RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IRGM (Homo sapiens)

Ensembl gene IDs: ENSG00000237693

Ensembl transcript IDs: ENST00000520549.1, ENST00000522154.1, ENST00000609660.1

Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGAAGGAATATTTCTGGGCCTTGTGGAATTCTCTGGAGTACTCTTaGGGTATTTCTCATGGCAGGCCAGCTGAGCTGGGCCTTGCTATT +
Preference number: 1 (lower is better)
Translates to: WKEYFWALWNSLEYS*GISHGRPAELGLAI
Trigger: AATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGAGAAATACCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATATTCCTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
3UTR-3UTR TCA 90 bp GATTCATTTAACAAACGTTTCTTAAGTACCCAGTATATGTCATATGCACTGGCTTCATGGCAGGCCAGCTaGGCTGGGCCTTGCTATTTC +
Preference number: 2 (lower is better)
Translates to: DSFNKRFLSTQYMSYALASWQAS*AGPCYF
Trigger: GAAATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGA...AGCCAGTGCATATGACATATACTGGGTACTTAAGAAACGTTTGTTAAATGAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
3UTR-3UTR GCA 90 bp CCCAGTATATGTCATATGCACTGGCTAGCTGTTGAATATCCTGAGCAGATTTACGCTATTTCTAGGGCTTaGGGAGCTGATCTGTATTTC +
Preference number: 2 (lower is better)
Translates to: PSICHMHWLAVEYPEQIYAISRA*GADLYF
Trigger: GAAATACAGATCAGCTCCGCAAGCCCTAGAAATAGC...GTAAATCTGCTCAGGATATTCAACAGCTAGCCAGTGCATATGACATATACTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
3UTR-3UTR CCA 90 bp CCCAGTATATGTCATATGCACTGGCTAGCTGTTGAATATCCTGAGCAGATTTACCCTTGTGGAATTCTCTaGAGTACTCTTGAGGTATTT +
Preference number: 2 (lower is better)
Translates to: PSICHMHWLAVEYPEQIYPCGIL*STLEVF
Trigger: AAATACCTCAAGAGTACTCCAGAGAATTCCACAAGG...GTAAATCTGCTCAGGATATTCAACAGCTAGCCAGTGCATATGACATATACTGGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
3UTR-3UTR CCA 90 bp GATTCATTTAACAAACGTTTCTTAAGTACCCAGTATATGTCATATGCACTGGCTTGGAAGGAATATTTCTaGGCCTTGTGGAATTCTCTG +
Preference number: 2 (lower is better)
Translates to: DSFNKRFLSTQYMSYALAWKEYF*ALWNSL
Trigger: CAGAGAATTCCACAAGGCCCAGAAATATTCCTTCCA...AGCCAGTGCATATGACATATACTGGGTACTTAAGAAACGTTTGTTAAATGAATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
3UTR TCA 72 bp TATTTCTGGGCCTTGTGGAATTCTCTGGAGTACTCTTaGGGTATTTCTCATGGCAGGCCAGCTGAGCTGGGC +
Preference number: 3 (lower is better)
Translates to: YFWALWNSLEYS*GISHGRPAELG
Trigger: GCCCAGCTCAGCTGGCCTGCCATGAGAAATACCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
3UTR CCA 72 bp TCTGGAAGGAATATTTCTGGGCCTTGTGGAATTCTCTaGAGTACTCTTGAGGTATTTCTCATGGCAGGCCAG +
Preference number: 3 (lower is better)
Translates to: SGRNISGPCGIL*STLEVFLMAGQ
Trigger: CTGGCCTGCCATGAGAAATACCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATATTCCTTCCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
3UTR-3UTR CAA 90 bp TCATTTAACAAACGTTTCTTAAGTACCCAGTATATGTCATATGCACTGGCTAGCCAGCTGAGCTGGGCCTaGCTATTTCTAGGGCTTGCG +
Preference number: 3 (lower is better)
Translates to: SFNKRFLSTQYMSYALASQLSWA*LFLGLA
Trigger: CGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTG...GCTAGCCAGTGCATATGACATATACTGGGTACTTAAGAAACGTTTGTTAAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
3UTR-3UTR CAA 90 bp TCATTTAACAAACGTTTCTTAAGTACCCAGTATATGTCATATGCACTGGCTAGCTTCTCTGGAGTACTCTaGAGGTATTTCTCATGGCAG +
Preference number: 3 (lower is better)
Translates to: SFNKRFLSTQYMSYALASFSGVL*RYFSWQ
Trigger: CTGCCATGAGAAATACCTCAAGAGTACTCCAGAGAA...GCTAGCCAGTGCATATGACATATACTGGGTACTTAAGAAACGTTTGTTAAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR TCA 90 bp GGCAGGCCAGCTGAGCTGGGCCTTGCTATTTCTAGGGCTTGCGGAGCTGATCTGTCATGGCAGGCCAGCTaGGCTGGGCCTTGCTATTTC +
Preference number: 4 (lower is better)
Translates to: GRPAELGLAISRACGADLSWQAS*AGPCYF
Trigger: GAAATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGA...CAGATCAGCTCCGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTGGCCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR TCA 90 bp TCTCATGGCAGGCCAGCTGAGCTGGGCCTTGCTATTTCTAGGGCTTGCGGAGCTTCTCTGGAGTACTCTTaGGGTATTTCTCATGGCAGG +
Preference number: 4 (lower is better)
Translates to: SHGRPAELGLAISRACGASLEYS*GISHGR
Trigger: CCTGCCATGAGAAATACCTCAAGAGTACTCCAGAGA...AGCTCCGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp TCTCATGGCAGGCCAGCTGAGCTGGGCCTTGCTATTTCTAGGGCTTGCGGAGCTGAGCTCCGCTCCTTCTaGAGATTTTCCAGGACATTT +
Preference number: 4 (lower is better)
Translates to: SHGRPAELGLAISRACGAELRSF*RFSRTF
Trigger: AAATGTCCTGGAAAATCTCCAGAAGGAGCGGAGCTC...AGCTCCGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp TCTCATGGCAGGCCAGCTGAGCTGGGCCTTGCTATTTCTAGGGCTTGCGGAGCTTTTGGGTACACTTGTTaGTTTCTAGAGCTCCGCTCC +
Preference number: 4 (lower is better)
Translates to: SHGRPAELGLAISRACGAFGYTC*FLELRS
Trigger: GGAGCGGAGCTCTAGAAACCAACAAGTGTACCCAAA...AGCTCCGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR GCA 90 bp TCTCATGGCAGGCCAGCTGAGCTGGGCCTTGCTATTTCTAGGGCTTGCGGAGCTACATTTTCTCTGATCTaGAGTAGCTGCACTTCTGGG +
Preference number: 4 (lower is better)
Translates to: SHGRPAELGLAISRACGATFSLI*SSCTSG
Trigger: CCCAGAAGTGCAGCTACTGCAGATCAGAGAAAATGT...AGCTCCGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp ATTTCTCATGGCAGGCCAGCTGAGCTGGGCCTTGCTATTTCTAGGGCTTGCGGAAGAGGTACGTGGCTGTaGTTTGGGTACACTTGTTGG +
Preference number: 4 (lower is better)
Translates to: ISHGRPAELGLAISRACGRGTWL*FGYTCW
Trigger: CCAACAAGTGTACCCAAACCACAGCCACGTACCTCT...TCCGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGAGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp ATTTCTCATGGCAGGCCAGCTGAGCTGGGCCTTGCTATTTCTAGGGCTTGCGGACAAGCAAGAGGTACGTaGCTGTGGTTTGGGTACACT +
Preference number: 4 (lower is better)
Translates to: ISHGRPAELGLAISRACGQARGT*LWFGYT
Trigger: AGTGTACCCAAACCACAGCCACGTACCTCTTGCTTG...TCCGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGAGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR GCA 90 bp ATTTCTCATGGCAGGCCAGCTGAGCTGGGCCTTGCTATTTCTAGGGCTTGCGGAGCTATTTCTAGGGCTTaGGGAGCTGATCTGTATTTC +
Preference number: 4 (lower is better)
Translates to: ISHGRPAELGLAISRACGAISRA*GADLYF
Trigger: GAAATACAGATCAGCTCCGCAAGCCCTAGAAATAGC...TCCGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGAGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp GGCAGGCCAGCTGAGCTGGGCCTTGCTATTTCTAGGGCTTGCGGAGCTGATCTGATATGTCATATGCACTaGCTAGCTGTTGAATATCCT +
Preference number: 4 (lower is better)
Translates to: GRPAELGLAISRACGADLICHMH*LAVEYP
Trigger: AGGATATTCAACAGCTAGCCAGTGCATATGACATAT...CAGATCAGCTCCGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTGGCCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR GCA 90 bp CTTCTGGAAGGAATATTTCTGGGCCTTGTGGAATTCTCTGGAGTACTCTTGAGGCTGATCTGCAGTAGCTaGACTTCTGGGAGGGCACCT +
Preference number: 4 (lower is better)
Translates to: LLEGIFLGLVEFSGVLLRLICSS*TSGRAP
Trigger: AGGTGCCCTCCCAGAAGTGCAGCTACTGCAGATCAG...CCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATATTCCTTCCAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR TCA 90 bp GATTCATTTAACAAACGTTTCTTAAGTACCCAGTATATGTCATATGCACTGGCTGGAGGGCACCTGTGCTaGGGTCCATGTCTAGCTTGG +
Preference number: 4 (lower is better)
Translates to: DSFNKRFLSTQYMSYALAGGHLC*GPCLAW
Trigger: CCAAGCTAGACATGGACCTCAGCACAGGTGCCCTCC...AGCCAGTGCATATGACATATACTGGGTACTTAAGAAACGTTTGTTAAATGAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp CTTCTGGAAGGAATATTTCTGGGCCTTGTGGAATTCTCTGGAGTACTCTTGAGGCCTTGTGGAATTCTCTaGAGTACTCTTGAGGTATTT +
Preference number: 4 (lower is better)
Translates to: LLEGIFLGLVEFSGVLLRPCGIL*STLEVF
Trigger: AAATACCTCAAGAGTACTCCAGAGAATTCCACAAGG...CCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATATTCCTTCCAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp TCATTTAACAAACGTTTCTTAAGTACCCAGTATATGTCATATGCACTGGCTAGCTGTCCTCAGCGGTTTTaGCAAGCATCACATGATTCA +
Preference number: 4 (lower is better)
Translates to: SFNKRFLSTQYMSYALASCPQRF*QASHDS
Trigger: TGAATCATGTGATGCTTGCCAAAACCGCTGAGGACA...GCTAGCCAGTGCATATGACATATACTGGGTACTTAAGAAACGTTTGTTAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp TCATTTAACAAACGTTTCTTAAGTACCCAGTATATGTCATATGCACTGGCTAGCTACGTGGCTGTGGTTTaGGTACACTTGTTGGTTTCT +
Preference number: 4 (lower is better)
Translates to: SFNKRFLSTQYMSYALASYVAVV*VHLLVS
Trigger: AGAAACCAACAAGTGTACCCAAACCACAGCCACGTA...GCTAGCCAGTGCATATGACATATACTGGGTACTTAAGAAACGTTTGTTAAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp GATTCATTTAACAAACGTTTCTTAAGTACCCAGTATATGTCATATGCACTGGCTGGTCCATGTCTAGCTTaGTCCAGACAATGTAGAACT +
Preference number: 4 (lower is better)
Translates to: DSFNKRFLSTQYMSYALAGPCLA*SRQCRT
Trigger: AGTTCTACATTGTCTGGACCAAGCTAGACATGGACC...AGCCAGTGCATATGACATATACTGGGTACTTAAGAAACGTTTGTTAAATGAATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp TCATTTAACAAACGTTTCTTAAGTACCCAGTATATGTCATATGCACTGGCTAGCTGGAAGGAATATTTCTaGGCCTTGTGGAATTCTCTG +
Preference number: 4 (lower is better)
Translates to: SFNKRFLSTQYMSYALASWKEYF*ALWNSL
Trigger: CAGAGAATTCCACAAGGCCCAGAAATATTCCTTCCA...GCTAGCCAGTGCATATGACATATACTGGGTACTTAAGAAACGTTTGTTAAATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CCA 90 bp TCATTTAACAAACGTTTCTTAAGTACCCAGTATATGTCATATGCACTGGCTAGCCGTATAGTTTTCTTCTaGAAGGAATATTTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: SFNKRFLSTQYMSYALASRIVFF*KEYFWA
Trigger: GGCCCAGAAATATTCCTTCCAGAAGAAAACTATACG...GCTAGCCAGTGCATATGACATATACTGGGTACTTAAGAAACGTTTGTTAAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS GCA 90 bp GCTCATCAGGCGGGGGAGCACACGTGCAGAGCAGTACTGAAATGCTaGAATATACGTGAAGTAAGCCACCAGCCTTTGACCCCCGAGCTT +
Preference number: 5 (lower is better)
Translates to: AHQAGEHTCRAVLKC*NIREVSHQPLTPEL
Trigger: AAGCTCGGGGGTCAAAGGCTGGTGGCTTACTTCACGTATATTGCAGCATTTCAGTACTGCTCTGCACGTGTGCTCCCCCGCCTGATGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS GCA 90 bp CCTCATCAGGCGGGGGAGCACACGTGCAGAGCAGTACTGAAATGCTaGAATATACGTGAAGTAAGCCACCAGCCTTTGACCCCCGAGCTT +
Preference number: 5 (lower is better)
Translates to: PHQAGEHTCRAVLKC*NIREVSHQPLTPEL
Trigger: AAGCTCGGGGGTCAAAGGCTGGTGGCTTACTTCACGTATATTGCAGCATTTCAGTACTGCTCTGCACGTGTGCTCCCCCGCCTGATGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000609660.1
CDS GCA 90 bp GAGCTCCGCTCCTTCTGGAGATTTTCCAGGACATTTTCTCTGATCTaGAGTAGCTGCACTTCTGGGAGGGCACCTGTGCTGAGGTCCATG +
Preference number: 5 (lower is better)
Translates to: ELRSFWRFSRTFSLI*SSCTSGRAPVLRSM
Trigger: CATGGACCTCAGCACAGGTGCCCTCCCAGAAGTGCAGCTACTGCAGATCAGAGAAAATGTCCTGGAAAATCTCCAGAAGGAGCGGAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS GCA 90 bp TTACCTCATCAGGCGGGGGAGCACACGTGCAGAGCAGTACTGAAATaGTGCAATATACGTGAAGTAAGCCACCAGCCTTTGACCCCCGAG +
Preference number: 5 (lower is better)
Translates to: LPHQAGEHTCRAVLK*CNIREVSHQPLTPE
Trigger: CTCGGGGGTCAAAGGCTGGTGGCTTACTTCACGTATATTGCAGCATTTCAGTACTGCTCTGCACGTGTGCTCCCCCGCCTGATGAGGTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000609660.1
CDS GCA 90 bp GCATTTCCATCAGGTAGTTCTCCAGGGTTGTGGTGGCAGACCCTGTaGCAGGCAGGTCCCACAACACCACATTTGAAAAGTGGGAAGAGA +
Preference number: 5 (lower is better)
Translates to: AFPSGSSPGLWWQTL*QAGPTTPHLKSGKR
Trigger: TCTCTTCCCACTTTTCAAATGTGGTGTTGTGGGACCTGCCTGGCACAGGGTCTGCCACCACAACCCTGGAGAACTACCTGATGGAAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS GCA 90 bp CATACCCGCTCCTTCTGGAGATTTTCCAGGACATTTTCTCTGATCTaGAGTAGCTGCACTTCTGGGAGGGCACCTGTGCTGAGGTCCATG +
Preference number: 5 (lower is better)
Translates to: HTRSFWRFSRTFSLI*SSCTSGRAPVLRSM
Trigger: CATGGACCTCAGCACAGGTGCCCTCCCAGAAGTGCAGCTACTGCAGATCAGAGAAAATGTCCTGGAAAATCTCCAGAAGGAGCGGGTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS-3UTR CAA 90 bp ATTTCTCATGGCAGGCCAGCTGAGCTGGGCCTTGCTATTTCTAGGGCTTGCGGAGTGGTTTGGGTACACTaGTTGGTTTCTAGAGCTCCG +
Preference number: 5 (lower is better)
Translates to: ISHGRPAELGLAISRACGVVWVH*LVSRAP
Trigger: CGGAGCTCTAGAAACCAACAAGTGTACCCAAACCAC...TCCGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTGGCCTGCCATGAGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS TCA 90 bp TTCGTGGTTTCACTGACTCAGGAGCGAAGCTGCAGACCTTCGAAGTaGGAGTTACAGCTCTTCAGGCGGCGAGTCTGGAGTTGTTCGTTT +
Preference number: 5 (lower is better)
Translates to: FVVSLTQERSCRPSK*ELQLFRRRVWSCSF
Trigger: AAACGAACAACTCCAGACTCGCCGCCTGAAGAGCTGTAACTCTCACTTCGAAGGTCTGCAGCTTCGCTCCTGAGTCAGTGAAACCACGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS GCA 90 bp TCGAAGGGCACTGATGAAGGTGGACATCCCATTGCCAGAGTCCCCTaGCATAGTGATGTTAACTGGTGTCCTGGACACTATCTTCAGAGT +
Preference number: 5 (lower is better)
Translates to: SKGTDEGGHPIARVP*HSDVNWCPGHYLQS
Trigger: ACTCTGAAGATAGTGTCCAGGACACCAGTTAACATCACTATGGCAGGGGACTCTGGCAATGGGATGTCCACCTTCATCAGTGCCCTTCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CCA 90 bp TCACCTCTGGCAAGTTCCCATCTGCTGAGGCTTTCTCAACATTCATaGCTTCCATCTTCAATAAAATACCCCAATGCTGGCCAGGCGCCG +
Preference number: 5 (lower is better)
Translates to: SPLASSHLLRLSQHS*LPSSIKYPNAGQAP
Trigger: CGGCGCCTGGCCAGCATTGGGGTATTTTATTGAAGATGGAAGCCATGAATGTTGAGAAAGCCTCAGCAGATGGGAACTTGCCAGAGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS TCA 90 bp CTTATGGTGTGGCAAAAAGAGGTTAAGGATGCAGCTAATAGAGTGTaGGGGGCACTTGGGACACTCTGTCGTATCTGTGGGCACTGGAGT +
Preference number: 5 (lower is better)
Translates to: LMVWQKEVKDAANRV*GALGTLCRICGHWS
Trigger: ACTCCAGTGCCCACAGATACGACAGAGTGTCCCAAGTGCCCCTCACACTCTATTAGCTGCATCCTTAACCTCTTTTTGCCACACCATAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS TCA 90 bp ATAGGAGGCACATCTTTGGGTAGCTTTTACCAGCTCAGTAGGAGGTaGGGCCTTACCCTCATGTCCTGTGTTTCGAAGGGCACTGATGAA +
Preference number: 5 (lower is better)
Translates to: IGGTSLGSFYQLSRR*GLTLMSCVSKGTDE
Trigger: TTCATCAGTGCCCTTCGAAACACAGGACATGAGGGTAAGGCCTCACCTCCTACTGAGCTGGTAAAAGCTACCCAAAGATGTGCCTCCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CCA 90 bp GGTGGACATCCCATTGCCAGAGTCCCCTGCCATAGTGATGTTAACTaGTGTCCTGGACACTATCTTCAGAGTCTCCTTGATGTTAGAGAT +
Preference number: 5 (lower is better)
Translates to: GGHPIARVPCHSDVN*CPGHYLQSLLDVRD
Trigger: ATCTCTAACATCAAGGAGACTCTGAAGATAGTGTCCAGGACACCAGTTAACATCACTATGGCAGGGGACTCTGGCAATGGGATGTCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS-3UTR CAA 90 bp CCCAGTATATGTCATATGCACTGGCTAGCTGTTGAATATCCTGAGCAGATTTACCAGCTGAGCTGGGCCTaGCTATTTCTAGGGCTTGCG +
Preference number: 5 (lower is better)
Translates to: PSICHMHWLAVEYPEQIYQLSWA*LFLGLA
Trigger: CGCAAGCCCTAGAAATAGCAAGGCCCAGCTCAGCTG...GTAAATCTGCTCAGGATATTCAACAGCTAGCCAGTGCATATGACATATACTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CAA 90 bp CTTCTGGAAGGAATATTTCTGGGCCTTGTGGAATTCTCTGGAGTACTCTTGAGGGTACGTGGCTGTGGTTaGGGTACACTTGTTGGTTTC +
Preference number: 5 (lower is better)
Translates to: LLEGIFLGLVEFSGVLLRVRGCG*GTLVGF
Trigger: GAAACCAACAAGTGTACCCAAACCACAGCCACGTAC...CCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATATTCCTTCCAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS CCA 90 bp CAATTCTTAAAGGCTGCGTGTCCGGAGTTTGTTCCTTCTGATGTTTaGATGTGTTCAGAGTTTCTTCCTTCCGGTGGGTTCGTGGTTTCA +
Preference number: 5 (lower is better)
Translates to: QFLKAACPEFVPSDV*MCSEFLPSGGFVVS
Trigger: TGAAACCACGAACCCACCGGAAGGAAGAAACTCTGAACACATCCAAACATCAGAAGGAACAAACTCCGGACACGCAGCCTTTAAGAATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS GCA 90 bp GTCCTCAGCGGTTTTGGCAAGCATCACATGATTCATGCTGAATTGTaGAGATGCAACCATGATGAAGTCATACCGGTTGAACTGCATTTC +
Preference number: 5 (lower is better)
Translates to: VLSGFGKHHMIHAEL*RCNHDEVIPVELHF
Trigger: GAAATGCAGTTCAACCGGTATGACTTCATCATGGTTGCATCTGCACAATTCAGCATGAATCATGTGATGCTTGCCAAAACCGCTGAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS GCA 90 bp AGCGGTTTTGGCAAGCATCACATGATTCATGCTGAATTGTGCAGATaGAACCATGATGAAGTCATACCGGTTGAACTGCATTTCCATCAG +
Preference number: 5 (lower is better)
Translates to: SGFGKHHMIHAELCR*NHDEVIPVELHFHQ
Trigger: CTGATGGAAATGCAGTTCAACCGGTATGACTTCATCATGGTTGCATCTGCACAATTCAGCATGAATCATGTGATGCTTGCCAAAACCGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS-3UTR CAA 90 bp AATATTTCTGGGCCTTGTGGAATTCTCTGGAGTACTCTTGAGGTATTTCTCATGGTTTGGGTACACTTGTaGGTTTCTAGAGCTCCGCTC +
Preference number: 5 (lower is better)
Translates to: NISGPCGILWSTLEVFLMVWVHL*VSRAPL
Trigger: GAGCGGAGCTCTAGAAACCAACAAGTGTACCCAAAC...CATGAGAAATACCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS-3UTR CAA 90 bp AATATTTCTGGGCCTTGTGGAATTCTCTGGAGTACTCTTGAGGTATTTCTCATGTTCTCTGGAGTACTCTaGAGGTATTTCTCATGGCAG +
Preference number: 5 (lower is better)
Translates to: NISGPCGILWSTLEVFLMFSGVL*RYFSWQ
Trigger: CTGCCATGAGAAATACCTCAAGAGTACTCCAGAGAA...CATGAGAAATACCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS TCA 72 bp TCACTGACTCAGGAGCGAAGCTGCAGACCTTCGAAGTaGGAGTTACAGCTCTTCAGGCGGCGAGTCTGGAGT +
Preference number: 6 (lower is better)
Translates to: SLTQERSCRPSK*ELQLFRRRVWS
Trigger: ACTCCAGACTCGCCGCCTGAAGAGCTGTAACTCTCACTTCGAAGGTCTGCAGCTTCGCTCCTGAGTCAGTGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS TCA 72 bp TCTGCAGTAGCTGCACTTCTGGGAGGGCACCTGTGCTaGGGTCCATGTCTAGCTTGGTCCAGACAATGTAGA +
Preference number: 6 (lower is better)
Translates to: SAVAALLGGHLC*GPCLAWSRQCR
Trigger: TCTACATTGTCTGGACCAAGCTAGACATGGACCTCAGCACAGGTGCCCTCCCAGAAGTGCAGCTACTGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000520549.1
ENST00000522154.1
CDS GCA 72 bp GCGGGGGAGCACACGTGCAGAGCAGTACTGAAATGCTaGAATATACGTGAAGTAAGCCACCAGCCTTTGACC +
Preference number: 6 (lower is better)
Translates to: AGEHTCRAVLKC*NIREVSHQPLT
Trigger: GGTCAAAGGCTGGTGGCTTACTTCACGTATATTGCAGCATTTCAGTACTGCTCTGCACGTGTGCTCCCCCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000522154.1
ENST00000609660.1
CDS GCA 72 bp CAGGCGGGGGAGCACACGTGCAGAGCAGTACTGAAATaGTGCAATATACGTGAAGTAAGCCACCAGCCTTTG +
Preference number: 6 (lower is better)
Translates to: QAGEHTCRAVLK*CNIREVSHQPL
Trigger: CAAAGGCTGGTGGCTTACTTCACGTATATTGCAGCATTTCAGTACTGCTCTGCACGTGTGCTCCCCCGCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000522154.1
ENST00000609660.1
CDS GCA 72 bp TCAGGTAGTTCTCCAGGGTTGTGGTGGCAGACCCTGTaGCAGGCAGGTCCCACAACACCACATTTGAAAAGT +
Preference number: 6 (lower is better)
Translates to: SGSSPGLWWQTL*QAGPTTPHLKS
Trigger: ACTTTTCAAATGTGGTGTTGTGGGACCTGCCTGGCACAGGGTCTGCCACCACAACCCTGGAGAACTACCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CAA 90 bp TCATGTCCTGTGTTTCGAAGGGCACTGATGAAGGTGGACATCCCATaGCCAGAGTCCCCTGCCATAGTGATGTTAACTGGTGTCCTGGAC +
Preference number: 6 (lower is better)
Translates to: SCPVFRRALMKVDIP*PESPAIVMLTGVLD
Trigger: GTCCAGGACACCAGTTAACATCACTATGGCAGGGGACTCTGGCAATGGGATGTCCACCTTCATCAGTGCCCTTCGAAACACAGGACATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS TCA 72 bp ACATCTTTGGGTAGCTTTTACCAGCTCAGTAGGAGGTaGGGCCTTACCCTCATGTCCTGTGTTTCGAAGGGC +
Preference number: 6 (lower is better)
Translates to: TSLGSFYQLSRR*GLTLMSCVSKG
Trigger: GCCCTTCGAAACACAGGACATGAGGGTAAGGCCTCACCTCCTACTGAGCTGGTAAAAGCTACCCAAAGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CCA 72 bp GCAAGAGGTACGTGGCTGTGGTTTGGGTACACTTGTTaGTTTCTAGAGCTCCGCTCCTTCTGGAGATTTTCC +
Preference number: 6 (lower is better)
Translates to: ARGTWLWFGYTC*FLELRSFWRFS
Trigger: GGAAAATCTCCAGAAGGAGCGGAGCTCTAGAAACCAACAAGTGTACCCAAACCACAGCCACGTACCTCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS CAA 72 bp GTGTTTCGAAGGGCACTGATGAAGGTGGACATCCCATaGCCAGAGTCCCCTGCCATAGTGATGTTAACTGGT +
Preference number: 6 (lower is better)
Translates to: VFRRALMKVDIP*PESPAIVMLTG
Trigger: ACCAGTTAACATCACTATGGCAGGGGACTCTGGCAATGGGATGTCCACCTTCATCAGTGCCCTTCGAAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CAA 72 bp GCAAGCAAGAGGTACGTGGCTGTGGTTTGGGTACACTaGTTGGTTTCTAGAGCTCCGCTCCTTCTGGAGATT +
Preference number: 6 (lower is better)
Translates to: ASKRYVAVVWVH*LVSRAPLLLEI
Trigger: AATCTCCAGAAGGAGCGGAGCTCTAGAAACCAACAAGTGTACCCAAACCACAGCCACGTACCTCTTGCTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS CAA 90 bp GCAGTACTGAAATGCTGCAATATACGTGAAGTAAGCCACCAGCCTTaGACCCCCGAGCTTCCATTAAGACTGTCATGTTGGGCCCAACTG +
Preference number: 6 (lower is better)
Translates to: AVLKCCNIREVSHQP*TPELPLRLSCWAQL
Trigger: CAGTTGGGCCCAACATGACAGTCTTAATGGAAGCTCGGGGGTCAAAGGCTGGTGGCTTACTTCACGTATATTGCAGCATTTCAGTACTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000522154.1
ENST00000609660.1
CDS GCA 72 bp ACTGATGAAGGTGGACATCCCATTGCCAGAGTCCCCTaGCATAGTGATGTTAACTGGTGTCCTGGACACTAT +
Preference number: 6 (lower is better)
Translates to: TDEGGHPIARVP*HSDVNWCPGHY
Trigger: ATAGTGTCCAGGACACCAGTTAACATCACTATGGCAGGGGACTCTGGCAATGGGATGTCCACCTTCATCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CCA 72 bp CCCATTGCCAGAGTCCCCTGCCATAGTGATGTTAACTaGTGTCCTGGACACTATCTTCAGAGTCTCCTTGAT +
Preference number: 6 (lower is better)
Translates to: PIARVPCHSDVN*CPGHYLQSLLD
Trigger: ATCAAGGAGACTCTGAAGATAGTGTCCAGGACACCAGTTAACATCACTATGGCAGGGGACTCTGGCAATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CAA 72 bp AGCAAGAGGTACGTGGCTGTGGTTTGGGTACACTTGTaGGTTTCTAGAGCTCCGCTCCTTCTGGAGATTTTC +
Preference number: 6 (lower is better)
Translates to: SKRYVAVVWVHL*VSRAPLLLEIF
Trigger: GAAAATCTCCAGAAGGAGCGGAGCTCTAGAAACCAACAAGTGTACCCAAACCACAGCCACGTACCTCTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520549.1
CDS TCA 72 bp CTTCCATTAAGACTGTCATGTTGGGCCCAACTGAAGTaGGGGAGAGGAGGAGACAGCATACTCAAATGCTCT +
Preference number: 6 (lower is better)
Translates to: LPLRLSCWAQLK*GRGGDSILKCS
Trigger: AGAGCATTTGAGTATGCTGTCTCCTCCTCTCCCTCACTTCAGTTGGGCCCAACATGACAGTCTTAATGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000522154.1
ENST00000609660.1
CDS CAA 72 bp ACAATTGCTTATCATTGCATTCGCCAAACCTGGCTCTaGCAGGTTCCACAAGGGGCCAGGTATTTGAGACTG +
Preference number: 6 (lower is better)
Translates to: TIAYHCIRQTWL*QVPQGARYLRL
Trigger: CAGTCTCAAATACCTGGCCCCTTGTGGAACCTGCAAGAGCCAGGTTTGGCGAATGCAATGATAAGCAATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000522154.1
ENST00000609660.1
CDS CAA 90 bp ATAGTGATGTTAACTGGTGTCCTGGACACTATCTTCAGAGTCTCCTaGATGTTAGAGATCACCTCTGGCAAGTTCCCATCTGCTGAGGCT +
Preference number: 6 (lower is better)
Translates to: IVMLTGVLDTIFRVS*MLEITSGKFPSAEA
Trigger: AGCCTCAGCAGATGGGAACTTGCCAGAGGTGATCTCTAACATCAAGGAGACTCTGAAGATAGTGTCCAGGACACCAGTTAACATCACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CCA 72 bp GAAGGTGATGTGATTTCCTACTCCTACCGGAATTGGTaGGTTCTTCGTCTCACTGACTTCAAGAATGAAGCC +
Preference number: 6 (lower is better)
Translates to: EGDVISYSYRNW*VLRLTDFKNEA
Trigger: GGCTTCATTCTTGAAGTCAGTGAGACGAAGAACCCACCAATTCCGGTAGGAGTAGGAAATCACATCACCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000522154.1
ENST00000609660.1
CDS CAA 72 bp AAATGCTGCAATATACGTGAAGTAAGCCACCAGCCTTaGACCCCCGAGCTTCCATTAAGACTGTCATGTTGG +
Preference number: 6 (lower is better)
Translates to: KCCNIREVSHQP*TPELPLRLSCW
Trigger: CCAACATGACAGTCTTAATGGAAGCTCGGGGGTCAAAGGCTGGTGGCTTACTTCACGTATATTGCAGCATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000522154.1
ENST00000609660.1
CDS CAA 90 bp CATGTCCTCAGCGGTTTTGGCAAGCATCACATGATTCATGCTGAATaGTGCAGATGCAACCATGATGAAGTCATACCGGTTGAACTGCAT +
Preference number: 6 (lower is better)
Translates to: HVLSGFGKHHMIHAE*CRCNHDEVIPVELH
Trigger: ATGCAGTTCAACCGGTATGACTTCATCATGGTTGCATCTGCACAATTCAGCATGAATCATGTGATGCTTGCCAAAACCGCTGAGGACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS TCA 72 bp ATTCTTAAAGGCTGCGTGTCCGGAGTTTGTTCCTTCTaGTGTTTGGATGTGTTCAGAGTTTCTTCCTTCCGG +
Preference number: 6 (lower is better)
Translates to: ILKGCVSGVCSF*CLDVFRVSSFR
Trigger: CCGGAAGGAAGAAACTCTGAACACATCCAAACATCAGAAGGAACAAACTCCGGACACGCAGCCTTTAAGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS TCA 72 bp GATGTTAGAGATCACCTCTGGCAAGTTCCCATCTGCTaGGGCTTTCTCAACATTCATGGCTTCCATCTTCAA +
Preference number: 6 (lower is better)
Translates to: DVRDHLWQVPIC*GFLNIHGFHLQ
Trigger: TTGAAGATGGAAGCCATGAATGTTGAGAAAGCCTCAGCAGATGGGAACTTGCCAGAGGTGATCTCTAACATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CCA 72 bp GCAAGTTCCCATCTGCTGAGGCTTTCTCAACATTCATaGCTTCCATCTTCAATAAAATACCCCAATGCTGGC +
Preference number: 6 (lower is better)
Translates to: ASSHLLRLSQHS*LPSSIKYPNAG
Trigger: GCCAGCATTGGGGTATTTTATTGAAGATGGAAGCCATGAATGTTGAGAAAGCCTCAGCAGATGGGAACTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CAA 72 bp TTAACTGGTGTCCTGGACACTATCTTCAGAGTCTCCTaGATGTTAGAGATCACCTCTGGCAAGTTCCCATCT +
Preference number: 6 (lower is better)
Translates to: LTGVLDTIFRVS*MLEITSGKFPS
Trigger: AGATGGGAACTTGCCAGAGGTGATCTCTAACATCAAGGAGACTCTGAAGATAGTGTCCAGGACACCAGTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CAA 72 bp AGCGGTTTTGGCAAGCATCACATGATTCATGCTGAATaGTGCAGATGCAACCATGATGAAGTCATACCGGTT +
Preference number: 6 (lower is better)
Translates to: SGFGKHHMIHAE*CRCNHDEVIPV
Trigger: AACCGGTATGACTTCATCATGGTTGCATCTGCACAATTCAGCATGAATCATGTGATGCTTGCCAAAACCGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS GCA 72 bp GGTTTTGGCAAGCATCACATGATTCATGCTGAATTGTaGAGATGCAACCATGATGAAGTCATACCGGTTGAA +
Preference number: 6 (lower is better)
Translates to: GFGKHHMIHAEL*RCNHDEVIPVE
Trigger: TTCAACCGGTATGACTTCATCATGGTTGCATCTGCACAATTCAGCATGAATCATGTGATGCTTGCCAAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522154.1
CDS CCA 72 bp AAAGAAGGTGATGTGATTTCCTACTCCTACCGGAATTaGTGGGTTCTTCGTCTCACTGACTTCAAGAATGAA +
Preference number: 6 (lower is better)
Translates to: KEGDVISYSYRN*WVLRLTDFKNE
Trigger: TTCATTCTTGAAGTCAGTGAGACGAAGAACCCACCAATTCCGGTAGGAGTAGGAAATCACATCACCTTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000522154.1
ENST00000609660.1