAATCTGATGCATaGCACAGGGCAGGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRPQSDA*HRAGCP
Trigger: TGGGCAGCCTGCCCTGTGCCATGCATCAGATTGGGG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTCCCAGCGCTCTGCAATaGTCAGTAGTTCTTGCAGCT +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTPSALQ*SVVLAA
Trigger: AGCTGCAAGAACTACTGACCATTGCAGAGCGCTGGG...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGACCAGCCCCAGGACTTaGGCAATACAAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRTSPRT*AIQAST
Trigger: GGTGGAGGCTTGTATTGCTCAAGTCCTGGGGCTGGT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACACCAGCCCCAGGACTTaGGCAATACAAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHTSPRT*AIQAST
Trigger: GGTGGAGGCTTGTATTGCTCAAGTCCTGGGGCTGGT...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGTCCATCCTGGCCACCTaGCCACTGACCAGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKSILAT*PLTSPR
Trigger: CCTGGGGCTGGTCAGTGGTCAGGTGGCCAGGATGGA...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR TCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCATCCATCCTGGCCACCTaGCCACTGACCAGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISSILAT*PLTSPR
Trigger: CCTGGGGCTGGTCAGTGGTCAGGTGGCCAGGATGGA...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTGTTCCAGGACATCCTTaGCATCCCCAATCTGATGCA +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTVPGHP*HPQSDA
Trigger: TGCATCAGATTGGGGATGTCAAGGATGTCCTGGAAC...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACGAGGAGATGGGGCACTaGCACACACTGCCCATGGAA +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHEEMGH*HTLPME
Trigger: TTCCATGGGCAGTGTGTGTCAGTGCCCCATCTCCTC...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGGGTGGGAGGACTGCTTaGGCCCAGAAGCTTGAGATC +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEGGRTA*AQKLEI
Trigger: GATCTCAAGCTTCTGGGCTCAAGCAGTCCTCCCACC...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541639.5
CDS-3UTR GCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTGGCACAGGGCAGGCTaGCCATCTGCTCAAGAAGGA +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHWHRAG*PSAQEG
Trigger: TCCTTCTTGAGCAGATGGGCAGCCTGCCCTGTGCCA...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGGCTGGTGGATGCTTCTaGCTGGCCTCCAGGCAGAAA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRAGGCF*LASRQK
Trigger: TTTCTGCCTGGAGGCCAGGCAGAAGCATCCACCAGC...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGGCTGGTGGATGCTTCTaGCTGGCCTCCAGGCAGAAA +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEAGGCF*LASRQK
Trigger: TTTCTGCCTGGAGGCCAGGCAGAAGCATCCACCAGC...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACGCTGGTGGATGCTTCTaGCTGGCCTCCAGGCAGAAA +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHAGGCF*LASRQK
Trigger: TTTCTGCCTGGAGGCCAGGCAGAAGCATCCACCAGC...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAATGTGGCTGGTGGATaGTTCTGCCTGGCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRNVAGG*FCLASR
Trigger: CCTGGAGGCCAGGCAGAAGCATCCACCAGCCACATT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGACTCTCTCCAGGAATGTaGTGTCAATACCTGCAGCTC +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRLSPGM*CQYLQL
Trigger: GAGCTGCAGGTATTGACAGCACATTCCTGGAGAGAG...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGTATGTGAACCTGCCAATCCGCGGGTaGGCGGATTTTGCAGATGCC +
Preference number: 4 (lower is better)
Translates to: RCTTVLTLDCLLTVKYVNLPIRG*ADFADA
Trigger: GGCATCTGCAAAATCCGCCCACCCGCGGATTGGCAG...GTTCACATACTTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGCCAATCCGCGGGTaGGCGGATTTTGCAGATGCC +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLLPIRG*ADFADA
Trigger: GGCATCTGCAAAATCCGCCCACCCGCGGATTGGCAG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTGTTTGTGCGGACAACTaGCACACCATGGGACATCAA +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTVCADN*HTMGHQ
Trigger: TTGATGTCCCATGGTGTGCCAGTTGTCCGCACAAAC...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTCTGAGCATCGGGGTGTaGACTTTACGAACCAACCTT +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTLSIGV*TLRTNL
Trigger: AAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAG...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCACTCGCTCAGCCTCCGTaGCGCCCTTCTCCAAAAGGG +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISLAQPP*RPSPKG
Trigger: CCCTTTTGGAGAAGGGCGTCACGGAGGCTGAGCGAG...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGAGGAGATGGGGCACTaGCACACACTGCCCATGGAA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLEEMGH*HTLPME
Trigger: TTCCATGGGCAGTGTGTGTCAGTGCCCCATCTCCTC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGTATGTGAACTCAACGTTTCTACCCTaGTCCACCTTCTGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: RCTTVLTLDCLLTVKYVNSTFLP*STFCRR
Trigger: GCGGCGGCAGAAGGTGGATCAGGGTAGAAACGTTGA...GTTCACATACTTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR TCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTTCAACGTTTCTACCCTaGTCCACCTTCTGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLSTFLP*STFCRR
Trigger: GCGGCGGCAGAAGGTGGATCAGGGTAGAAACGTTGA...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGTCTTCTCGGCCCACCTaGGACATAATCCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRESSRPT*DIIPEL
Trigger: GAGCTCAGGGATTATGTCTCAGGTGGGCCGAGAAGA...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCTGGCAAGACACTTCTaGGCATCGGGGTGTGGACTT +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRLARHF*ASGCGL
Trigger: AAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAGATGCCAGACTTCTCTaGTATGGGCCTTATTTTCGC +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRDARLL*YGPYFR
Trigger: GCGAAAATAAGGCCCATAGCAGAGAAGTCTGGCATC...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAACTGCAAAAGGAGGCTaGCAATCCGCGGGTGGGCGG +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISTAKGG*QSAGGR
Trigger: CCGCCCACCCGCGGATTGGCAGCCTCCTTTTGCAGT...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCCCACCGACGATCCTTaGAGATGGCTTCATAGCCAC +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREPTDDP*RWLHSH
Trigger: GTGGCTATGAAGCCATCTGCAAGGATCGTCGGTGGG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317961.9
ENST00000541639.5
CDS-3UTR GCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACCCCACCGACGATCCTTaGAGATGGCTTCATAGCCAC +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHPTDDP*RWLHSH
Trigger: GTGGCTATGAAGCCATCTGCAAGGATCGTCGGTGGG...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317961.9
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGATTCCCACCTCCACTTTaGTCATCCTTCACCGTAACA +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRFPPPL*SSFTVT
Trigger: TGTTACGGTGAAGGATGAGCAAAGTGGAGGTGGGAA...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTGGCTCTAGGCTCAAGTaGTGCTTGAGCAATGTTGAT +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTGSRLK*CLSNVD
Trigger: ATCAACATTGCTCAAGCAGCACTTGAGCCTAGAGCC...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACATCACCTCCTCCAAATaGTCTGCTGCCAGGGAGGGT +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHITSSK*SAAREG
Trigger: ACCCTCCCTGGCAGCAGAGCATTTGGAGGAGGTGAT...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGATCACCTCCTCCAAATaGTCTGCTGCCAGGGAGGGT +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEITSSK*SAAREG
Trigger: ACCCTCCCTGGCAGCAGAGCATTTGGAGGAGGTGAT...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGGCGGTAGTGTTCAATaGACTGGCGTCCAGCAGGTA +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREGGSVQ*TGVQQV
Trigger: TACCTGCTGGACGCCAGTGCATTGAACACTACCGCC...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACGAAGGGGCCAGGGCCTaGTTCACTTCATCTAGCCAT +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHEGARA*FTSSSH
Trigger: ATGGCTAGATGAAGTGAAGCAGGCCCTGGCCCCTTC...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTAATGTGGCTGGTGGATaGTTCTGCCTGGCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLNVAGG*FCLASR
Trigger: CCTGGAGGCCAGGCAGAAGCATCCACCAGCCACATT...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTCGCACGGGCAGCCTCTaGAGGGCAACCAGCAAGGCT +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIRTGSL*RATSKA
Trigger: AGCCTTGCTGGTTGCCCTGCAGAGGCTGCCCGTGCG...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGTTTCTGGCACGGTCTTaGCAGCCAATGGCCCTCTCT +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRFLARS*QPMALS
Trigger: AGAGAGGGCCATTGGCTGGCAAGACCGTGCCAGAAA...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCACAGGGGAGCCCGGATTaGCTCAGGCAGCTCCAACAC +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISQGSPD*LRQLQH
Trigger: GTGTTGGAGCTGCCTGAGGCAATCCGGGCTCCCCTG...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTGTTTTCTATTGCTGGTaGTGGGTCAACTGGACATCC +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTVFYCW*WVNWTS
Trigger: GGATGTCCAGTTGACCCAGCACCAGCAATAGAAAAC...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTCCAAGCCCATCATTTTaGGACCTGGCCCATATATCT +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTPSPSF*DLAHIS
Trigger: AGATATATGGGCCAGGTCCCAAAATGATGGGCTTGG...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGTCAAGGTCAGCTGTaGAGTGTCCATCCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRSQGQL*SVHPGH
Trigger: GTGGCCAGGATGGACACTCCACAGCTGACCTTGACT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGTGTCCACAGAAGGGCTaGAGGCTATCTTGGCACCCA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRCPQKG*RLSWHP
Trigger: TGGGTGCCAAGATAGCCTCCAGCCCTTCTGTGGACA...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTGTCCACAGAAGGGCTaGAGGCTATCTTGGCACCCA +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHCPQKG*RLSWHP
Trigger: TGGGTGCCAAGATAGCCTCCAGCCCTTCTGTGGACA...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACGTGGATGCTTCTGCCTaGCCTCCAGGCAGAAATGAG +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHVDASA*PPGRNE
Trigger: CTCATTTCTGCCTGGAGGCCAGGCAGAAGCATCCAC...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCCAATGTGGCTGGTaGATGCTTCTGCCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHFQCGW*MLLPGL
Trigger: GAGGCCAGGCAGAAGCATCCACCAGCCACATTGGAA...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGAGTGAGACTGGGCTTTaGAGAGGTGAGGAGATGGGG +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRESETGL*RGEEMG
Trigger: CCCCATCTCCTCACCTCTCCAAAGCCCAGTCTCACT...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGTGAGACTGGGCTTTaGAGAGGTGAGGAGATGGGG +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGESETGL*RGEEMG
Trigger: CCCCATCTCCTCACCTCTCCAAAGCCCAGTCTCACT...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACCCTCTGGTCTGGGTTTaGCCTGTAGCTGTTGGCGAA +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHPLVWV*PVAVGE
Trigger: TTCGCCAACAGCTACAGGCCAAACCCAGACCAGAGG...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCCTCTGGTCTGGGTTTaGCCTGTAGCTGTTGGCGAA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRPLVWV*PVAVGE
Trigger: TTCGCCAACAGCTACAGGCCAAACCCAGACCAGAGG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGAGGCCTCCTCTGGTCTaGGTTTGGCCTGTAGCTGTT +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRERPPLV*VWPVAV
Trigger: AACAGCTACAGGCCAAACCCAGACCAGAGGAGGCCT...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTAAGGGCTGTGGTCTGTaGAAGGTGTCAGGAACATAT +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTKGCGL*KVSGTY
Trigger: ATATGTTCCTGACACCTTCCACAGACCACAGCCCTT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACGTCGACTGTAGCTGCTaGACTTTGAAGGCTGCACAG +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHVDCSC*TLKAAQ
Trigger: CTGTGCAGCCTTCAAAGTTCAGCAGCTACAGTCGAC...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGTCGACTGTAGCTGCTaGACTTTGAAGGCTGCACAG +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREVDCSC*TLKAAQ
Trigger: CTGTGCAGCCTTCAAAGTTCAGCAGCTACAGTCGAC...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGACTGAGATGTCTGCATTaGTGTGACAGAGAACAGACT +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRLRCLH*CDREQT
Trigger: AGTCTGTTCTCTGTCACATCAATGCAGACATCTCAG...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGTCTGTTCCCCTTCCTTaGAGGCCACAATCACAGAGC +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGESVPLP*RPQSQS
Trigger: GCTCTGTGATTGTGGCCTTCAAGGAAGGGGAACAGA...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCATCGGAGAAGAGGCCATaGGGGATGGTGCCAGTGGAC +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISSEKRP*GMVPVD
Trigger: GTCCACTGGCACCATCCCTCATGGCCTCTTCTCCGA...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGGCTCCGAGCCCTTTTTaGCTGAAGCTCCTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRAPSPF*LKLLLN
Trigger: GTTCAACAGGAGCTTCAGTCAAAAAGGGCTCGGAGC...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACGCTCCGAGCCCTTTTTaGCTGAAGCTCCTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHAPSPF*LKLLLN
Trigger: GTTCAACAGGAGCTTCAGTCAAAAAGGGCTCGGAGC...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGGCAAAAAGCTCCTTCTaGGGTCCAGGCCAGGAGATA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRAKSSF*GPGQEI
Trigger: TATCTCCTGGCCTGGACCTCAGAAGGAGCTTTTTGC...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGGGAGCCAATGTTTTTaGCTGGTGGGTAGTGGAGAC +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREGSQCF*LVGSGD
Trigger: GTCTCCACTACCCACCAGGCAAAAACATTGGCTCCC...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000317961.9
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGATCTAGGCTCAAGTGCTaGTTGAGCAATGTTGATGAC +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRSRLKC*LSNVDD
Trigger: GTCATCAACATTGCTCAAGCAGCACTTGAGCCTAGA...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGATGCTGAGAAAACCATaGCCACGTACAGCCAGGGCA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRMLRKP*PRTARA
Trigger: TGCCCTGGCTGTACGTGGGCATGGTTTTCTCAGCAT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCTCCAAATGCTCTGCTaGCAGGGAGGGTACACCATA +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRELQMLC*QGGYTI
Trigger: TATGGTGTACCCTCCCTGGCAGCAGAGCATTTGGAG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGTATGTGAACATCACCTCCTCCAAATaGTCTGCTGCCAGGGAGGGT +
Preference number: 4 (lower is better)
Translates to: RCTTVLTLDCLLTVKYVNITSSK*SAAREG
Trigger: ACCCTCCCTGGCAGCAGAGCATTTGGAGGAGGTGAT...GTTCACATACTTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGCTGCACACTGGTTTGTaGGGACAACTGGCACACCAT +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGELHTGL*GQLAHH
Trigger: ATGGTGTGCCAGTTGTCCGCACAAACCAGTGTGCAG...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCTGCACACTGGTTTGTaGGGACAACTGGCACACCAT +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRLHTGL*GQLAHH
Trigger: ATGGTGTGCCAGTTGTCCGCACAAACCAGTGTGCAG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCTGCACACTGGTTTGTaGGGACAACTGGCACACCAT +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRELHTGL*GQLAHH
Trigger: ATGGTGTGCCAGTTGTCCGCACAAACCAGTGTGCAG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGGCGGTAGTGTTCAATaGACTGGCGTCCAGCAGGTA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLGGSVQ*TGVQQV
Trigger: TACCTGCTGGACGCCAGTGCATTGAACACTACCGCC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGGGCAGGCTGCCCATCTaGTCAAGAAGGACCCGGAGT +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKGRLPI*SRRTRS
Trigger: ACTCCGGGTCCTTCTTGAGCAGATGGGCAGCCTGCC...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAACCGGCTACGCTTGGTaGTGTCTGAGCCAGCGTCTG +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISTGYAW*CLSQRL
Trigger: CAGACGCTGGCTCAGACAGCACCAAGCGTAGCCGGT...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGATGCAAACTGTACTCCTaGGTAGCCTGTTCAAATCCA +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRCKLYS*VACSNP
Trigger: TGGATTTGAACAGGCTACCCAGGAGTACAGTTTGCA...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGGAGATCCAACGTCTCTaGGAAGGCAGCCATCTTGCA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSREIQRL*EGSHLA
Trigger: TGCAAGATGGCTGCCTTCCCAGAGACGTTGGATCTC...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCACCCCAATCTGATGCATaGCACAGGGCAGGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISPQSDA*HRAGCP
Trigger: TGGGCAGCCTGCCCTGTGCCATGCATCAGATTGGGG...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGTATGTGAACTGTCCACAGAAGGGCTaGAGGCTATCTTGGCACCCA +
Preference number: 4 (lower is better)
Translates to: RCTTVLTLDCLLTVKYVNCPQKG*RLSWHP
Trigger: TGGGTGCCAAGATAGCCTCCAGCCCTTCTGTGGACA...GTTCACATACTTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTAGGCCTCCTCTGGTCTaGGTTTGGCCTGTAGCTGTT +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLRPPLV*VWPVAV
Trigger: AACAGCTACAGGCCAAACCCAGACCAGAGGAGGCCT...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGGTCAGAGCCCTTTCCTaGAGCCATGTTCTCAGGACT +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEVRALS*SHVLRT
Trigger: AGTCCTGAGAACATGGCTCCAGGAAAGGGCTCTGAC...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACGTCAGAGCCCTTTCCTaGAGCCATGTTCTCAGGACT +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHVRALS*SHVLRT
Trigger: AGTCCTGAGAACATGGCTCCAGGAAAGGGCTCTGAC...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTTCTGTTCCCCTTCCTTaGAGGCCACAATCACAGAGC +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLSVPLP*RPQSQS
Trigger: GCTCTGTGATTGTGGCCTTCAAGGAAGGGGAACAGA...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTAGATTCAATCCAGGATaGCAGAATGCGTTCACCTTT +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTRFNPG*QNAFTF
Trigger: AAAGGTGAACGCATTCTGTCATCCTGGATTGAATCT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGGGCGGATTTTGCAGATaGCAGACTTCTCTGCTATGG +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRGGFCR*QTSLLW
Trigger: CCATAGCAGAGAAGTCTGGCATCTGCAAAATCCGCC...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGTATGTGAACGGGAGCCAATGTTTTTaGCTGGTGGGTAGTGGAGAC +
Preference number: 4 (lower is better)
Translates to: RCTTVLTLDCLLTVKYVNGSQCF*LVGSGD
Trigger: GTCTCCACTACCCACCAGGCAAAAACATTGGCTCCC...GTTCACATACTTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTATGCTGAGAAAACCATaGCCACGTACAGCCAGGGCA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLMLRKP*PRTARA
Trigger: TGCCCTGGCTGTACGTGGGCATGGTTTTCTCAGCAT...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTCCAAATGCTCTGCTaGCAGGGAGGGTACACCATA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLLQMLC*QGGYTI
Trigger: TATGGTGTACCCTCCCTGGCAGCAGAGCATTTGGAG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGTGGCACAGGGCAGGCTaGCCATCTGCTCAAGAAGGA +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKWHRAG*PSAQEG
Trigger: TCCTTCTTGAGCAGATGGGCAGCCTGCCCTGTGCCA...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAACTTCATCTAGCCATTaGGCCTGCTCCACCTGCTGC +
Preference number: 4 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCETSSSH*ACSTCC
Trigger: GCAGCAGGTGGAGCAGGCGCAATGGCTAGATGAAGT...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAAATGTGGCTGGTGGATaGTTCTGCCTGGCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISNVAGG*FCLASR
Trigger: CCTGGAGGCCAGGCAGAAGCATCCACCAGCCACATT...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTAGCAATCCAAGCTTGTaGCTTAGTCAGAGCTTCTTT +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTSNPSL*LSQSFF
Trigger: AAAGAAGCTCTGACTAAGGCACAAGCTTGGATTGCT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACCTCTCTCCAGGAATGTaGTGTCAATACCTGCAGCTC +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHLSPGM*CQYLQL
Trigger: GAGCTGCAGGTATTGACAGCACATTCCTGGAGAGAG...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGATCAGATATTGGCACATaGAAGTCCAGCCAACAGATT +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRSDIGT*KSSQQI
Trigger: AATCTGTTGGCTGGACTTGCATGTGCCAATATCTGA...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGATGAGAGTGACAAGCTaGTGTAGGAGATCAGGCTGG +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRMRVTS*CRRSGW
Trigger: CCAGCCTGATCTCCTACACCAGCTTGTCACTCTCAT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGAGATCCAACGTCTCTaGGAAGGCAGCCATCTTGCA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLEIQRL*EGSHLA
Trigger: TGCAAGATGGCTGCCTTCCCAGAGACGTTGGATCTC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAACCTCTGGTCTGGGTTTaGCCTGTAGCTGTTGGCGAA +
Preference number: 4 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCEPLVWV*PVAVGE
Trigger: TTCGCCAACAGCTACAGGCCAAACCCAGACCAGAGG...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTCTCCAGCAGCCCTTaGACCTTAGAAATATTGTTG +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTFSSSP*TLEILL
Trigger: CAACAATATTTCTAAGGTCCAAGGGCTGCTGGAGAA...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGTTCAAGAAAGGGCTGTaGTCTGTGGAAGGTGTCAGG +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEFKKGL*SVEGVR
Trigger: CCTGACACCTTCCACAGACCACAGCCCTTTCTTGAA...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCAGCTACTGCTAGATTaGGATCCAACGTCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLQLLLD*DPTSLG
Trigger: TCCCAGAGACGTTGGATCTCAATCTAGCAGTAGCTG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGTTCCAGGACATCCTTaGCATCCCCAATCTGATGCA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLVPGHP*HPQSDA
Trigger: TGCATCAGATTGGGGATGTCAAGGATGTCCTGGAAC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAATCTGTTCCCCTTCCTTaGAGGCCACAATCACAGAGC +
Preference number: 4 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCESVPLP*RPQSQS
Trigger: GCTCTGTGATTGTGGCCTTCAAGGAAGGGGAACAGA...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR TCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTATTTCCAAACCTGTaGGACCTTCCGCACCTGAGA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLLFPNL*DLPHLR
Trigger: TCTCAGGTGCGGAAGGTCTCACAGGTTTGGAAATAG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGGATGCCAGACTTCTCTaGTATGGGCCTTATTTTCGC +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEDARLL*YGPYFR
Trigger: GCGAAAATAAGGCCCATAGCAGAGAAGTCTGGCATC...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGGCGGATTTTGCAGATaGCAGACTTCTCTGCTATGG +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLGGFCR*QTSLLW
Trigger: CCATAGCAGAGAAGTCTGGCATCTGCAAAATCCGCC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGTTCCCACCTCCACTTTaGTCATCCTTCACCGTAACA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRFPPPL*SSFTVT
Trigger: TGTTACGGTGAAGGATGAGCAAAGTGGAGGTGGGAA...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCCCACCTCCACTTTaGTCATCCTTCACCGTAACA +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHFPPPL*SSFTVT
Trigger: TGTTACGGTGAAGGATGAGCAAAGTGGAGGTGGGAA...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGGCTCTAGGCTCAAGTaGTGCTTGAGCAATGTTGAT +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREGSRLK*CLSNVD
Trigger: ATCAACATTGCTCAAGCAGCACTTGAGCCTAGAGCC...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTATTTCACCAAAACTCTaGAAACTGTACTCCTGGGTA +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTISPKL*KLYSWV
Trigger: TACCCAGGAGTACAGTTTGCAGAGTTTTGGTGAAAT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCGAATCTTCAGTTTATaGAGCATGGTGGGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRERIFSL*SMVGSS
Trigger: TGAGCTCCCCACCATGCTGCATAAACTGAAGATTCG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCGAATCTTCAGTTTATaGAGCATGGTGGGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRRIFSL*SMVGSS
Trigger: TGAGCTCCCCACCATGCTGCATAAACTGAAGATTCG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGTTTCTGGCACGGTCTTaGCAGCCAATGGCCCTCTCT +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKFLARS*QPMALS
Trigger: AGAGAGGGCCATTGGCTGGCAAGACCGTGCCAGAAA...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAAATTTCACTCTAGTTTaGGCCTCCAGTTCATTTAGC +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRNFTLV*ASSSFS
Trigger: GCTAAATGAACTGGAGGCCCAAACTAGAGTGAAATT...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCCAAGCCCATCATTTTaGGACCTGGCCCATATATCT +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRPSPSF*DLAHIS
Trigger: AGATATATGGGCCAGGTCCCAAAATGATGGGCTTGG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACCTTCACCGTAACAGTTaGGGGGCATGTGACTTTCTT +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHLHRNS*GACDFL
Trigger: AAGAAAGTCACATGCCCCCCAACTGTTACGGTGAAG...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGTGTAGGAGATCAGGCTaGCTATCAAACAGCTCAGGT +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRECRRSG*LSNSSG
Trigger: ACCTGAGCTGTTTGATAGCCAGCCTGATCTCCTACA...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGTGTAGGAGATCAGGCTaGCTATCAAACAGCTCAGGT +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGECRRSG*LSNSSG
Trigger: ACCTGAGCTGTTTGATAGCCAGCCTGATCTCCTACA...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTATGAGAGTGACAAGCTaGTGTAGGAGATCAGGCTGG +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLMRVTS*CRRSGW
Trigger: CCAGCCTGATCTCCTACACCAGCTTGTCACTCTCAT...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGTTTGTGCGGACAACTaGCACACCATGGGACATCAA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLVCADN*HTMGHQ
Trigger: TTGATGTCCCATGGTGTGCCAGTTGTCCGCACAAAC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGAGATCCAACGTCTCTaGGAAGGCAGCCATCTTGCA +
Preference number: 4 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCEEIQRL*EGSHLA
Trigger: TGCAAGATGGCTGCCTTCCCAGAGACGTTGGATCTC...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCAGAGGTCATTGATGTaGGAAAGGCATACAAGGCCA +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREQRSLM*ERHTRP
Trigger: TGGCCTTGTATGCCTTTCCCACATCAATGACCTCTG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACCAGAGGTCATTGATGTaGGAAAGGCATACAAGGCCA +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHQRSLM*ERHTRP
Trigger: TGGCCTTGTATGCCTTTCCCACATCAATGACCTCTG...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCTGTCTCACGAATTATaGCTTCCAATGTGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRLSHEL*LPMWLV
Trigger: CACCAGCCACATTGGAAGCCATAATTCGTGAGACAG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAAGGGCTGTGGTCTGTaGAAGGTGTCAGGAACATAT +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRKGCGL*KVSGTY
Trigger: ATATGTTCCTGACACCTTCCACAGACCACAGCCCTT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTTTCAAGAAAGGGCTGTaGTCTGTGGAAGGTGTCAGG +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLFKKGL*SVEGVR
Trigger: CCTGACACCTTCCACAGACCACAGCCCTTTCTTGAA...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAATAAAGGTACGCACTTaGGCTTCCTCAAGATTTGTT +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRIKVRT*ASSRFV
Trigger: AACAAATCTTGAGGAAGCCCAAGTGCGTACCTTTAT...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGTTTGTTTGCTATTGCTaGCAGGAAAGCCACTGCCAA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRFVCYC*QESHCQ
Trigger: TTGGCAGTGGCTTTCCTGTCAGCAATAGCAAACAAA...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTTGTTTGCTATTGCTaGCAGGAAAGCCACTGCCAA +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHFVCYC*QESHCQ
Trigger: TTGGCAGTGGCTTTCCTGTCAGCAATAGCAAACAAA...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACCTGAGATGTCTGCATTaGTGTGACAGAGAACAGACT +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHLRCLH*CDREQT
Trigger: AGTCTGTTCTCTGTCACATCAATGCAGACATCTCAG...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCTTGTCCGACTCCCTTaGTGTTCAAATTTTTCCAGC +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRLVRLP*CSNFSS
Trigger: GCTGGAAAAATTTGAACATCAAGGGAGTCGGACAAG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCTTGTCCGACTCCCTTaGTGTTCAAATTTTTCCAGC +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRELVRLP*CSNFSS
Trigger: GCTGGAAAAATTTGAACATCAAGGGAGTCGGACAAG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAGCTCCGAGCCCTTTTTaGCTGAAGCTCCTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISAPSPF*LKLLLN
Trigger: GTTCAACAGGAGCTTCAGTCAAAAAGGGCTCGGAGC...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAGCAAAAAGCTCCTTCTaGGGTCCAGGCCAGGAGATA +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISAKSSF*GPGQEI
Trigger: TATCTCCTGGCCTGGACCTCAGAAGGAGCTTTTTGC...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAGAAAAAGAGAGCTGGTaGCTTAACTTGCTAAAACAA +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLREKESW*LNLLKQ
Trigger: TTGTTTTAGCAAGTTAAGTCACCAGCTCTCTTTTTC...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR TCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGGTGTACAACTGTCCTaGCATTGGATTGCCTGCTTA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLGVQLS*HWIACL
Trigger: TAAGCAGGCAATCCAATGTCAGGACAGTTGTACACC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGTCTAGGCTCAAGTGCTaGTTGAGCAATGTTGATGAC +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRESRLKC*LSNVDD
Trigger: GTCATCAACATTGCTCAAGCAGCACTTGAGCCTAGA...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGACATATTTTCACGGTCTaGTTTCTCCTGATAATGTTC +
Preference number: 4 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRHIFTV*FLLIMF
Trigger: GAACATTATCAGGAGAAAGCAGACCGTGAAAATATG...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGACAAATGACCTTTGGTaGCACTGTCACAACTGTTGC +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRTNDLW*HCHNCC
Trigger: GCAACAGTTGTGACAGTGGCACCAAAGGTCATTTGT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGACAAATGACCTTTGGTaGCACTGTCACAACTGTTGC +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGETNDLW*HCHNCC
Trigger: GCAACAGTTGTGACAGTGGCACCAAAGGTCATTTGT...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGGCCAATGTTTTTGCCTaGTGGGTAGTGGAGACGCTG +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKANVFA*WVVETL
Trigger: CAGCGTCTCCACTACCCACCAGGCAAAAACATTGGC...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTTCACCGTAACAGTTaGGGGGCATGTGACTTTCTT +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLLHRNS*GACDFL
Trigger: AAGAAAGTCACATGCCCCCCAACTGTTACGGTGAAG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCCCAGCGCTCTGCAATaGTCAGTAGTTCTTGCAGCT +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKPSALQ*SVVLAA
Trigger: AGCTGCAAGAACTACTGACCATTGCAGAGCGCTGGG...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTGTGGATGCTTCTGCCTaGCCTCCAGGCAGAAATGAG +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIVDASA*PPGRNE
Trigger: CTCATTTCTGCCTGGAGGCCAGGCAGAAGCATCCAC...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTAGGCCTCCTCTGGTCTaGGTTTGGCCTGTAGCTGTT +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIRPPLV*VWPVAV
Trigger: AACAGCTACAGGCCAAACCCAGACCAGAGGAGGCCT...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTAAGGGCTGTGGTCTGTaGAAGGTGTCAGGAACATAT +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLKGCGL*KVSGTY
Trigger: ATATGTTCCTGACACCTTCCACAGACCACAGCCCTT...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCACAGCTACTGCTAGATTaGGATCCAACGTCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISQLLLD*DPTSLG
Trigger: TCCCAGAGACGTTGGATCTCAATCTAGCAGTAGCTG...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAGTTCCAGGACATCCTTaGCATCCCCAATCTGATGCA +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISVPGHP*HPQSDA
Trigger: TGCATCAGATTGGGGATGTCAAGGATGTCCTGGAAC...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTTGTCCGACTCCCTTaGTGTTCAAATTTTTCCAGC +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLLVRLP*CSNFSS
Trigger: GCTGGAAAAATTTGAACATCAAGGGAGTCGGACAAG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAAAAACAACCACAAATaGCCTTTGGTGCCACTGTCA +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRKNNHK*PLVPLS
Trigger: TGACAGTGGCACCAAAGGTCATTTGTGGTTGTTTTT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACCTGTACTTGGACAGGTaGAGCAATTTCTACTCTACT +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHLYLDR*SNFYST
Trigger: AGTAGAGTAGAAATTGCTTCACCTGTCCAAGTACAG...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTTCTAGGCTCAAGTGCTaGTTGAGCAATGTTGATGAC +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLSRLKC*LSNVDD
Trigger: GTCATCAACATTGCTCAAGCAGCACTTGAGCCTAGA...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGGCTCTAGGCTCAAGTaGTGCTTGAGCAATGTTGAT +
Preference number: 4 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCEGSRLK*CLSNVD
Trigger: ATCAACATTGCTCAAGCAGCACTTGAGCCTAGAGCC...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTCTCCAAATGCTCTGCTaGCAGGGAGGGTACACCATA +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLILQMLC*QGGYTI
Trigger: TATGGTGTACCCTCCCTGGCAGCAGAGCATTTGGAG...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TCTCATCATGCCTCATCAGAATTTTCCGTTAACAAGTGTCAGAGAATCTGTAATGGCGGTAGTGTTCAATaGACTGGCGTCCAGCAGGTA +
Preference number: 4 (lower is better)
Translates to: SHHASSEFSVNKCQRICNGGSVQ*TGVQQV
Trigger: TACCTGCTGGACGCCAGTGCATTGAACACTACCGCC...ATTACAGATTCTCTGACACTTGTTAACGGAAAATTCTGATGAGGCATGATGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGATGAACATCTCCTTGTaGACAGCTACTGCTAGATTG +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRMNISL*TATARL
Trigger: CAATCTAGCAGTAGCTGTGCACAAGGAGATGTTCAT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACAGCAATCCAAGCTTGTaGCTTAGTCAGAGCTTCTTT +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHSNPSL*LSQSFF
Trigger: AAAGAAGCTCTGACTAAGGCACAAGCTTGGATTGCT...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTCTCTCCAGGAATGTaGTGTCAATACCTGCAGCTC +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKLSPGM*CQYLQL
Trigger: GAGCTGCAGGTATTGACAGCACATTCCTGGAGAGAG...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTACAAATGACCTTTGGTaGCACTGTCACAACTGTTGC +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLTNDLW*HCHNCC
Trigger: GCAACAGTTGTGACAGTGGCACCAAAGGTCATTTGT...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTCATATTAAACAGTACTaGGACAGAACGAAAAAGCAA +
Preference number: 4 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTHIKQY*DRTKKQ
Trigger: TTGCTTTTTCGTTCTGTCGCAGTACTGTTTAATATG...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGTTCATTTAGCCTTTaGACGCGAGGAGTAAATCTG +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGESSFSL*TRGVNL
Trigger: CAGATTTACTCCTCGCGTCCAAAGGCTAAATGAACT...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTTGCAAACTGTACTCCTaGGTAGCCTGTTCAAATCCA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLCKLYS*VACSNP
Trigger: TGGATTTGAACAGGCTACCCAGGAGTACAGTTTGCA...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGATGAGAGTGACAAGCTaGTGTAGGAGATCAGGCTGG +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKMRVTS*CRRSGW
Trigger: CCAGCCTGATCTCCTACACCAGCTTGTCACTCTCAT...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGGTTTGTGCGGACAACTaGCACACCATGGGACATCAA +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKVCADN*HTMGHQ
Trigger: TTGATGTCCCATGGTGTGCCAGTTGTCCGCACAAAC...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TCTCATCATGCCTCATCAGAATTTTCCGTTAACAAGTGTCAGAGAATCTGTAATTTCCAATGTGGCTGGTaGATGCTTCTGCCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: SHHASSEFSVNKCQRICNFQCGW*MLLPGL
Trigger: GAGGCCAGGCAGAAGCATCCACCAGCCACATTGGAA...ATTACAGATTCTCTGACACTTGTTAACGGAAAATTCTGATGAGGCATGATGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAACTGTCTCACGAATTATaGCTTCCAATGTGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCELSHEL*LPMWLV
Trigger: CACCAGCCACATTGGAAGCCATAATTCGTGAGACAG...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCACTGAGCATCGGGGTGTaGACTTTACGAACCAACCTT +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISLSIGV*TLRTNL
Trigger: AAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAG...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGTTTACCTGGTCCCTATaGTGTGGTAAGGTAAAGTAC +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREFTWSL*CGKVKY
Trigger: GTACTTTACCTTACCACACCATAGGGACCAGGTAAA...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACCAGAAGTTCTCATCATaGCTCATCAGAATTTTCCGT +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHQKFSS*LIRIFR
Trigger: ACGGAAAATTCTGATGAGGCATGATGAGAACTTCTG...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCACTTCACCGTAACAGTTaGGGGGCATGTGACTTTCTT +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISLHRNS*GACDFL
Trigger: AAGAAAGTCACATGCCCCCCAACTGTTACGGTGAAG...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGCCACGGGAGCATACTTaGCAAATATATGAGTCAATA +
Preference number: 4 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEPREHT*QIYESI
Trigger: TATTGACTCATATATTTGCCAAGTATGCTCCCGTGG...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCATGTAGGAGATCAGGCTaGCTATCAAACAGCTCAGGT +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISCRRSG*LSNSSG
Trigger: ACCTGAGCTGTTTGATAGCCAGCCTGATCTCCTACA...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTTTCTCCAGCAGCCCTTaGACCTTAGAAATATTGTTG +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLFSSSP*TLEILL
Trigger: CAACAATATTTCTAAGGTCCAAGGGCTGCTGGAGAA...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTTTCAAGAAAGGGCTGTaGTCTGTGGAAGGTGTCAGG +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIFKKGL*SVEGVR
Trigger: CCTGACACCTTCCACAGACCACAGCCCTTTCTTGAA...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR TCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGTACTTGGCAAATATATaGGTCAATAAACTGGGCACT +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREYLANI*VNKLGT
Trigger: AGTGCCCAGTTTATTGACTCATATATTTGCCAAGTA...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGTACTTGGCAAATATATaGGTCAATAAACTGGGCACT +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRYLANI*VNKLGT
Trigger: AGTGCCCAGTTTATTGACTCATATATTTGCCAAGTA...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR TCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTGAGATGTCTGCATTaGTGTGACAGAGAACAGACT +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKLRCLH*CDREQT
Trigger: AGTCTGTTCTCTGTCACATCAATGCAGACATCTCAG...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCATGTGACTTTCTTATaGACAGTCTTATCCTTATCC +
Preference number: 4 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRHVTFL*TVLSLS
Trigger: GGATAAGGATAAGACTGTGCATAAGAAAGTCACATG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACCATGTGACTTTCTTATaGACAGTCTTATCCTTATCC +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHHVTFL*TVLSLS
Trigger: GGATAAGGATAAGACTGTGCATAAGAAAGTCACATG...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTCGAATCTTCAGTTTATaGAGCATGGTGGGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIRIFSL*SMVGSS
Trigger: TGAGCTCCCCACCATGCTGCATAAACTGAAGATTCG...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCATATTTTCACGGTCTaGTTTCTCCTGATAATGTTC +
Preference number: 4 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREHIFTV*FLLIMF
Trigger: GAACATTATCAGGAGAAAGCAGACCGTGAAAATATG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGTCCTGACATTGGATTaGCTGCTTACTGTGAAGTAT +
Preference number: 4 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCEVLTLD*LLTVKY
Trigger: ATACTTCACAGTAAGCAGGCAATCCAATGTCAGGAC...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAAGTTCATTTAGCCTTTaGACGCGAGGAGTAAATCTG +
Preference number: 4 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCESSFSL*TRGVNL
Trigger: CAGATTTACTCCTCGCGTCCAAAGGCTAAATGAACT...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCCACGGGAGCATACTTaGCAAATATATGAGTCAATA +
Preference number: 4 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLPREHT*QIYESI
Trigger: TATTGACTCATATATTTGCCAAGTATGCTCCCGTGG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCATGCAAACTGTACTCCTaGGTAGCCTGTTCAAATCCA +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISCKLYS*VACSNP
Trigger: TGGATTTGAACAGGCTACCCAGGAGTACAGTTTGCA...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCATCACAGAGCCGTCGCTaGACTCATATTAAACAGTAC +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISSQSRR*THIKQY
Trigger: GTACTGTTTAATATGAGTCCAGCGACGGCTCTGTGA...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541639.5
CDS-3UTR TCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTTTTGTTTGCTATTGCTaGCAGGAAAGCCACTGCCAA +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIFVCYC*QESHCQ
Trigger: TTGGCAGTGGCTTTCCTGTCAGCAATAGCAAACAAA...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TCTCATCATGCCTCATCAGAATTTTCCGTTAACAAGTGTCAGAGAATCTGTAATGATGCCAGACTTCTCTaGTATGGGCCTTATTTTCGC +
Preference number: 4 (lower is better)
Translates to: SHHASSEFSVNKCQRICNDARLL*YGPYFR
Trigger: GCGAAAATAAGGCCCATAGCAGAGAAGTCTGGCATC...ATTACAGATTCTCTGACACTTGTTAACGGAAAATTCTGATGAGGCATGATGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAATGAACATCTCCTTGTaGACAGCTACTGCTAGATTG +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISMNISL*TATARL
Trigger: CAATCTAGCAGTAGCTGTGCACAAGGAGATGTTCAT...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACGCAGAGAACACTGAATaGCCTATGAAATTCAATTTT +
Preference number: 4 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHAENTE*PMKFNF
Trigger: AAAATTGAATTTCATAGGCCATTCAGTGTTCTCTGC...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAATTTCACCAAAACTCTaGAAACTGTACTCCTGGGTA +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISISPKL*KLYSWV
Trigger: TACCCAGGAGTACAGTTTGCAGAGTTTTGGTGAAAT...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR GCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTATGAACATCTCCTTGTaGACAGCTACTGCTAGATTG +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIMNISL*TATARL
Trigger: CAATCTAGCAGTAGCTGTGCACAAGGAGATGTTCAT...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAAATTACGTTGACCCATaGTACTGTTGTTTCCTAACC +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISNYVDP*YCCFLT
Trigger: GGTTAGGAAACAACAGTAGCATGGGTCAACGTAATT...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAAATTTCACTCTAGTTTaGGCCTCCAGTTCATTTAGC +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISNFTLV*ASSSFS
Trigger: GCTAAATGAACTGGAGGCCCAAACTAGAGTGAAATT...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCCACGGGAGCATACTTaGCAAATATATGAGTCAATA +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKPREHT*QIYESI
Trigger: TATTGACTCATATATTTGCCAAGTATGCTCCCGTGG...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTTTCTCCAGCAGCCCTTaGACCTTAGAAATATTGTTG +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIFSSSP*TLEILL
Trigger: CAACAATATTTCTAAGGTCCAAGGGCTGCTGGAGAA...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGATAAAGGTACGCACTTaGGCTTCCTCAAGATTTGTT +
Preference number: 4 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKIKVRT*ASSRFV
Trigger: AACAAATCTTGAGGAAGCCCAAGTGCGTACCTTTAT...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAATAAAGGTACGCACTTaGGCTTCCTCAAGATTTGTT +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISIKVRT*ASSRFV
Trigger: AACAAATCTTGAGGAAGCCCAAGTGCGTACCTTTAT...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp TCTCATCATGCCTCATCAGAATTTTCCGTTAACAAGTGTCAGAGAATCTGTAATTGGTGCTGGGTCAACTaGACATCCTTTGAGAAAACA +
Preference number: 4 (lower is better)
Translates to: SHHASSEFSVNKCQRICNWCWVN*TSFEKT
Trigger: TGTTTTCTCAAAGGATGTCCAGTTGACCCAGCACCA...ATTACAGATTCTCTGACACTTGTTAACGGAAAATTCTGATGAGGCATGATGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTTCAGCAAGGAGTAGGTaGAAAAGCGAGAGATTCAAT +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLISARSR*KSERFN
Trigger: ATTGAATCTCTCGCTTTTCCACCTACTCCTTGCTGA...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR CAA 72 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATaGCCTGCTTACTGTGAAGTATGTGAACAATTTGTG +
Preference number: 4 (lower is better)
Translates to: NLRKVYNCPDIG*PAYCEVCEQFV
Trigger: CACAAATTGTTCACATACTTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR TCA 90 bp TCTCATCATGCCTCATCAGAATTTTCCGTTAACAAGTGTCAGAGAATCTGTAATAAAAACAACCACAAATaGCCTTTGGTGCCACTGTCA +
Preference number: 4 (lower is better)
Translates to: SHHASSEFSVNKCQRICNKNNHK*PLVPLS
Trigger: TGACAGTGGCACCAAAGGTCATTTGTGGTTGTTTTT...ATTACAGATTCTCTGACACTTGTTAACGGAAAATTCTGATGAGGCATGATGAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCACATATTTTCACGGTCTaGTTTCTCCTGATAATGTTC +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISHIFTV*FLLIMF
Trigger: GAACATTATCAGGAGAAAGCAGACCGTGAAAATATG...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CCA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCATCTATATATTTTACCTaGTCCCTATGGTGTGGTAAG +
Preference number: 4 (lower is better)
Translates to: VWTLRTNLLTVTLGERISSIYFT*SLWCGK
Trigger: CTTACCACACCATAGGGACCAGGTAAAATATATAGA...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR TCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTACACTGAATGGCCTATaGAATTCAATTTTTGCTGCA +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLITLNGL*NSIFAA
Trigger: TGCAGCAAAAATTGAATTTCATAGGCCATTCAGTGT...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCTAATTCATGTGACTTTCTTATaGACAGTCTTATCCTTATCC +
Preference number: 4 (lower is better)
Translates to: FYSTRSSPSIALLLGKLIHVTFL*TVLSLS
Trigger: GGATAAGGATAAGACTGTGCATAAGAAAGTCACATG...AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
3UTR CAA 72 bp AATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTaGTTACTGGGAAAGCTAATTATAGTTCCCTATGAC +
Preference number: 4 (lower is better)
Translates to: NFYSTRSSPSIA*LLGKLIIVPYD
Trigger: GTCATAGGGAACTATAATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR GCA 90 bp TCTCATCATGCCTCATCAGAATTTTCCGTTAACAAGTGTCAGAGAATCTGTAATAAATTCTTGCCTATGTaGAAAAACTTAGTGCTGCAT +
Preference number: 4 (lower is better)
Translates to: SHHASSEFSVNKCQRICNKFLPM*KNLVLH
Trigger: ATGCAGCACTAAGTTTTTGCACATAGGCAAGAATTT...ATTACAGATTCTCTGACACTTGTTAACGGAAAATTCTGATGAGGCATGATGAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS CCA 90 bp CAGGTCTGGGCGGAAGGTGGTGCGGTGAAAGGTGCAGGGACAGACTaGGTTAGAGGCCACTCTTGGTCTTATCCTCCATGGCCACAACAG +
Preference number: 5 (lower is better)
Translates to: QVWAEGGAVKGAGTD*VRGHSWSYPPWPQQ
Trigger: CTGTTGTGGCCATGGAGGATAAGACCAAGAGTGGCCTCTAACCCAGTCTGTCCCTGCACCTTTCACCGCACCACCTTCCGCCCAGACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000469599.6
ENST00000492117.1
CDS TCA 90 bp AACAGTGAGGACAGTAGCTCCAGGTCTGGGCGGAAGGTGGTGCGGTaGAAGGTGCAGGGACAGACTGGGTTAGAGGCCACTCTTGGTCTT +
Preference number: 5 (lower is better)
Translates to: NSEDSSSRSGRKVVR*KVQGQTGLEATLGL
Trigger: AAGACCAAGAGTGGCCTCTAACCCAGTCTGTCCCTGCACCTTTCACCGCACCACCTTCCGCCCAGACCTGGAGCTACTGTCCTCACTGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000469599.6
ENST00000492117.1
CDS GCA 90 bp GTCAGGGATCCTAGTTTTACAGCCACCATCTTGACCTCCGGGCCCTaGAGTGTGGTACGAGCCGTCTCACTCCGCGGATCGATTTTTCCG +
Preference number: 5 (lower is better)
Translates to: VRDPSFTATILTSGP*SVVRAVSLRGSIFP
Trigger: CGGAAAAATCGATCCGCGGAGTGAGACGGCTCGTACCACACTGCAGGGCCCGGAGGTCAAGATGGTGGCTGTAAAACTAGGATCCCTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000440077.5
ENST00000541639.5
CDS-3UTR CAA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTAGCTCAGCCCGGGCCTaGTCCACAGAAGGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTSSARA*STEGLE
Trigger: CTCCAGCCCTTCTGTGGACAAGGCCCGGGCTGAGCT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS TCA 90 bp AATGCTAAGCAATCGTCAGGGATCCTAGTTTTACAGCCACCATCTTaGCCTCCGGGCCCTGCAGTGTGGTACGAGCCGTCTCACTCCGCG +
Preference number: 5 (lower is better)
Translates to: NAKQSSGILVLQPPS*PPGPAVWYEPSHSA
Trigger: CGCGGAGTGAGACGGCTCGTACCACACTGCAGGGCCCGGAGGTCAAGATGGTGGCTGTAAAACTAGGATCCCTGACGATTGCTTAGCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000382806.6
ENST00000440077.5
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGATTTACAGCCACCATCTaGACCTCCGGGCCCTGCAGT +
Preference number: 5 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRFTATI*TSGPCS
Trigger: ACTGCAGGGCCCGGAGGTCAAGATGGTGGCTGTAAA...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTTACAGCCACCATCTaGACCTCCGGGCCCTGCAGT +
Preference number: 5 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTFTATI*TSGPCS
Trigger: ACTGCAGGGCCCGGAGGTCAAGATGGTGGCTGTAAA...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCTCAGCCCGGGCCTaGTCCACAGAAGGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGESSARA*STEGLE
Trigger: CTCCAGCCCTTCTGTGGACAAGGCCCGGGCTGAGCT...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTCCTCTGGTCTGGGTTaGGCCTGTAGCTGTTGGCGA +
Preference number: 5 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTSSGLG*ACSCWR
Trigger: TCGCCAACAGCTACAGGCCAAACCCAGACCAGAGGA...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGATCCTCTGGTCTGGGTTaGGCCTGTAGCTGTTGGCGA +
Preference number: 5 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRSSGLG*ACSCWR
Trigger: TCGCCAACAGCTACAGGCCAAACCCAGACCAGAGGA...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGACCGCCAAGATACATTTaGGGCACCTCCAGATGCCTC +
Preference number: 5 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRPPRYI*GTSRCL
Trigger: GAGGCATCTGGAGGTGCCCAAAATGTATCTTGGCGG...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGACCCAAGCCCATCATTTaGGGACCTGGCCCATATATC +
Preference number: 5 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRPKPII*GPGPYI
Trigger: GATATATGGGCCAGGTCCCAAAATGATGGGCTTGGG...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTCACGTGGTCTTGCACTaGATGCACTGGCGTTCATCA +
Preference number: 5 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTHVVLH*MHWRSS
Trigger: TGATGAACGCCAGTGCATCAAGTGCAAGACCACGTG...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTAAGAAGCACGTGGTCTaGCACTTGATGCACTGGCGT +
Preference number: 5 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTKKHVV*HLMHWR
Trigger: ACGCCAGTGCATCAAGTGCAAGACCACGTGCTTCTT...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCCAGCAAGGCTAGGATaGTCTCTAGGCGTGGCCGTC +
Preference number: 5 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRPARLG*SLGVAV
Trigger: GACGGCCACGCCTAGAGACAATCCTAGCCTTGCTGG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGCCAGCAAGGCTAGGATaGTCTCTAGGCGTGGCCGTC +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEPARLG*SLGVAV
Trigger: GACGGCCACGCCTAGAGACAATCCTAGCCTTGCTGG...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGCCAGAGCCCGGCTCCTaGTCCGACTCCCTTGATGTT +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEPEPGS*SDSLDV
Trigger: AACATCAAGGGAGTCGGACAAGGAGCCGGGCTCTGG...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS GCA 90 bp CGAAGTTGCATGGTTGTCTTAGTGCAGGGCTCTAGGCTCAAGTGCTaGTTGAGCAATGTTGATGACACGTTCCCACCTCCACTTTGCTCA +
Preference number: 5 (lower is better)
Translates to: RSCMVVLVQGSRLKC*LSNVDDTFPPPLCS
Trigger: TGAGCAAAGTGGAGGTGGGAACGTGTCATCAACATTGCTCAAGCAGCACTTGAGCCTAGAGCCCTGCACTAAGACAACCATGCAACTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000447300.1
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGCAGGCTGTAGCCTTTTaGCCCGTCGACTGTAGCTGC +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEQAVAF*PVDCSC
Trigger: GCAGCTACAGTCGACGGGCAAAAAGGCTACAGCCTG...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCAGGCTGTAGCCTTTTaGCCCGTCGACTGTAGCTGC +
Preference number: 5 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREQAVAF*PVDCSC
Trigger: GCAGCTACAGTCGACGGGCAAAAAGGCTACAGCCTG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGGACCAGCCCCAGGACTaGAGCAATACAAGCCTCCAC +
Preference number: 5 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRDQPQD*SNTSLH
Trigger: GTGGAGGCTTGTATTGCTCAAGTCCTGGGGCTGGTC...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAAGCTCAGCCCGGGCCTaGTCCACAGAAGGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: VWTLRTNLLTVTLGERISSSARA*STEGLE
Trigger: CTCCAGCCCTTCTGTGGACAAGGCCCGGGCTGAGCT...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCCAGCAAGGCTAGGATaGTCTCTAGGCGTGGCCGTC +
Preference number: 5 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLPARLG*SLGVAV
Trigger: GACGGCCACGCCTAGAGACAATCCTAGCCTTGCTGG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAAGCTCCGAGCCCTTTTaGACTGAAGCTCCTGTTGAA +
Preference number: 5 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRSSEPF*TEAPVE
Trigger: TTCAACAGGAGCTTCAGTCAAAAAGGGCTCGGAGCT...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTCCACTGTCACAACTGTaGCTCATCAGAGTAGGAGAG +
Preference number: 5 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTPLSQL*LIRVGE
Trigger: CTCTCCTACTCTGATGAGCAACAGTTGTGACAGTGG...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS GCA 90 bp TTTCGAAGTTGCATGGTTGTCTTAGTGCAGGGCTCTAGGCTCAAGTaGTGCTTGAGCAATGTTGATGACACGTTCCCACCTCCACTTTGC +
Preference number: 5 (lower is better)
Translates to: FRSCMVVLVQGSRLK*CLSNVDDTFPPPLC
Trigger: GCAAAGTGGAGGTGGGAACGTGTCATCAACATTGCTCAAGCAGCACTTGAGCCTAGAGCCCTGCACTAAGACAACCATGCAACTTCGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000447300.1
ENST00000541639.5
CDS-3UTR CAA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCCGCCAAGATACATTTaGGGCACCTCCAGATGCCTC +
Preference number: 5 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRPPRYI*GTSRCL
Trigger: GAGGCATCTGGAGGTGCCCAAAATGTATCTTGGCGG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGACCAGCCCCAGGACTaGAGCAATACAAGCCTCCAC +
Preference number: 5 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLDQPQD*SNTSLH
Trigger: GTGGAGGCTTGTATTGCTCAAGTCCTGGGGCTGGTC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGGGCTGGAGGCTATCTaGGCACCCATAACCAAAAGC +
Preference number: 5 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREGLEAI*APITKS
Trigger: GCTTTTGGTTATGGGTGCCAAGATAGCCTCCAGCCC...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGCCCAAGCCCATCATTTaGGGACCTGGCCCATATATC +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEPKPII*GPGPYI
Trigger: GATATATGGGCCAGGTCCCAAAATGATGGGCTTGGG...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCCGCCAAGATACATTTaGGGCACCTCCAGATGCCTC +
Preference number: 5 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLPPRYI*GTSRCL
Trigger: GAGGCATCTGGAGGTGCCCAAAATGTATCTTGGCGG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGCACGTGGTCTTGCACTaGATGCACTGGCGTTCATCA +
Preference number: 5 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRHVVLH*MHWRSS
Trigger: TGATGAACGCCAGTGCATCAAGTGCAAGACCACGTG...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCACGTGGTCTTGCACTaGATGCACTGGCGTTCATCA +
Preference number: 5 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREHVVLH*MHWRSS
Trigger: TGATGAACGCCAGTGCATCAAGTGCAAGACCACGTG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAAGAAGCACGTGGTCTaGCACTTGATGCACTGGCGT +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEKKHVV*HLMHWR
Trigger: ACGCCAGTGCATCAAGTGCAAGACCACGTGCTTCTT...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGTATGTGAACGGGCTGGAGGCTATCTaGGCACCCATAACCAAAAGC +
Preference number: 5 (lower is better)
Translates to: RCTTVLTLDCLLTVKYVNGLEAI*APITKS
Trigger: GCTTTTGGTTATGGGTGCCAAGATAGCCTCCAGCCC...GTTCACATACTTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CAA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTCCTTGTCCGACTCCCTaGATGTTCAAATTTTTCCAG +
Preference number: 5 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTPCPTP*MFKFFQ
Trigger: CTGGAAAAATTTGAACATCAAGGGAGTCGGACAAGG...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCACCAGAGCCCGGCTCCTaGTCCGACTCCCTTGATGTT +
Preference number: 5 (lower is better)
Translates to: VWTLRTNLLTVTLGERISPEPGS*SDSLDV
Trigger: AACATCAAGGGAGTCGGACAAGGAGCCGGGCTCTGG...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAGGGCTTCCTCAAGATTaGTTTGTCCCTATTCAGACT +
Preference number: 5 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRGLPQD*FVPIQT
Trigger: AGTCTGAATAGGGACAAACAAATCTTGAGGAAGCCC...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGATGTCCTGACATTGGATaGCCTGCTTACTGTGAAGTA +
Preference number: 5 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRCPDIG*PAYCEV
Trigger: TACTTCACAGTAAGCAGGCAATCCAATGTCAGGACA...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGCTTGAGCCCAGAAGCTaGAGATCAGCCTGGTCAACA +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGELEPRS*RSAWST
Trigger: TGTTGACCAGGCTGATCTCAAGCTTCTGGGCTCAAG...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541639.5
CDS-3UTR CAA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCGGGTGTGTGTTACATaGCACATGGTTGGCTCCAGA +
Preference number: 5 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLRVCVT*HMVGSR
Trigger: TCTGGAGCCAACCATGTGCAATGTAACACACACCCG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317961.9
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGCTCAAGTGCTGCTaGAGCAATGTTGATGACACG +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGERLKCC*SNVDDT
Trigger: CGTGTCATCAACATTGCTCAAGCAGCACTTGAGCCT...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGGCTCAAGTGCTGCTaGAGCAATGTTGATGACACG +
Preference number: 5 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRRLKCC*SNVDDT
Trigger: CGTGTCATCAACATTGCTCAAGCAGCACTTGAGCCT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAGTGATTCTTTCGAAGTaGCATGGTTGTCTTAGTGCA +
Preference number: 5 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRVILSK*HGCLSA
Trigger: TGCACTAAGACAACCATGCAACTTCGAAAGAATCAC...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGACAGCTACTGCTAGATaGAGATCCAACGTCTCTGGG +
Preference number: 5 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRTATAR*RSNVSG
Trigger: CCCAGAGACGTTGGATCTCAATCTAGCAGTAGCTGT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGACAGCTACTGCTAGATaGAGATCCAACGTCTCTGGG +
Preference number: 5 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRETATAR*RSNVSG
Trigger: CCCAGAGACGTTGGATCTCAATCTAGCAGTAGCTGT...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGGACCAGCCCCAGGACTaGAGCAATACAAGCCTCCAC +
Preference number: 5 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKDQPQD*SNTSLH
Trigger: GTGGAGGCTTGTATTGCTCAAGTCCTGGGGCTGGTC...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CAA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGCTCCGAGCCCTTTTaGACTGAAGCTCCTGTTGAA +
Preference number: 5 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRSSEPF*TEAPVE
Trigger: TTCAACAGGAGCTTCAGTCAAAAAGGGCTCGGAGCT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGAGCTCCGAGCCCTTTTaGACTGAAGCTCCTGTTGAA +
Preference number: 5 (lower is better)
Translates to: HRGVDFTNQPFNSNSRRESSEPF*TEAPVE
Trigger: TTCAACAGGAGCTTCAGTCAAAAAGGGCTCGGAGCT...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGCCACTGTCACAACTGTaGCTCATCAGAGTAGGAGAG +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEPLSQL*LIRVGE
Trigger: CTCTCCTACTCTGATGAGCAACAGTTGTGACAGTGG...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS GCA 90 bp GTCACAAGAGGTCCATATTGTAAACTCAAAAATAATGCCCTGTTTTaGCACTGTCAACTAACACAGTGCCGGAGGTCCCAGCCAGAGCAA +
Preference number: 5 (lower is better)
Translates to: VTRGPYCKLKNNALF*HCQLTQCRRSQPEQ
Trigger: TTGCTCTGGCTGGGACCTCCGGCACTGTGTTAGTTGACAGTGGCAAAACAGGGCATTATTTTTGAGTTTACAATATGGACCTCTTGTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000492117.1
CDS-3UTR CAA 90 bp AGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTACGAGGAGATAAGTTTTGTTaGCTATTGCTGACAGGAAAG +
Preference number: 5 (lower is better)
Translates to: SRNVAGKTLLSIGVWTLRGDKFC*LLLTGK
Trigger: CTTTCCTGTCAGCAATAGCAAACAAAACTTATCTCC...TCGTAAAGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAAAGAAGCACGTGGTCTaGCACTTGATGCACTGGCGT +
Preference number: 5 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCEKKHVV*HLMHWR
Trigger: ACGCCAGTGCATCAAGTGCAAGACCACGTGCTTCTT...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CAA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAGGGCTGGAGGCTATCTaGGCACCCATAACCAAAAGC +
Preference number: 5 (lower is better)
Translates to: VWTLRTNLLTVTLGERISGLEAI*APITKS
Trigger: GCTTTTGGTTATGGGTGCCAAGATAGCCTCCAGCCC...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGGTAGTGGTCACCATTTaGGATCTCATCCACATCAGC +
Preference number: 5 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRVVVTI*DLIHIS
Trigger: GCTGATGTGGATGAGATCCAAAATGGTGACCACTAC...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGGTAGTGGTCACCATTTaGGATCTCATCCACATCAGC +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEVVVTI*DLIHIS
Trigger: GCTGATGTGGATGAGATCCAAAATGGTGACCACTAC...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS CCA 90 bp TTTCAGTCTGGAAGGATATTTCCTTGCATGCTGTACACACAGAGATaGTATGGGAACACATATCTCCGCCACTTCCAGGAAAGAACCTTG +
Preference number: 5 (lower is better)
Translates to: FQSGRIFPCMLYTQR*YGNTYLRHFQERTL
Trigger: CAAGGTTCTTTCCTGGAAGTGGCGGAGATATGTGTTCCCATACCATCTCTGTGTGTACAGCATGCAAGGAAATATCCTTCCAGACTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000469599.6
ENST00000485154.1
CDS-3UTR CAA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGCGGGTGTGTGTTACATaGCACATGGTTGGCTCCAGA +
Preference number: 5 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKRVCVT*HMVGSR
Trigger: TCTGGAGCCAACCATGTGCAATGTAACACACACCCG...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CAA 90 bp TATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTGAGCATCGGGGTGTGGACTTTATCTTTTACCTCATaGTCAAACGGGTGTGTGTTA +
Preference number: 5 (lower is better)
Translates to: YASRNVAGKTLLSIGVWTLSFTS*SNGCVL
Trigger: TAACACACACCCGTTTGACAATGAGGTAAAAGATAA...AGTCCACACCCCGATGCTCAGAAGTGTCTTGCCAGCAACATTCCTGCTAGCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCACCCAAGCCCATCATTTaGGGACCTGGCCCATATATC +
Preference number: 5 (lower is better)
Translates to: VWTLRTNLLTVTLGERISPKPII*GPGPYI
Trigger: GATATATGGGCCAGGTCCCAAAATGATGGGCTTGGG...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGCCTTGTCCGACTCCCTaGATGTTCAAATTTTTCCAG +
Preference number: 5 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREPCPTP*MFKFFQ
Trigger: CTGGAAAAATTTGAACATCAAGGGAGTCGGACAAGG...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGGGGCTTCCTCAAGATTaGTTTGTCCCTATTCAGACT +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEGLPQD*FVPIQT
Trigger: AGTCTGAATAGGGACAAACAAATCTTGAGGAAGCCC...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCAAGGCTCAAGTGCTGCTaGAGCAATGTTGATGACACG +
Preference number: 5 (lower is better)
Translates to: VWTLRTNLLTVTLGERISRLKCC*SNVDDT
Trigger: CGTGTCATCAACATTGCTCAAGCAGCACTTGAGCCT...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp CATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGATTCTCCAGCAGCCCTaGGACCTTAGAAATATTGTT +
Preference number: 5 (lower is better)
Translates to: HRGVDFTNQPFNSNSRREILQQP*DLRNIV
Trigger: AACAATATTTCTAAGGTCCAAGGGCTGCTGGAGAAT...CTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACATTCTCCAGCAGCCCTaGGACCTTAGAAATATTGTT +
Preference number: 5 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHILQQP*DLRNIV
Trigger: AACAATATTTCTAAGGTCCAAGGGCTGCTGGAGAAT...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCCTTGTCCGACTCCCTaGATGTTCAAATTTTTCCAG +
Preference number: 5 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLPCPTP*MFKFFQ
Trigger: CTGGAAAAATTTGAACATCAAGGGAGTCGGACAAGG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGGAAGAGCCTGAATCCTaGTGTTGTAAGCTATTTTGG +
Preference number: 5 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSREEPES*CCKLFW
Trigger: CCAAAATAGCTTACAACACAAGGATTCAGGCTCTTC...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGGAAGAGCCTGAATCCTaGTGTTGTAAGCTATTTTGG +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEEEPES*CCKLFW
Trigger: CCAAAATAGCTTACAACACAAGGATTCAGGCTCTTC...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp GTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGAGGATATCACCACTGTCACAACTGTaGCTCATCAGAGTAGGAGAG +
Preference number: 5 (lower is better)
Translates to: VWTLRTNLLTVTLGERISPLSQL*LIRVGE
Trigger: CTCTCCTACTCTGATGAGCAACAGTTGTGACAGTGG...TGATATCCTCTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGGGCTTCCTCAAGATTaGTTTGTCCCTATTCAGACT +
Preference number: 5 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLGLPQD*FVPIQT
Trigger: AGTCTGAATAGGGACAAACAAATCTTGAGGAAGCCC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS CCA 90 bp TCCTTGTGTTGTAAGCTATTTTGGTTTCCTTTCAAGAAAGGGCTGTaGTCTGTGGAAGGTGTCAGGAACATATTTTCACGGTCTGCTTTC +
Preference number: 5 (lower is better)
Translates to: SLCCKLFWFPFKKGL*SVEGVRNIFSRSAF
Trigger: GAAAGCAGACCGTGAAAATATGTTCCTGACACCTTCCACAGACCACAGCCCTTTCTTGAAAGGAAACCAAAATAGCTTACAACACAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000469599.6
ENST00000492117.1
ENST00000541639.5
CDS-3UTR CAA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGTGATTCTTTCGAAGTaGCATGGTTGTCTTAGTGCA +
Preference number: 5 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLVILSK*HGCLSA
Trigger: TGCACTAAGACAACCATGCAACTTCGAAAGAATCAC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp AGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAGGGAGATAAGTTTTGTTaGCTATTGCTGACAGGAAAG +
Preference number: 5 (lower is better)
Translates to: SIGVWTLRTNLLTVTLGEGDKFC*LLLTGK
Trigger: CTTTCCTGTCAGCAATAGCAAACAAAACTTATCTCC...CTCTCCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTGAAGAGCCTGAATCCTaGTGTTGTAAGCTATTTTGG +
Preference number: 5 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLEEPES*CCKLFW
Trigger: CCAAAATAGCTTACAACACAAGGATTCAGGCTCTTC...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000541639.5
CDS-3UTR CAA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACATTGAGGGAGATAACTaGTGTCAGTGCAACTTAATC +
Preference number: 5 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHIEGDN*CQCNLI
Trigger: GATTAAGTTGCACTGACACAAGTTATCTCCCTCAAT...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CAA 90 bp ACTGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTCACCAAGCATAGCTTaGTTACTGGGAAAGCTAATT +
Preference number: 5 (lower is better)
Translates to: TGLGNHSCMLAGMLLARHSPSIA*LLGKLI
Trigger: AATTAGCTTTCCCAGTAACAAAGCTATGCTTGGTGA...GTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CAA 90 bp TCTGAGCATCGGGGTGTGGACTTTACGAACCAACCTTTTAACAGTAACTCTAGGAGAATCTGTAATGGCTaGAGAATCATGACTTTCCTC +
Preference number: 5 (lower is better)
Translates to: SEHRGVDFTNQPFNSNSRRICNG*RIMTFL
Trigger: GAGGAAAGTCATGATTCTCAAGCCATTACAGATTCT...CCTAGAGTTACTGTTAAAAGGTTGGTTCGTAAAGTCCACACCCCGATGCTCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CAA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGACAACTGTCCTGACATaGGATTGCCTGCTTACTGTG +
Preference number: 5 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKTTVLT*DCLLTV
Trigger: CACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGT...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS CCA 90 bp CAGAGAGGAAAGGAAAGTCTCTTCAGTATCCATTGTTGGAAAACCTaGATATCCACATGCAAAAGGATGAAACTTGACCCATCTTTCACC +
Preference number: 5 (lower is better)
Translates to: QRGKESLFSIHCWKT*ISTCKRMKLDPSFT
Trigger: GGTGAAAGATGGGTCAAGTTTCATCCTTTTGCATGTGGATATCCAGGTTTTCCAACAATGGATACTGAAGAGACTTTCCTTTCCTCTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000492117.1
CDS-3UTR CAA 90 bp AGCAATTTCTACTCTACTAGGTCATCACCAAGCATAGCTTTGTTACTGGGAAAGGTGATTCTTTCGAAGTaGCATGGTTGTCTTAGTGCA +
Preference number: 5 (lower is better)
Translates to: SNFYSTRSSPSIALLLGKVILSK*HGCLSA
Trigger: TGCACTAAGACAACCATGCAACTTCGAAAGAATCAC...CTTTCCCAGTAACAAAGCTATGCTTGGTGATGACCTAGTAGAGTAGAAATTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CAA 90 bp AACCTAAGAAAGGTGTACAACTGTCCTGACATTGGATTGCCTGCTTACTGTGAAGGAGATAAGTTTTGTTaGCTATTGCTGACAGGAAAG +
Preference number: 5 (lower is better)
Translates to: NLRKVYNCPDIGLPAYCEGDKFC*LLLTGK
Trigger: CTTTCCTGTCAGCAATAGCAAACAAAACTTATCTCC...TTCACAGTAAGCAGGCAATCCAATGTCAGGACAGTTGTACACCTTTCTTAGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS-3UTR CAA 90 bp TGGTTTAGGAAATCACTCCTGTATGCTAGCAGGAATGTTGCTGGCAAGACACTTCTTAGTGCTGCATCCTaGTGTATGGTTTTAAAAAGT +
Preference number: 5 (lower is better)
Translates to: WFRKSLLYASRNVAGKTLLSAAS*CMVLKS
Trigger: ACTTTTTAAAACCATACACAAGGATGCAGCACTAAG...AAGTGTCTTGCCAGCAACATTCCTGCTAGCATACAGGAGTGATTTCCTAAACCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS GCA 90 bp CAAACACACAGCTCCATGGAAAATAATAGCCCAGAAATAAATCTCTaGATTTTCAGCCAACAGAAGTTCCACAAAGACACCAAGAACACA +
Preference number: 5 (lower is better)
Translates to: QTHSSMENNSPEINL*IFSQQKFHKDTKNT
Trigger: TGTGTTCTTGGTGTCTTTGTGGAACTTCTGTTGGCTGAAAATGCAGAGATTTATTTCTGGGCTATTATTTTCCATGGAGCTGTGTGTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000492117.1
CDS-3UTR CAA 90 bp TCTCATCATGCCTCATCAGAATTTTCCGTTAACAAGTGTCAGAGAATCTGTAATAAGTTAACTCAGATATaGGCACATGCAAGTCCAGCC +
Preference number: 5 (lower is better)
Translates to: SHHASSEFSVNKCQRICNKLTQI*AHASPA
Trigger: GGCTGGACTTGCATGTGCCAATATCTGAGTTAACTT...ATTACAGATTCTCTGACACTTGTTAACGGAAAATTCTGATGAGGCATGATGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317961.9
CDS TCA 72 bp GACAGTAGCTCCAGGTCTGGGCGGAAGGTGGTGCGGTaGAAGGTGCAGGGACAGACTGGGTTAGAGGCCACT +
Preference number: 6 (lower is better)
Translates to: DSSSRSGRKVVR*KVQGQTGLEAT
Trigger: AGTGGCCTCTAACCCAGTCTGTCCCTGCACCTTTCACCGCACCACCTTCCGCCCAGACCTGGAGCTACTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000469599.6
ENST00000492117.1
CDS CAA 90 bp TGCAGCTCAGCCCGGGCCTTGTCCACAGAAGGGCTGGAGGCTATCTaGGCACCCATAACCAAAAGCCCCTGCATGATGACCAGAGAGCCC +
Preference number: 6 (lower is better)
Translates to: CSSARALSTEGLEAI*APITKSPCMMTREP
Trigger: GGGCTCTCTGGTCATCATGCAGGGGCTTTTGGTTATGGGTGCCAAGATAGCCTCCAGCCCTTCTGTGGACAAGGCCCGGGCTGAGCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000469599.6
ENST00000492117.1
ENST00000541639.5
CDS CAA 72 bp GCCCGGGCCTTGTCCACAGAAGGGCTGGAGGCTATCTaGGCACCCATAACCAAAAGCCCCTGCATGATGACC +
Preference number: 6 (lower is better)
Translates to: ARALSTEGLEAI*APITKSPCMMT
Trigger: GGTCATCATGCAGGGGCTTTTGGTTATGGGTGCCAAGATAGCCTCCAGCCCTTCTGTGGACAAGGCCCGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000469599.6
ENST00000492117.1
ENST00000541639.5
CDS CCA 72 bp CAGTGGCTGAAGTGTAGACTGAGGCCTCCTCTGGTCTaGGTTTGGCCTGTAGCTGTTGGCGAAGCTCAGCCA +
Preference number: 6 (lower is better)
Translates to: QWLKCRLRPPLV*VWPVAVGEAQP
Trigger: TGGCTGAGCTTCGCCAACAGCTACAGGCCAAACCCAGACCAGAGGAGGCCTCAGTCTACACTTCAGCCACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000415360.1
ENST00000440077.5
ENST00000469599.6
ENST00000492117.1
ENST00000541639.5
CDS CCA 72 bp GCGGAAGGTGGTGCGGTGAAAGGTGCAGGGACAGACTaGGTTAGAGGCCACTCTTGGTCTTATCCTCCATGG +
Preference number: 6 (lower is better)
Translates to: AEGGAVKGAGTD*VRGHSWSYPPW
Trigger: CCATGGAGGATAAGACCAAGAGTGGCCTCTAACCCAGTCTGTCCCTGCACCTTTCACCGCACCACCTTCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000469599.6
ENST00000492117.1
CDS CAA 72 bp GCAATCGTCAGGGATCCTAGTTTTACAGCCACCATCTaGACCTCCGGGCCCTGCAGTGTGGTACGAGCCGTC +
Preference number: 6 (lower is better)
Translates to: AIVRDPSFTATI*TSGPCSVVRAV
Trigger: GACGGCTCGTACCACACTGCAGGGCCCGGAGGTCAAGATGGTGGCTGTAAAACTAGGATCCCTGACGATTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000382806.6
ENST00000440077.5
ENST00000541639.5
CDS TCA 72 bp CAATCGTCAGGGATCCTAGTTTTACAGCCACCATCTTaGCCTCCGGGCCCTGCAGTGTGGTACGAGCCGTCT +
Preference number: 6 (lower is better)
Translates to: QSSGILVLQPPS*PPGPAVWYEPS
Trigger: AGACGGCTCGTACCACACTGCAGGGCCCGGAGGTCAAGATGGTGGCTGTAAAACTAGGATCCCTGACGATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000382806.6
ENST00000440077.5
ENST00000541639.5
CDS TCA 72 bp GGTTGTGGACACCCCACCTCAGCCAACACTGAGCCCTaGTGTGGACTCAACCTTGTAAGGAAAGCTTCTCCA +
Preference number: 6 (lower is better)
Translates to: GCGHPTSANTEP*CGLNLVRKASP
Trigger: TGGAGAAGCTTTCCTTACAAGGTTGAGTCCACATCAGGGCTCAGTGTTGGCTGAGGTGGGGTGTCCACAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492117.1
CDS GCA 72 bp GTTCGTAATGTGATCGTAGCAGGGAGCCAATGTTTTTaGCTGGTGGGTAGTGGAGACGCTGGGCAACTCGAG +
Preference number: 6 (lower is better)
Translates to: VRNVIVAGSQCF*LVGSGDAGQLE
Trigger: CTCGAGTTGCCCAGCGTCTCCACTACCCACCAGGCAAAAACATTGGCTCCCTGCTACGATCACATTACGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000317961.9
ENST00000440077.5
ENST00000447300.1
ENST00000541639.5
CDS CAA 90 bp AGTTGCATGGTTGTCTTAGTGCAGGGCTCTAGGCTCAAGTGCTGCTaGAGCAATGTTGATGACACGTTCCCACCTCCACTTTGCTCATCC +
Preference number: 6 (lower is better)
Translates to: SCMVVLVQGSRLKCC*SNVDDTFPPPLCSS
Trigger: GGATGAGCAAAGTGGAGGTGGGAACGTGTCATCAACATTGCTCAAGCAGCACTTGAGCCTAGAGCCCTGCACTAAGACAACCATGCAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000447300.1
ENST00000541639.5
CDS GCA 72 bp ATGGTTGTCTTAGTGCAGGGCTCTAGGCTCAAGTGCTaGTTGAGCAATGTTGATGACACGTTCCCACCTCCA +
Preference number: 6 (lower is better)
Translates to: MVVLVQGSRLKC*LSNVDDTFPPP
Trigger: TGGAGGTGGGAACGTGTCATCAACATTGCTCAAGCAGCACTTGAGCCTAGAGCCCTGCACTAAGACAACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000447300.1
ENST00000541639.5
CDS GCA 72 bp TGCATGGTTGTCTTAGTGCAGGGCTCTAGGCTCAAGTaGTGCTTGAGCAATGTTGATGACACGTTCCCACCT +
Preference number: 6 (lower is better)
Translates to: CMVVLVQGSRLK*CLSNVDDTFPP
Trigger: AGGTGGGAACGTGTCATCAACATTGCTCAAGCAGCACTTGAGCCTAGAGCCCTGCACTAAGACAACCATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000447300.1
ENST00000541639.5
CDS CAA 72 bp GTTGTCTTAGTGCAGGGCTCTAGGCTCAAGTGCTGCTaGAGCAATGTTGATGACACGTTCCCACCTCCACTT +
Preference number: 6 (lower is better)
Translates to: VVLVQGSRLKCC*SNVDDTFPPPL
Trigger: AAGTGGAGGTGGGAACGTGTCATCAACATTGCTCAAGCAGCACTTGAGCCTAGAGCCCTGCACTAAGACAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000447300.1
ENST00000541639.5
CDS CAA 90 bp TCAGACTCCAGTGCCCTTAGCTCTTCAAAGCCTGGAGAGTGTAAGTaGCAACAGGTAGGCAGTGTTAGCAGAAAAGGAAGGTTGAGAATA +
Preference number: 6 (lower is better)
Translates to: SDSSALSSSKPGECK*QQVGSVSRKGRLRI
Trigger: TATTCTCAACCTTCCTTTTCTGCTAACACTGCCTACCTGTTGCAACTTACACTCTCCAGGCTTTGAAGAGCTAAGGGCACTGGAGTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000478891.1
CDS GCA 72 bp GTCTGTGGAAGGTGTCAGGAACATATTTTCACGGTCTaGTTTCTCCTGATAATGTTCTTCTTCTCGGCCCAC +
Preference number: 6 (lower is better)
Translates to: VCGRCQEHIFTV*FLLIMFFFSAH
Trigger: GTGGGCCGAGAAGAAGAACATTATCAGGAGAAAGCAGACCGTGAAAATATGTTCCTGACACCTTCCACAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000469599.6
ENST00000492117.1
ENST00000541639.5
CDS CCA 72 bp GGAAGGATATTTCCTTGCATGCTGTACACACAGAGATaGTATGGGAACACATATCTCCGCCACTTCCAGGAA +
Preference number: 6 (lower is better)
Translates to: GRIFPCMLYTQR*YGNTYLRHFQE
Trigger: TTCCTGGAAGTGGCGGAGATATGTGTTCCCATACCATCTCTGTGTGTACAGCATGCAAGGAAATATCCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000469599.6
ENST00000485154.1
CDS GCA 72 bp TCGGACTTGAAGGAATCAGCCATTTCACCAAAACTCTaGAAACTGTACTCCTGGGTAGCCTGTTCAAATCCA +
Preference number: 6 (lower is better)
Translates to: SDLKESAISPKL*KLYSWVACSNP
Trigger: TGGATTTGAACAGGCTACCCAGGAGTACAGTTTGCAGAGTTTTGGTGAAATGGCTGATTCCTTCAAGTCCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000447300.1
ENST00000541639.5
CDS GCA 72 bp GGTCCATATTGTAAACTCAAAAATAATGCCCTGTTTTaGCACTGTCAACTAACACAGTGCCGGAGGTCCCAG +
Preference number: 6 (lower is better)
Translates to: GPYCKLKNNALF*HCQLTQCRRSQ
Trigger: CTGGGACCTCCGGCACTGTGTTAGTTGACAGTGGCAAAACAGGGCATTATTTTTGAGTTTACAATATGGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000492117.1
CDS CAA 72 bp GTCGCATACTCCTTCTCCTCAGGAGATAAGTTTTGTTaGCTATTGCTGACAGGAAAGCCACTGCCAAATTCT +
Preference number: 6 (lower is better)
Translates to: VAYSFSSGDKFC*LLLTGKPLPNS
Trigger: AGAATTTGGCAGTGGCTTTCCTGTCAGCAATAGCAAACAAAACTTATCTCCTGAGGAGAAGGAGTATGCGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000440077.5
ENST00000447300.1
CDS CCA 72 bp TTCACTCTAGTTTGGGCCTCCAGTTCATTTAGCCTTTaGACGCGAGGAGTAAATCTGAAATTGTCAACTTCT +
Preference number: 6 (lower is better)
Translates to: FTLVWASSSFSL*TRGVNLKLSTS
Trigger: AGAAGTTGACAATTTCAGATTTACTCCTCGCGTCCAAAGGCTAAATGAACTGGAGGCCCAAACTAGAGTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000317961.9
ENST00000382806.6
ENST00000447300.1
ENST00000541639.5
CDS CCA 72 bp CCTTCCTCAATCACAATCTCCAGTTCATTTAGCCTTTaGACGCGAGGAGTAAATCTGAAATTGTCAACTTCT +
Preference number: 6 (lower is better)
Translates to: PSSITISSSFSL*TRGVNLKLSTS
Trigger: AGAAGTTGACAATTTCAGATTTACTCCTCGCGTCCAAAGGCTAAATGAACTGGAGATTGTGATTGAGGAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000440077.5
CDS CAA 72 bp AGACTTTGTCTCTTCTCCTCAGGAGATAAGTTTTGTTaGCTATTGCTGACAGGAAAGCCACTGCCAAATTCT +
Preference number: 6 (lower is better)
Translates to: RLCLFSSGDKFC*LLLTGKPLPNS
Trigger: AGAATTTGGCAGTGGCTTTCCTGTCAGCAATAGCAAACAAAACTTATCTCCTGAGGAGAAGAGACAAAGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541639.5
CDS GCA 72 bp AGCTCCATGGAAAATAATAGCCCAGAAATAAATCTCTaGATTTTCAGCCAACAGAAGTTCCACAAAGACACC +
Preference number: 6 (lower is better)
Translates to: SSMENNSPEINL*IFSQQKFHKDT
Trigger: GGTGTCTTTGTGGAACTTCTGTTGGCTGAAAATGCAGAGATTTATTTCTGGGCTATTATTTTCCATGGAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000492117.1
CDS CCA 72 bp CAACTGTGTCTTAGAACATGCTGCCTCTGGTATTCCTaGTCACAAGAGGTCCATATTGTAAACTCAAAAATA +
Preference number: 6 (lower is better)
Translates to: QLCLRTCCLWYS*SQEVHIVNSKI
Trigger: TATTTTTGAGTTTACAATATGGACCTCTTGTGACCAGGAATACCAGAGGCAGCATGTTCTAAGACACAGTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000492117.1
CDS GCA 72 bp TTTAATTATTTCAGTCTGGAAGGATATTTCCTTGCATaGTGTACACACAGAGATGGTATGGGAACACATATC +
Preference number: 6 (lower is better)
Translates to: FNYFSLEGYFLA*CTHRDGMGTHI
Trigger: GATATGTGTTCCCATACCATCTCTGTGTGTACAGCATGCAAGGAAATATCCTTCCAGACTGAAATAATTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000469599.6
ENST00000485154.1