RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for INCA1 (Homo sapiens)

Ensembl gene IDs: ENSG00000196388

Ensembl transcript IDs: ENST00000355025.7, ENST00000574617.1, ENST00000575780.5, ENST00000576820.5

Found 231 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTTaGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGG +
Preference number: 1 (lower is better)
Translates to: PRGLLMPSSEDGKGS*RDEGRGNAFMSAMR
Trigger: CCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
3UTR CAA 90 bp GCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTaGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGGTTTCT +
Preference number: 2 (lower is better)
Translates to: AFMSAMRVTLVTELV*GPWGTTSLSASVVS
Trigger: AGAAACCACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
3UTR-3UTR CCA 90 bp GAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCACTAGTCTTGGGTCCCTaGGGCACCACTAGCCTCTCG +
Preference number: 2 (lower is better)
Translates to: EDGKGSWRDEGRGNAFMSLVLGP*GTTSLS
Trigger: CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAG...TGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
3UTR-3UTR CCA 90 bp GCTTGCTTTTTAATAACAGAGCAGAGAGAATACAAGGCCAGGAGCGGGGCCTGGAGCGGTGGGTTGAGATaGGAGCCCACGGGGGCTGTT +
Preference number: 2 (lower is better)
Translates to: ACFLITEQREYKARSGAWSGGLR*EPTGAV
Trigger: AACAGCCCCCGTGGGCTCCCATCTCAACCCACCGCT...CCAGGCCCCGCTCCTGGCCTTGTATTCTCTCTGCTCTGTTATTAAAAAGCAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
3UTR-3UTR CCA 90 bp TGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTACTAGTCTTGGGTCCCTaGGGCACCACTAGCCTCTCG +
Preference number: 2 (lower is better)
Translates to: WRDEGRGNAFMSAMRVTLLVLGP*GTTSLS
Trigger: CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAG...TAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
3UTR TCA 72 bp AACAGGACTTGGGGTGCTCCTGTGAGAGCGGTGGGTTaGGATGGGAGCCCACGGGGGCTGTTAATGCCTAGT +
Preference number: 3 (lower is better)
Translates to: NRTWGAPVRAVG*DGSPRGLLMPS
Trigger: ACTAGGCATTAACAGCCCCCGTGGGCTCCCATCTCAACCCACCGCTCTCACAGGAGCACCCCAAGTCCTGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
3UTR CCA 72 bp AGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTaGGGCACCACTAGCCTCTCGGCATCGGTGGTTTCT +
Preference number: 3 (lower is better)
Translates to: RVTLVTELVLGP*GTTSLSASVVS
Trigger: AGAAACCACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
3UTR-3UTR CAA 90 bp AAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACGGAACTAGTCTaGGGTCCCTGGGGCACCACT +
Preference number: 3 (lower is better)
Translates to: KGSWRDEGRGNAFMSAMRVTELV*GPWGTT
Trigger: AGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC...CCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GATGGGAGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTGGGTCCGGCTGGGGCTaGGGGGCTGAAGCAGCTGCG +
Preference number: 4 (lower is better)
Translates to: DGSPRGLLMPSSEDGKGSGSGWG*GAEAAA
Trigger: CGCAGCTGCTTCAGCCCCTCAGCCCCAGCCGGACCC...ACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCTCCCATC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR TCA 90 bp AAACAGGACTTGGGGTGCTCCTGTGAGAGCGGTGGGTTGAGATGGGAGCCCACGCCTCCAGGTGGTAAGTaGCAGCCCTCACCCGGGCGG +
Preference number: 4 (lower is better)
Translates to: KQDLGCSCESGGLRWEPTPPGGK*QPSPGR
Trigger: CCGCCCGGGTGAGGGCTGTCACTTACCACCTGGAGG...CGTGGGCTCCCATCTCAACCCACCGCTCTCACAGGAGCACCCCAAGTCCTGTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR TCA 90 bp ACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCAGTGAGAGCGGTGGGTTaGGATGGGAGCCCACGGGGG +
Preference number: 4 (lower is better)
Translates to: TLVTELVLGPWGTTSLSAVRAVG*DGSPRG
Trigger: CCCCCGTGGGCTCCCATCTCAACCCACCGCTCTCAC...TGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGGCCAGAGAGTGCAGCTaGCTGGAGGCACAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVARECS*LEAQAS
Trigger: GGAGGCTTGTGCCTCCAGGCAGCTGCACTCTCTGGC...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGAGCGGTGGGTTGAGATaGGAGCCCACGGGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVSGGLR*EPTGAV
Trigger: AACAGCCCCCGTGGGCTCCCATCTCAACCCACCGCT...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCTGGGGCATGGGTCTaGGGCTCTGGGAAGGCAACC +
Preference number: 4 (lower is better)
Translates to: VTLVTELVLGPWGTTSLSAGAWV*GSGKAT
Trigger: GGTTGCCTTCCCAGAGCCTCAGACCCATGCCCCAGC...CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCGCACAAGCCTCCTCCTaGTCCAGGGGGCTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: RVTLVTELVLGPWGTTSLAQASS*SRGLQG
Trigger: TCCCTGGAGCCCCCTGGATCAGGAGGAGGCTTGTGC...GAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGCTGGGAAGGCAACCTTaGGGGTGGAGATCGGCTGAC +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVLGRQP*GWRSAD
Trigger: GTCAGCCGATCTCCACCCCCAAGGTTGCCTTCCCAG...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGGAGAGTGCAGCTGCCTaGAGGCACAAGCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVESAAA*RHKPPP
Trigger: AGGAGGAGGCTTGTGCCTCCAGGCAGCTGCACTCTC...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp TTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTGGGTCCGGCTGGGGCTaGGGGGCTGAAGCAGCTGCG +
Preference number: 4 (lower is better)
Translates to: LERRRKGKRLHVSNEGDSGSGWG*GAEAAA
Trigger: CGCAGCTGCTTCAGCCCCTCAGCCCCAGCCGGACCC...AGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR TCA 90 bp TCAGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGGCCTGCGAGGGTGGATaGGGACCCGAGGGTCCGGCT +
Preference number: 4 (lower is better)
Translates to: SEDGKGSWRDEGRGNAFMACEGG*GPEGPA
Trigger: AGCCGGACCCTCGGGTCCTCATCCACCCTCGCAGGC...CATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR TCA 90 bp CGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAGCCTGCGAGGGTGGATaGGGACCCGAGGGTCCGGCT +
Preference number: 4 (lower is better)
Translates to: RRKGKRLHVSNEGDSSDGACEGG*GPEGPA
Trigger: AGCCGGACCCTCGGGTCCTCATCCACCCTCGCAGGC...TCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR TCA 90 bp ATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCCCTCCAGGTGGTAAGTaGCAGCCCTCACCCGGGCGG +
Preference number: 4 (lower is better)
Translates to: MSAMRVTLVTELVLGPWGPPGGK*QPSPGR
Trigger: CCGCCCGGGTGAGGGCTGTCACTTACCACCTGGAGG...GCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTTGGAGAGTGAGAGCGGTGGGTTaGGATGGGAGCCCACGGGGG +
Preference number: 4 (lower is better)
Translates to: SPRGLLMPSSEDGKGSWRVRAVG*DGSPRG
Trigger: CCCCCGTGGGCTCCCATCTCAACCCACCGCTCTCAC...TCTCCAACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCCAGAGAGTGCAGCTaGCTGGAGGCACAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: VTLVTELVLGPWGTTSLSARECS*LEAQAS
Trigger: GGAGGCTTGTGCCTCCAGGCAGCTGCACTCTCTGGC...CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp ATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCCTGCGCCTGCGAGGGTaGATGAGGACCCGAGGGTCC +
Preference number: 4 (lower is better)
Translates to: MSAMRVTLVTELVLGPWGLRLRG*MRTRGS
Trigger: GGACCCTCGGGTCCTCATCCACCCTCGCAGGCGCAG...GCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGTTCGCCAAGCACCACTaGCTCAGATGCAGCCCCAGA +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVFAKHH*LRCSPR
Trigger: TCTGGGGCTGCATCTGAGCCAGTGGTGCTTGGCGAA...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGAGGATCCTCCACAGTTaGCTTCGGGGTAGCCACGGC +
Preference number: 4 (lower is better)
Translates to: VTLVTELVLGPWGTTSLSRILHS*LRGSHG
Trigger: GCCGTGGCTACCCCGAAGTCAACTGTGGAGGATCCT...CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR TCA 90 bp AGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACGGGGTGGAGATCGGCTaGCCACCCTGGAACACTTGG +
Preference number: 4 (lower is better)
Translates to: SNEGDSSDGTSLGSLGHHGVEIG*PPWNTW
Trigger: CCAAGTGTTCCAGGGTGGTCAGCCGATCTCCACCCC...GTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GATGGGAGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTGGGGTGGAGATCGGCTaGCCACCCTGGAACACTTGG +
Preference number: 4 (lower is better)
Translates to: DGSPRGLLMPSSEDGKGSGVEIG*PPWNTW
Trigger: CCAAGTGTTCCAGGGTGGTCAGCCGATCTCCACCCC...ACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCTCCCATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCACCTCCAGGTGGTAAGTaGCAGCCCTCACCCGGGCGG +
Preference number: 4 (lower is better)
Translates to: EDGKGSWRDEGRGNAFMSPPGGK*QPSPGR
Trigger: CCGCCCGGGTGAGGGCTGTCACTTACCACCTGGAGG...TGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCGGGCCCTGCCAGGAGTaGGAAAACGGTCCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: RVTLVTELVLGPWGTTSLGPCQE*ENGPLP
Trigger: AGGAAGAGGACCGTTTTCTCACTCCTGGCAGGGCCC...GAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp ATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCGCACAAGCCTCCTCCTaGTCCAGGGGGCTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: MSAMRVTLVTELVLGPWGAQASS*SRGLQG
Trigger: TCCCTGGAGCCCCCTGGATCAGGAGGAGGCTTGTGC...GCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp TTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTGGGAGCAGCGGGAGCTaGGGGGCATTCGGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: LERRRKGKRLHVSNEGDSGSSGS*GAFGPQ
Trigger: CTGAGGCCCGAATGCCCCGCAGCTCCCGCTGCTCCC...AGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000574617.1
CDS-3UTR GCA 90 bp TGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGGGAGCAGCGGGAGCTaGGGGGCATTCGGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: WRDEGRGNAFMSAMRVTLGSSGS*GAFGPQ
Trigger: CTGAGGCCCGAATGCCCCGCAGCTCCCGCTGCTCCC...TAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000574617.1
CDS-3UTR GCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGCCCCCAAGGCCCTGCTaGTGCATTCCTTCCAAACAT +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVPPRPC*CIPSKH
Trigger: ATGTTTGGAAGGAATGCAGCAGCAGGGCCTTGGGGG...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGACTCCCCCAAGGCCCTaGTGCTGCATTCCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVTPPRP*CCIPSK
Trigger: TTTGGAAGGAATGCAGCAGCAGGGCCTTGGGGGAGT...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp ACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCAATGCAGCCCCAGAGCTaGCCCACTGGGCCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: TLVTELVLGPWGTTSLSAMQPQS*PTGPSS
Trigger: TGAAGAAGGCCCAGTGGGGCAGCTCTGGGGCTGCAT...TGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp CGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGACTGCGCCTGCGAGGGTaGATGAGGACCCGAGGGTCC +
Preference number: 4 (lower is better)
Translates to: RRKGKRLHVSNEGDSSDGLRLRG*MRTRGS
Trigger: GGACCCTCGGGTCCTCATCCACCCTCGCAGGCGCAG...TCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CCA 90 bp ACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCAGGAGACCAAAGCAGCTaGGCCCTGCCAGGAGTGAGA +
Preference number: 4 (lower is better)
Translates to: TLVTELVLGPWGTTSLSAGDQSS*ALPGVR
Trigger: TCTCACTCCTGGCAGGGCCCAGCTGCTTTGGTCTCC...TGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCGGAGACCAAAGCAGCTaGGCCCTGCCAGGAGTGAGA +
Preference number: 4 (lower is better)
Translates to: RVTLVTELVLGPWGTTSLGDQSS*ALPGVR
Trigger: TCTCACTCCTGGCAGGGCCCAGCTGCTTTGGTCTCC...GAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGGTGGGGGTGGGCCTTTaGTTAAGGTTCTTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVVGVGL*LRFFQK
Trigger: CTTCTGGAAGAACCTTAATCAAAGGCCCACCCCCAC...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGCCTCCAGGTGGTAAGTaGCAGCCCTCACCCGGGCGG +
Preference number: 4 (lower is better)
Translates to: KGSWRDEGRGNAFMSAMRPPGGK*QPSPGR
Trigger: CCGCCCGGGTGAGGGCTGTCACTTACCACCTGGAGG...CCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GATGGGAGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTGGGCCCTGCCAGGAGTaGGAAAACGGTCCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: DGSPRGLLMPSSEDGKGSGPCQE*ENGPLP
Trigger: AGGAAGAGGACCGTTTTCTCACTCCTGGCAGGGCCC...ACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCTCCCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGATCCCCCAGGGATTGTaGAGGGGGTTCCTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: VTLVTELVLGPWGTTSLSIPQGL*RGFLLA
Trigger: AGCCAGAAGGAACCCCCTTCACAATCCCTGGGGGAT...CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGTGAGAGCGGTGGGTTaGGATGGGAGCCCACGGGGG +
Preference number: 4 (lower is better)
Translates to: RRRKGKRLHVSNEGDSSDVRAVG*DGSPRG
Trigger: CCCCCGTGGGCTCCCATCTCAACCCACCGCTCTCAC...GTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp ACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCAATGGGTGGAATGTGCTaGTCCTCCAGCCAAGTGGGG +
Preference number: 4 (lower is better)
Translates to: TLVTELVLGPWGTTSLSAMGGMC*SSSQVG
Trigger: CCCCACTTGGCTGGAGGAGCAGCACATTCCACCCAT...TGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AAACAGGACTTGGGGTGCTCCTGTGAGAGCGGTGGGTTGAGATGGGAGCCCACGACTCCCCCAAGGCCCTaGTGCTGCATTCCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: KQDLGCSCESGGLRWEPTTPPRP*CCIPSK
Trigger: TTTGGAAGGAATGCAGCAGCAGGGCCTTGGGGGAGT...CGTGGGCTCCCATCTCAACCCACCGCTCTCACAGGAGCACCCCAAGTCCTGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR GCA 90 bp ATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCATGCAGCCCCAGAGCTaGCCCACTGGGCCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: MRVTLVTELVLGPWGTTSMQPQS*PTGPSS
Trigger: TGAAGAAGGCCCAGTGGGGCAGCTCTGGGGCTGCAT...GCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTTGGAGAGCCAGAGAGTGCAGCTaGCTGGAGGCACAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: SPRGLLMPSSEDGKGSWRARECS*LEAQAS
Trigger: GGAGGCTTGTGCCTCCAGGCAGCTGCACTCTCTGGC...TCTCCAACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp ACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCAAACGAGGCCAGAGAGTaGAGCTGCCTGGAGGCACAA +
Preference number: 4 (lower is better)
Translates to: TLVTELVLGPWGTTSLSANEARE*SCLEAQ
Trigger: TTGTGCCTCCAGGCAGCTGCACTCTCTGGCCTCGTT...TGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCAGGGGGTGGGAGCTaGTCAGGAGGATACAGACCA +
Preference number: 4 (lower is better)
Translates to: RVTLVTELVLGPWGTTSLSGGGS*SGGYRP
Trigger: TGGTCTGTATCCTCCTGAGCAGCTCCCACCCCCTGA...GAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR CCA 90 bp ATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTGGGAAGGCAACCTTaGGGGTGGAGATCGGCTGAC +
Preference number: 4 (lower is better)
Translates to: MRVTLVTELVLGPWGTTSLGRQP*GWRSAD
Trigger: GTCAGCCGATCTCCACCCCCAAGGTTGCCTTCCCAG...GCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGATGGGTCTGAGGCTCTaGGAAGGCAACCTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: VTLVTELVLGPWGTTSLSMGLRL*EGNLGG
Trigger: ACCCCCAAGGTTGCCTTCCCAGAGCCTCAGACCCAT...CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGAAGCATTTCAGGGGGTaGGAGCAGCATGGGTGGAAT +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVKHFRG*EQHGWN
Trigger: ATTCCACCCATGCTGCTCCCACCCCCTGAAATGCTT...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CCA 90 bp AGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCCCAGAGCTGCCCCACTaGGCCTTCTTCAGTTCGTTG +
Preference number: 4 (lower is better)
Translates to: RVTLVTELVLGPWGTTSLPELPH*AFFSSL
Trigger: CAACGAACTGAAGAAGGCCCAGTGGGGCAGCTCTGG...GAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp ACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATTCGCCAAGCACCACTaGCTCAGATGCAGCCCCAGA +
Preference number: 4 (lower is better)
Translates to: TLVTELVLGPWGTTSLSAFAKHH*LRCSPR
Trigger: TCTGGGGCTGCATCTGAGCCAGTGGTGCTTGGCGAA...TGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp ATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCGGAGACCAAAGCAGCTaGGCCCTGCCAGGAGTGAGA +
Preference number: 4 (lower is better)
Translates to: MRVTLVTELVLGPWGTTSGDQSS*ALPGVR
Trigger: TCTCACTCCTGGCAGGGCCCAGCTGCTTTGGTCTCC...GCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACGGAGACCAAAGCAGCTaGGCCCTGCCAGGAGTGAGA +
Preference number: 4 (lower is better)
Translates to: SNEGDSSDGTSLGSLGHHGDQSS*ALPGVR
Trigger: TCTCACTCCTGGCAGGGCCCAGCTGCTTTGGTCTCC...GTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp ATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCTTGGGTCCAAGCGGGTaGCCTAGATCCAAGGGCAGG +
Preference number: 4 (lower is better)
Translates to: MSAMRVTLVTELVLGPWGLGPSG*PRSKGR
Trigger: CCTGCCCTTGGATCTAGGTCACCCGCTTGGACCCAA...GCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000574617.1
CDS-3UTR TCA 90 bp GCTTGCTTTTTAATAACAGAGCAGAGAGAATACAAGGCCAGGAGCGGGGCCTGGGCTGGGGCATGGGTCTaGGGCTCTGGGAAGGCAACC +
Preference number: 4 (lower is better)
Translates to: ACFLITEQREYKARSGAWAGAWV*GSGKAT
Trigger: GGTTGCCTTCCCAGAGCCTCAGACCCATGCCCCAGC...CCAGGCCCCGCTCCTGGCCTTGTATTCTCTCTGCTCTGTTATTAAAAAGCAAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR TCA 90 bp GGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGCTGGGGCATGGGTCTaGGGCTCTGGGAAGGCAACC +
Preference number: 4 (lower is better)
Translates to: GRGNAFMSAMRVTLVTELAGAWV*GSGKAT
Trigger: GGTTGCCTTCCCAGAGCCTCAGACCCATGCCCCAGC...TAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp TGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGCACAAGCCTCCTCCTaGTCCAGGGGGCTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: WRDEGRGNAFMSAMRVTLAQASS*SRGLQG
Trigger: TCCCTGGAGCCCCCTGGATCAGGAGGAGGCTTGTGC...TAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGCACAAGCCTCCTCCTaGTCCAGGGGGCTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: ERQLERRRKGKRLHVSNEAQASS*SRGLQG
Trigger: TCCCTGGAGCCCCCTGGATCAGGAGGAGGCTTGTGC...CTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTGTGAGAGCGGTGGGTTaGGATGGGAGCCCACGGGGG +
Preference number: 4 (lower is better)
Translates to: KGKRLHVSNEGDSSDGTSVRAVG*DGSPRG
Trigger: CCCCCGTGGGCTCCCATCTCAACCCACCGCTCTCAC...ACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTTGGAGACTTGGGGTGCTCCTGTaGGAGCGGTGGGTTGAGATG +
Preference number: 4 (lower is better)
Translates to: SPRGLLMPSSEDGKGSWRLGVLL*ERWVEM
Trigger: CATCTCAACCCACCGCTCTCACAGGAGCACCCCAAG...TCTCCAACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR GCA 90 bp GATGGGAGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTATGGGTGGAATGTGCTaGTCCTCCAGCCAAGTGGGG +
Preference number: 4 (lower is better)
Translates to: DGSPRGLLMPSSEDGKGSMGGMC*SSSQVG
Trigger: CCCCACTTGGCTGGAGGAGCAGCACATTCCACCCAT...ACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCTCCCATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGCACCACTGGCTCAGATaGAGCCCCAGAGCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: GKGSWRDEGRGNAFMSAMHHWLR*SPRAAP
Trigger: TGGGGCAGCTCTGGGGCTGCATCTGAGCCAGTGGTG...CATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp ATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCAACGAGGCCAGAGAGTaGAGCTGCCTGGAGGCACAA +
Preference number: 4 (lower is better)
Translates to: MRVTLVTELVLGPWGTTSNEARE*SCLEAQ
Trigger: TTGTGCCTCCAGGCAGCTGCACTCTCTGGCCTCGTT...GCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GATGGGAGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTCGGGCCTCAGATAGTTaGGTCCAAGCGGGTGACCTA +
Preference number: 4 (lower is better)
Translates to: DGSPRGLLMPSSEDGKGSRASDS*VQAGDL
Trigger: TAGGTCACCCGCTTGGACCCAACTATCTGAGGCCCG...ACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCTCCCATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000574617.1
CDS-3UTR CCA 90 bp GATGGGAGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTCCAGAGCTGCCCCACTaGGCCTTCTTCAGTTCGTTG +
Preference number: 4 (lower is better)
Translates to: DGSPRGLLMPSSEDGKGSPELPH*AFFSSL
Trigger: CAACGAACTGAAGAAGGCCCAGTGGGGCAGCTCTGG...ACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCTCCCATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGGGTATTCATTGGTGCTaGGGAATCCACAGCCCTCTT +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVGIHWC*GIHSPL
Trigger: AAGAGGGCTGTGGATTCCCCAGCACCAATGAATACC...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCGGTGGATCAGGGTATTCATTaGTGCTGGGGAATCCACAGC +
Preference number: 4 (lower is better)
Translates to: VTELVLGPWGTTSLSASVDQGIH*CWGIHS
Trigger: GCTGTGGATTCCCCAGCACCAATGAATACCCTGATC...CACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp ATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCGAGAGTGCAGCTGCCTaGAGGCACAAGCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: MSAMRVTLVTELVLGPWGESAAA*RHKPPP
Trigger: AGGAGGAGGCTTGTGCCTCCAGGCAGCTGCACTCTC...GCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
3UTR CAA 72 bp TCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTaGGGTCCCTGGGGCACCACTAGCCTCTCGGCATCG +
Preference number: 4 (lower is better)
Translates to: SAMRVTLVTELV*GPWGTTSLSAS
Trigger: CGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp CGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCTTGGGTCCAAGCGGGTaGCCTAGATCCAAGGGCAGG +
Preference number: 4 (lower is better)
Translates to: RLHVSNEGDSSDGTSLGSLGPSG*PRSKGR
Trigger: CCTGCCCTTGGATCTAGGTCACCCGCTTGGACCCAA...GGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000574617.1
CDS-3UTR TCA 90 bp AGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGGGGGTGGAGATCGGCTaGCCACCCTGGAACACTTGG +
Preference number: 4 (lower is better)
Translates to: RDEGRGNAFMSAMRVTLVGVEIG*PPWNTW
Trigger: CCAAGTGTTCCAGGGTGGTCAGCCGATCTCCACCCC...CACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTGCTGGGGCATGGGTCTaGGGCTCTGGGAAGGCAACC +
Preference number: 4 (lower is better)
Translates to: KGKRLHVSNEGDSSDGTSAGAWV*GSGKAT
Trigger: GGTTGCCTTCCCAGAGCCTCAGACCCATGCCCCAGC...ACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGTGGGGGTGGGCCTTTaGTTAAGGTTCTTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: VTLVTELVLGPWGTTSLSVGVGL*LRFFQK
Trigger: CTTCTGGAAGAACCTTAATCAAAGGCCCACCCCCAC...CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCCTTGGGGTGCTCCTGTaGGAGCGGTGGGTTGAGATG +
Preference number: 4 (lower is better)
Translates to: RGWERQLERRRKGKRLHVLGVLL*ERWVEM
Trigger: CATCTCAACCCACCGCTCTCACAGGAGCACCCCAAG...GACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR GCA 90 bp GAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCACCATCATCCTGCACCTaGATGACTGGACGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: EDGKGSWRDEGRGNAFMSPSSCT*MTGRGW
Trigger: CCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGG...TGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp CGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGACCATCATCCTGCACCTaGATGACTGGACGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: RRKGKRLHVSNEGDSSDGPSSCT*MTGRGW
Trigger: CCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGG...TCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTTGACTCCATCATCCTaGACCTGCATGACTGGACGG +
Preference number: 4 (lower is better)
Translates to: RVTLVTELVLGPWGTTSLLTPSS*TCMTGR
Trigger: CCGTCCAGTCATGCAGGTGCAGGATGATGGAGTCAA...GAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp CGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAATGCAGCCCCAGAGCTaGCCCACTGGGCCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: RRKGKRLHVSNEGDSSDGMQPQS*PTGPSS
Trigger: TGAAGAAGGCCCAGTGGGGCAGCTCTGGGGCTGCAT...TCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGCACCACTGGCTCAGATaGAGCCCCAGAGCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: RDEGRGNAFMSAMRVTLVHHWLR*SPRAAP
Trigger: TGGGGCAGCTCTGGGGCTGCATCTGAGCCAGTGGTG...CACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTACACCACTGGCTCAGATaGAGCCCCAGAGCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: GRGNAFMSAMRVTLVTELHHWLR*SPRAAP
Trigger: TGGGGCAGCTCTGGGGCTGCATCTGAGCCAGTGGTG...TAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp ACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCACAGGGTATTCATTGGTaGTGGGGAATCCACAGCCCT +
Preference number: 4 (lower is better)
Translates to: TLVTELVLGPWGTTSLSAQGIHW*WGIHSP
Trigger: AGGGCTGTGGATTCCCCAGCACCAATGAATACCCTG...TGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGCCAGAGAGTGCAGCTaGCTGGAGGCACAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: GRGNAFMSAMRVTLVTELARECS*LEAQAS
Trigger: GGAGGCTTGTGCCTCCAGGCAGCTGCACTCTCTGGC...TAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTTGGAGAATGGGTCTGAGGCTCTaGGAAGGCAACCTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: SPRGLLMPSSEDGKGSWRMGLRL*EGNLGG
Trigger: ACCCCCAAGGTTGCCTTCCCAGAGCCTCAGACCCAT...TCTCCAACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGACGGTCCTCTTCCTGTaGATAGGTTGCTCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: VTLVTELVLGPWGTTSLSTVLFL*IGCSLL
Trigger: GAGGAGAGAGCAACCTATCCACAGGAAGAGGACCGT...CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp CGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAGAGAGTGCAGCTGCCTaGAGGCACAAGCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: RRKGKRLHVSNEGDSSDGESAAA*RHKPPP
Trigger: AGGAGGAGGCTTGTGCCTCCAGGCAGCTGCACTCTC...TCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp ACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCAGCCTCTCGGCATCGGTaGTTTCTCCTTACTCTTCAG +
Preference number: 4 (lower is better)
Translates to: TLVTELVLGPWGTTSLSAASRHR*FLLTLQ
Trigger: CTGAAGAGTAAGGAGAAACCACCGATGCCGAGAGGC...TGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCCTAGTCTTGGGTCCCTaGGGCACCACTAGCCTCTCG +
Preference number: 4 (lower is better)
Translates to: RGWERQLERRRKGKRLHVLVLGP*GTTSLS
Trigger: CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAG...GACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAAGCGGTGGGTTGAGATaGGAGCCCACGGGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: GRGNAFMSAMRVTLVTELSGGLR*EPTGAV
Trigger: AACAGCCCCCGTGGGCTCCCATCTCAACCCACCGCT...TAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp TGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAAGCGGTGGGTTGAGATaGGAGCCCACGGGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: WRDEGRGNAFMSAMRVTLSGGLR*EPTGAV
Trigger: AACAGCCCCCGTGGGCTCCCATCTCAACCCACCGCT...TAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp ATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCGAGGAAAACAGGACTTaGGGTGCTCCTGTGAGAGCG +
Preference number: 4 (lower is better)
Translates to: MRVTLVTELVLGPWGTTSEENRT*GAPVRA
Trigger: CGCTCTCACAGGAGCACCCCAAGTCCTGTTTTCCTC...GCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CCA 90 bp AGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTTGGAGAGCTGGGAGCAACCAGTaGCTCTCAGCATGGGTGGAA +
Preference number: 4 (lower is better)
Translates to: SPRGLLMPSSEDGKGSWRAGSNQ*LSAWVE
Trigger: TTCCACCCATGCTGAGAGCCACTGGTTGCTCCCAGC...TCTCCAACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR TCA 90 bp AGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGGCCCTGCCAGGAGTaGGAAAACGGTCCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: RRRKGKRLHVSNEGDSSDGPCQE*ENGPLP
Trigger: AGGAAGAGGACCGTTTTCTCACTCCTGGCAGGGCCC...GTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp GAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAATCCCCCAGGGATTGTaGAGGGGGTTCCTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: EDGKGSWRDEGRGNAFMSIPQGL*RGFLLA
Trigger: AGCCAGAAGGAACCCCCTTCACAATCCCTGGGGGAT...TGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCATCCCCCAGGGATTGTaGAGGGGGTTCCTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: RGWERQLERRRKGKRLHVIPQGL*RGFLLA
Trigger: AGCCAGAAGGAACCCCCTTCACAATCCCTGGGGGAT...GACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGCCATCATCCTGCACCTaGATGACTGGACGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: RDEGRGNAFMSAMRVTLVPSSCT*MTGRGW
Trigger: CCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGG...CACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGATGCAGCCCCAGAGCTaGCCCACTGGGCCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: ERQLERRRKGKRLHVSNEMQPQS*PTGPSS
Trigger: TGAAGAAGGCCCAGTGGGGCAGCTCTGGGGCTGCAT...CTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCACCACTGGCTCAGATaGAGCCCCAGAGCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: KGKRLHVSNEGDSSDGTSHHWLR*SPRAAP
Trigger: TGGGGCAGCTCTGGGGCTGCATCTGAGCCAGTGGTG...ACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GATGGGAGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTCAGGGTATTCATTGGTaGTGGGGAATCCACAGCCCT +
Preference number: 4 (lower is better)
Translates to: DGSPRGLLMPSSEDGKGSQGIHW*WGIHSP
Trigger: AGGGCTGTGGATTCCCCAGCACCAATGAATACCCTG...ACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCTCCCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp TCAGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGAACGAGGCCAGAGAGTaGAGCTGCCTGGAGGCACAA +
Preference number: 4 (lower is better)
Translates to: SEDGKGSWRDEGRGNAFMNEARE*SCLEAQ
Trigger: TTGTGCCTCCAGGCAGCTGCACTCTCTGGCCTCGTT...CATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGCAGGGAGGCAGAGGTTaGGGTGAGTTGAGATCGCGC +
Preference number: 4 (lower is better)
Translates to: ERQLERRRKGKRLHVSNEQGGRG*GELRSR
Trigger: GCGCGATCTCAACTCACCGCAACCTCTGCCTCCCTG...CTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000574617.1
CDS-3UTR GCA 90 bp AGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCTCAGGGGGTGGGAGCTaGTCAGGAGGATACAGACCA +
Preference number: 4 (lower is better)
Translates to: RGWERQLERRRKGKRLHVSGGGS*SGGYRP
Trigger: TGGTCTGTATCCTCCTGAGCAGCTCCCACCCCCTGA...GACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR CCA 90 bp AGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGAGGCAACCTTGGGGGTaGAGATCGGCTGACCACCCT +
Preference number: 4 (lower is better)
Translates to: RDEGRGNAFMSAMRVTLVRQPWG*RSADHP
Trigger: AGGGTGGTCAGCCGATCTCCACCCCCAAGGTTGCCT...CACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACAGGCAACCTTGGGGGTaGAGATCGGCTGACCACCCT +
Preference number: 4 (lower is better)
Translates to: RRRKGKRLHVSNEGDSSDRQPWG*RSADHP
Trigger: AGGGTGGTCAGCCGATCTCCACCCCCAAGGTTGCCT...GTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp TTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGGCAACCTTGGGGGTaGAGATCGGCTGACCACCCT +
Preference number: 4 (lower is better)
Translates to: LERRRKGKRLHVSNEGDSRQPWG*RSADHP
Trigger: AGGGTGGTCAGCCGATCTCCACCCCCAAGGTTGCCT...AGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACCTGGGAAGGCAACCTTaGGGGTGGAGATCGGCTGAC +
Preference number: 4 (lower is better)
Translates to: RRRKGKRLHVSNEGDSSDLGRQP*GWRSAD
Trigger: GTCAGCCGATCTCCACCCCCAAGGTTGCCTTCCCAG...GTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCCCAGAGCTGCCCCACTaGGCCTTCTTCAGTTCGTTG +
Preference number: 4 (lower is better)
Translates to: RGWERQLERRRKGKRLHVPELPH*AFFSSL
Trigger: CAACGAACTGAAGAAGGCCCAGTGGGGCAGCTCTGG...GACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp ACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGGCAGATCAGGGTATTCATTaGTGCTGGGGAATCCACAGC +
Preference number: 4 (lower is better)
Translates to: TLVTELVLGPWGTTSLSADQGIH*CWGIHS
Trigger: GCTGTGGATTCCCCAGCACCAATGAATACCCTGATC...TGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGAGAGTGCAGCTGCCTaGAGGCACAAGCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: ERQLERRRKGKRLHVSNEESAAA*RHKPPP
Trigger: AGGAGGAGGCTTGTGCCTCCAGGCAGCTGCACTCTC...CTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGCTAGTCTTGGGTCCCTaGGGCACCACTAGCCTCTCG +
Preference number: 4 (lower is better)
Translates to: KGSWRDEGRGNAFMSAMRLVLGP*GTTSLS
Trigger: CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAG...CCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCGGCTCTCAGCATGGGTaGAATGTGCTGCTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: RGWERQLERRRKGKRLHVGSQHG*NVLLLQ
Trigger: CTGGAGGAGCAGCACATTCCACCCATGCTGAGAGCC...GACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR GCA 90 bp AGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTTGGAGATTGACTCCATCATCCTaGACCTGCATGACTGGACGG +
Preference number: 4 (lower is better)
Translates to: SPRGLLMPSSEDGKGSWRLTPSS*TCMTGR
Trigger: CCGTCCAGTCATGCAGGTGCAGGATGATGGAGTCAA...TCTCCAACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGATGGGTGGAATGTGCTaGTCCTCCAGCCAAGTGGGG +
Preference number: 4 (lower is better)
Translates to: KGSWRDEGRGNAFMSAMRMGGMC*SSSQVG
Trigger: CCCCACTTGGCTGGAGGAGCAGCACATTCCACCCAT...CCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGCCCCCAAGGCCCTGCTaGTGCATTCCTTCCAAACAT +
Preference number: 4 (lower is better)
Translates to: GKGSWRDEGRGNAFMSAMPPRPC*CIPSKH
Trigger: ATGTTTGGAAGGAATGCAGCAGCAGGGCCTTGGGGG...CATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCACTCCCCCAAGGCCCTaGTGCTGCATTCCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: RGWERQLERRRKGKRLHVTPPRP*CCIPSK
Trigger: TTTGGAAGGAATGCAGCAGCAGGGCCTTGGGGGAGT...GACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGTTACTCTTCAGACGCTaGCAACTCCATCCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: GKGSWRDEGRGNAFMSAMLLFRR*QLHPPG
Trigger: CCCTGGGGGATGGAGTTGGCAGCGTCTGAAGAGTAA...CATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp TCAGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTTACTCTTCAGACGCTaGCAACTCCATCCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: SEDGKGSWRDEGRGNAFMLLFRR*QLHPPG
Trigger: CCCTGGGGGATGGAGTTGGCAGCGTCTGAAGAGTAA...CATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGGCAGATGGGGCTAGTTaGAGTTGGGCTGAAAGGGCC +
Preference number: 4 (lower is better)
Translates to: RDEGRGNAFMSAMRVTLVADGAS*SWAERA
Trigger: GGCCCTTTCAGCCCAACTCCAACTAGCCCCATCTGC...CACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000574617.1
CDS-3UTR CCA 90 bp GGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGAGGCAACCTTGGGGGTaGAGATCGGCTGACCACCCT +
Preference number: 4 (lower is better)
Translates to: GNAFMSAMRVTLVTELVLRQPWG*RSADHP
Trigger: AGGGTGGTCAGCCGATCTCCACCCCCAAGGTTGCCT...CAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp TTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTATGGGTCTGAGGCTCTaGGAAGGCAACCTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: LERRRKGKRLHVSNEGDSMGLRL*EGNLGG
Trigger: ACCCCCAAGGTTGCCTTCCCAGAGCCTCAGACCCAT...AGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAATGGGTCTGAGGCTCTaGGAAGGCAACCTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: GRGNAFMSAMRVTLVTELMGLRL*EGNLGG
Trigger: ACCCCCAAGGTTGCCTTCCCAGAGCCTCAGACCCAT...TAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGCCAGAGCTGCCCCACTaGGCCTTCTTCAGTTCGTTG +
Preference number: 4 (lower is better)
Translates to: KGSWRDEGRGNAFMSAMRPELPH*AFFSSL
Trigger: CAACGAACTGAAGAAGGCCCAGTGGGGCAGCTCTGG...CCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTTGGAGAACGGTCCTCTTCCTGTaGATAGGTTGCTCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: SPRGLLMPSSEDGKGSWRTVLFL*IGCSLL
Trigger: GAGGAGAGAGCAACCTATCCACAGGAAGAGGACCGT...TCTCCAACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp TGCTTGCTTTTTAATAACAGAGCAGAGAGAATACAAGGCCAGGAGCGGGGCCTGCTAGTCTTGGGTCCCTaGGGCACCACTAGCCTCTCG +
Preference number: 4 (lower is better)
Translates to: CLLFNNRAERIQGQERGLLVLGP*GTTSLS
Trigger: CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAG...CAGGCCCCGCTCCTGGCCTTGTATTCTCTCTGCTCTGTTATTAAAAAGCAAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CCA 90 bp AAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTAGTCTTGGGTCCCTaGGGCACCACTAGCCTCTCG +
Preference number: 4 (lower is better)
Translates to: KGKRLHVSNEGDSSDGTSLVLGP*GTTSLS
Trigger: CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAG...ACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGCTCTCAGCATGGGTaGAATGTGCTGCTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: RRRKGKRLHVSNEGDSSDGSQHG*NVLLLQ
Trigger: CTGGAGGAGCAGCACATTCCACCCATGCTGAGAGCC...GTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR CCA 90 bp TCAGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGCAGTGGCTCTCAGCATaGGTGGAATGTGCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: SEDGKGSWRDEGRGNAFMQWLSA*VECAAP
Trigger: AGGAGCAGCACATTCCACCCATGCTGAGAGCCACTG...CATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR CCA 90 bp AGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCGCTGGGAGCAACCAGTaGCTCTCAGCATGGGTGGAA +
Preference number: 4 (lower is better)
Translates to: RGNAFMSAMRVTLVTELVAGSNQ*LSAWVE
Trigger: TTCCACCCATGCTGAGAGCCACTGGTTGCTCCCAGC...GACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR CCA 90 bp GAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGGATACAGACCAAGCTaGGAGCAACCAGTGGCTCTC +
Preference number: 4 (lower is better)
Translates to: EDGKGSWRDEGRGNAFMSGYRPS*EQPVAL
Trigger: GAGAGCCACTGGTTGCTCCCAGCTTGGTCTGTATCC...TGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR TCA 90 bp TCAGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCGTTGATGATGCTCTaGCGCCTTCTTAGGTCCTCC +
Preference number: 4 (lower is better)
Translates to: SEDGKGSWRDEGRGNAFMSLMML*RLLRSS
Trigger: GGAGGACCTAAGAAGGCGTCAGAGCATCATCAACGA...CATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTATCCCCCAGGGATTGTaGAGGGGGTTCCTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: KGKRLHVSNEGDSSDGTSIPQGL*RGFLLA
Trigger: AGCCAGAAGGAACCCCCTTCACAATCCCTGGGGGAT...ACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGATGGGTGGAATGTGCTaGTCCTCCAGCCAAGTGGGG +
Preference number: 4 (lower is better)
Translates to: GNAFMSAMRVTLVTELVLMGGMC*SSSQVG
Trigger: CCCCACTTGGCTGGAGGAGCAGCACATTCCACCCAT...CAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp TTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTCCCCCAAGGCCCTGCTaGTGCATTCCTTCCAAACAT +
Preference number: 4 (lower is better)
Translates to: LERRRKGKRLHVSNEGDSPPRPC*CIPSKH
Trigger: ATGTTTGGAAGGAATGCAGCAGCAGGGCCTTGGGGG...AGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTAACGAGGCCAGAGAGTaGAGCTGCCTGGAGGCACAA +
Preference number: 4 (lower is better)
Translates to: KGKRLHVSNEGDSSDGTSNEARE*SCLEAQ
Trigger: TTGTGCCTCCAGGCAGCTGCACTCTCTGGCCTCGTT...ACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGTTACTCTTCAGACGCTaGCAACTCCATCCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: RDEGRGNAFMSAMRVTLVLLFRR*QLHPPG
Trigger: CCCTGGGGGATGGAGTTGGCAGCGTCTGAAGAGTAA...CACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp TGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTATTACTCTTCAGACGCTaGCAACTCCATCCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: WRDEGRGNAFMSAMRVTLLLFRR*QLHPPG
Trigger: CCCTGGGGGATGGAGTTGGCAGCGTCTGAAGAGTAA...TAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGAAACAGGACTTGGGGTaGTCCTGTGAGAGCGGTGGG +
Preference number: 4 (lower is better)
Translates to: GNAFMSAMRVTLVTELVLKQDLG*SCESGG
Trigger: CCCACCGCTCTCACAGGAGCACCCCAAGTCCTGTTT...CAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR GCA 90 bp ATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCTTGAGATCGCGCCATTaGACTCCAGTCTGTGCAACA +
Preference number: 4 (lower is better)
Translates to: MSAMRVTLVTELVLGPWGLRSRH*TPVCAT
Trigger: TGTTGCACAGACTGGAGTGCAATGGCGCGATCTCAA...GCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000574617.1
CDS-3UTR CCA 90 bp CTTGCTTGCTTTTTAATAACAGAGCAGAGAGAATACAAGGCCAGGAGCGGGGCCCGGGCCTCAGATAGTTaGGTCCAAGCGGGTGACCTA +
Preference number: 4 (lower is better)
Translates to: LACFLITEQREYKARSGARASDS*VQAGDL
Trigger: TAGGTCACCCGCTTGGACCCAACTATCTGAGGCCCG...GGCCCCGCTCCTGGCCTTGTATTCTCTCTGCTCTGTTATTAAAAAGCAAGCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000355025.7
CDS-3UTR CCA 90 bp AGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACATGACTGGACGGGGCTaGGTAGTTAGTCTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: SNEGDSSDGTSLGSLGHHMTGRG*VVSLLF
Trigger: AAAAAGGAGACTAACTACCCAGCCCCGTCCAGTCAT...GTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGTTCGCCAAGCACCACTaGCTCAGATGCAGCCCCAGA +
Preference number: 4 (lower is better)
Translates to: GNAFMSAMRVTLVTELVLFAKHH*LRCSPR
Trigger: TCTGGGGCTGCATCTGAGCCAGTGGTGCTTGGCGAA...CAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTTTCGCCAAGCACCACTaGCTCAGATGCAGCCCCAGA +
Preference number: 4 (lower is better)
Translates to: KGKRLHVSNEGDSSDGTSFAKHH*LRCSPR
Trigger: TCTGGGGCTGCATCTGAGCCAGTGGTGCTTGGCGAA...ACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp CGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACGGTCCTCTTCCTGTaGATAGGTTGCTCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: RRKGKRLHVSNEGDSSDGTVLFL*IGCSLL
Trigger: GAGGAGAGAGCAACCTATCCACAGGAAGAGGACCGT...TCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCGCCTCTCGGCATCGGTaGTTTCTCCTTACTCTTCAG +
Preference number: 4 (lower is better)
Translates to: RGWERQLERRRKGKRLHVASRHR*FLLTLQ
Trigger: CTGAAGAGTAAGGAGAAACCACCGATGCCGAGAGGC...GACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCCTCTCGGCATCGGTaGTTTCTCCTTACTCTTCAG +
Preference number: 4 (lower is better)
Translates to: EDGKGSWRDEGRGNAFMSASRHR*FLLTLQ
Trigger: CTGAAGAGTAAGGAGAAACCACCGATGCCGAGAGGC...TGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAAGAGGAAAACAGGACTTaGGGTGCTCCTGTGAGAGCG +
Preference number: 4 (lower is better)
Translates to: EGRGNAFMSAMRVTLVTEEENRT*GAPVRA
Trigger: CGCTCTCACAGGAGCACCCCAAGTCCTGTTTTCCTC...TTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CCA 90 bp GAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGCAGTGGCTCTCAGCATaGGTGGAATGTGCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: ERQLERRRKGKRLHVSNEQWLSA*VECAAP
Trigger: AGGAGCAGCACATTCCACCCATGCTGAGAGCCACTG...CTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR CCA 90 bp TGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGGATACAGACCAAGCTaGGAGCAACCAGTGGCTCTC +
Preference number: 4 (lower is better)
Translates to: WRDEGRGNAFMSAMRVTLGYRPS*EQPVAL
Trigger: GAGAGCCACTGGTTGCTCCCAGCTTGGTCTGTATCC...TAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR CCA 90 bp AGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAAGCATTTCAGGGGGTaGGAGCTGCTCAGGAGGATA +
Preference number: 4 (lower is better)
Translates to: RGWERQLERRRKGKRLHVKHFRG*ELLRRI
Trigger: TATCCTCCTGAGCAGCTCCCACCCCCTGAAATGCTT...GACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR TCA 90 bp TGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGGGGGTGGGCCTTTaGTTAAGGTTCTTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: WRDEGRGNAFMSAMRVTLVGVGL*LRFFQK
Trigger: CTTCTGGAAGAACCTTAATCAAAGGCCCACCCCCAC...TAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCGTGGGGGTGGGCCTTTaGTTAAGGTTCTTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: RGNAFMSAMRVTLVTELVVGVGL*LRFFQK
Trigger: CTTCTGGAAGAACCTTAATCAAAGGCCCACCCCCAC...GACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR TCA 90 bp AAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGTCGTTGATGATGCTCTaGCGCCTTCTTAGGTCCTCC +
Preference number: 4 (lower is better)
Translates to: KGSWRDEGRGNAFMSAMRSLMML*RLLRSS
Trigger: GGAGGACCTAAGAAGGCGTCAGAGCATCATCAACGA...CCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp TTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTTTGACTCCATCATCCTaGACCTGCATGACTGGACGG +
Preference number: 4 (lower is better)
Translates to: LERRRKGKRLHVSNEGDSLTPSS*TCMTGR
Trigger: CCGTCCAGTCATGCAGGTGCAGGATGATGGAGTCAA...AGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACTTGACTCCATCATCCTaGACCTGCATGACTGGACGG +
Preference number: 4 (lower is better)
Translates to: RRRKGKRLHVSNEGDSSDLTPSS*TCMTGR
Trigger: CCGTCCAGTCATGCAGGTGCAGGATGATGGAGTCAA...GTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp TGCTTGCTTTTTAATAACAGAGCAGAGAGAATACAAGGCCAGGAGCGGGGCCTGACTCCCCCAAGGCCCTaGTGCTGCATTCCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: CLLFNNRAERIQGQERGLTPPRP*CCIPSK
Trigger: TTTGGAAGGAATGCAGCAGCAGGGCCTTGGGGGAGT...CAGGCCCCGCTCCTGGCCTTGTATTCTCTCTGCTCTGTTATTAAAAAGCAAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR GCA 90 bp TGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTACAGGGTATTCATTGGTaGTGGGGAATCCACAGCCCT +
Preference number: 4 (lower is better)
Translates to: WRDEGRGNAFMSAMRVTLQGIHW*WGIHSP
Trigger: AGGGCTGTGGATTCCCCAGCACCAATGAATACCCTG...TAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCCAGGGTATTCATTGGTaGTGGGGAATCCACAGCCCT +
Preference number: 4 (lower is better)
Translates to: RGNAFMSAMRVTLVTELVQGIHW*WGIHSP
Trigger: AGGGCTGTGGATTCCCCAGCACCAATGAATACCCTG...GACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCCTGAGGCAGGAGAATTaGTTGAACCAGGGAGGCAGA +
Preference number: 4 (lower is better)
Translates to: RGNAFMSAMRVTLVTELVLRQEN*LNQGGR
Trigger: TCTGCCTCCCTGGTTCAAGCAATTCTCCTGCCTCAG...GACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000574617.1
CDS-3UTR CCA 90 bp GAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAAAAGCATTTCAGGGGGTaGGAGCAGCATGGGTGGAAT +
Preference number: 4 (lower is better)
Translates to: EGRGNAFMSAMRVTLVTEKHFRG*EQHGWN
Trigger: ATTCCACCCATGCTGCTCCCACCCCCTGAAATGCTT...TTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CCA 90 bp TCAGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGGGTATTCATTGGTGCTaGGGAATCCACAGCCCTCTT +
Preference number: 4 (lower is better)
Translates to: SEDGKGSWRDEGRGNAFMGIHWC*GIHSPL
Trigger: AAGAGGGCTGTGGATTCCCCAGCACCAATGAATACC...CATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCGATCAGGGTATTCATTaGTGCTGGGGAATCCACAGC +
Preference number: 4 (lower is better)
Translates to: RGWERQLERRRKGKRLHVDQGIH*CWGIHS
Trigger: GCTGTGGATTCCCCAGCACCAATGAATACCCTGATC...GACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp AGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCACGGTCCTCTTCCTGTaGATAGGTTGCTCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: RGNAFMSAMRVTLVTELVTVLFL*IGCSLL
Trigger: GAGGAGAGAGCAACCTATCCACAGGAAGAGGACCGT...GACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAAAAGCATTTCAGGGGGTaGGAGCTGCTCAGGAGGATA +
Preference number: 4 (lower is better)
Translates to: EGRGNAFMSAMRVTLVTEKHFRG*ELLRRI
Trigger: TATCCTCCTGAGCAGCTCCCACCCCCTGAAATGCTT...TTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS-3UTR GCA 90 bp TCAGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTTCCTGTGGATAGGTTaGTCTCTCCTCTTCCAGATC +
Preference number: 4 (lower is better)
Translates to: SEDGKGSWRDEGRGNAFMFLWIG*SLLFQI
Trigger: GATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAA...CATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAATGACTGGACGGGGCTaGGTAGTTAGTCTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: EDGKGSWRDEGRGNAFMSMTGRG*VVSLLF
Trigger: AAAAAGGAGACTAACTACCCAGCCCCGTCCAGTCAT...TGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp TCAGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGATGACTGGACGGGGCTaGGTAGTTAGTCTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: SEDGKGSWRDEGRGNAFMMTGRG*VVSLLF
Trigger: AAAAAGGAGACTAACTACCCAGCCCCGTCCAGTCAT...CATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GCTTGCTTTTTAATAACAGAGCAGAGAGAATACAAGGCCAGGAGCGGGGCCTGGGGTATTCATTGGTGCTaGGGAATCCACAGCCCTCTT +
Preference number: 4 (lower is better)
Translates to: ACFLITEQREYKARSGAWGIHWC*GIHSPL
Trigger: AAGAGGGCTGTGGATTCCCCAGCACCAATGAATACC...CCAGGCCCCGCTCCTGGCCTTGTATTCTCTCTGCTCTGTTATTAAAAAGCAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CCA 90 bp AAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTGCCTCTCGGCATCGGTaGTTTCTCCTTACTCTTCAG +
Preference number: 4 (lower is better)
Translates to: KGKRLHVSNEGDSSDGTSASRHR*FLLTLQ
Trigger: CTGAAGAGTAAGGAGAAACCACCGATGCCGAGAGGC...ACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp GAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAATTCCTGTGGATAGGTTaGTCTCTCCTCTTCCAGATC +
Preference number: 4 (lower is better)
Translates to: EGRGNAFMSAMRVTLVTEFLWIG*SLLFQI
Trigger: GATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAA...TTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR GCA 90 bp AGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTCCTGTGGATAGGTTaGTCTCTCCTCTTCCAGATC +
Preference number: 4 (lower is better)
Translates to: RGNAFMSAMRVTLVTELVFLWIG*SLLFQI
Trigger: GATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAA...GACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp GGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTATTCATTGGTGCTaGGGAATCCACAGCCCTCTT +
Preference number: 4 (lower is better)
Translates to: GNAFMSAMRVTLVTELVLGIHWC*GIHSPL
Trigger: AAGAGGGCTGTGGATTCCCCAGCACCAATGAATACC...CAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CCA 90 bp TGCTTGCTTTTTAATAACAGAGCAGAGAGAATACAAGGCCAGGAGCGGGGCCTGGATCAGGGTATTCATTaGTGCTGGGGAATCCACAGC +
Preference number: 4 (lower is better)
Translates to: CLLFNNRAERIQGQERGLDQGIH*CWGIHS
Trigger: GCTGTGGATTCCCCAGCACCAATGAATACCCTGATC...CAGGCCCCGCTCCTGGCCTTGTATTCTCTCTGCTCTGTTATTAAAAAGCAAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR GCA 90 bp AAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTTTCCTGTGGATAGGTTaGTCTCTCCTCTTCCAGATC +
Preference number: 4 (lower is better)
Translates to: KGKRLHVSNEGDSSDGTSFLWIG*SLLFQI
Trigger: GATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAA...ACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp AAACAGGACTTGGGGTGCTCCTGTGAGAGCGGTGGGTTGAGATGGGAGCCCACGTGTGAGAGCGGTGGGTaGAGATGGGAGCCCACGGGG +
Preference number: 5 (lower is better)
Translates to: KQDLGCSCESGGLRWEPTCESGG*RWEPTG
Trigger: CCCCGTGGGCTCCCATCTCAACCCACCGCTCTCACA...CGTGGGCTCCCATCTCAACCCACCGCTCTCACAGGAGCACCCCAAGTCCTGTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CAA 90 bp GTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGTGTGAGAGCGGTGGGTaGAGATGGGAGCCCACGGGG +
Preference number: 5 (lower is better)
Translates to: VTLVTELVLGPWGTTSLSCESGG*RWEPTG
Trigger: CCCCGTGGGCTCCCATCTCAACCCACCGCTCTCACA...CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp AGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTGTGAGAGCGGTGGGTaGAGATGGGAGCCCACGGGG +
Preference number: 5 (lower is better)
Translates to: SNEGDSSDGTSLGSLGHHCESGG*RWEPTG
Trigger: CCCCGTGGGCTCCCATCTCAACCCACCGCTCTCACA...GTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp AGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCGTGACGGAACTAGTCTaGGGTCCCTGGGGCACCACT +
Preference number: 5 (lower is better)
Translates to: RVTLVTELVLGPWGTTSLVTELV*GPWGTT
Trigger: AGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC...GAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp GGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGTGTGAGAGCGGTGGGTaGAGATGGGAGCCCACGGGG +
Preference number: 5 (lower is better)
Translates to: GKGSWRDEGRGNAFMSAMCESGG*RWEPTG
Trigger: CCCCGTGGGCTCCCATCTCAACCCACCGCTCTCACA...CATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp AGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTTGGAGAGTGACGGAACTAGTCTaGGGTCCCTGGGGCACCACT +
Preference number: 5 (lower is better)
Translates to: SPRGLLMPSSEDGKGSWRVTELV*GPWGTT
Trigger: AGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC...TCTCCAACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS TCA 90 bp TCTCCTTACTCTTCAGACGCTGCCAACTCCATCCCCCAGGGATTGTaGAGGGGGTTCCTTCTGGCTGTGACAGTGCTGAACGAGGCCAGA +
Preference number: 5 (lower is better)
Translates to: SPYSSDAANSIPQGL*RGFLLAVTVLNEAR
Trigger: TCTGGCCTCGTTCAGCACTGTCACAGCCAGAAGGAACCCCCTTCACAATCCCTGGGGGATGGAGTTGGCAGCGTCTGAAGAGTAAGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS GCA 90 bp GGCCTCCTCTTCTTTCTTCTCCAAAGCATTTCAGGGGGTGGGAGCTaGTCAGGAGGATACAGACCAAGCTGGGAGCAACCAGTGGCTCTC +
Preference number: 5 (lower is better)
Translates to: GLLFFLLQSISGGGS*SGGYRPSWEQPVAL
Trigger: GAGAGCCACTGGTTGCTCCCAGCTTGGTCTGTATCCTCCTGAGCAGCTCCCACCCCCTGAAATGCTTTGGAGAAGAAAGAAGAGGAGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000574617.1
ENST00000576820.5
CDS CCA 90 bp ATGAGGTTGACTCCATCATCCTGCACCTGCATGACTGGACGGGGCTaGGTAGTTAGTCTCCTTTTTGGTGCGTGCGGAAGCGGCAGATGG +
Preference number: 5 (lower is better)
Translates to: MRLTPSSCTCMTGRG*VVSLLFGACGSGRW
Trigger: CCATCTGCCGCTTCCGCACGCACCAAAAAGGAGACTAACTACCCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGGAGTCAACCTCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000355025.7
CDS-3UTR CAA 90 bp ATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCACCACCCTGGAACACTaGGCAAAGGGGATGAGGTTG +
Preference number: 5 (lower is better)
Translates to: MRVTLVTELVLGPWGTTSTTLEH*AKGMRL
Trigger: CAACCTCATCCCCTTTGCCAAGTGTTCCAGGGTGGT...GCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS GCA 90 bp GTGGATAGGTTGCTCTCTCCTCTTCCAGATCAGGGTATTCATTGGTaGTGGGGAATCCACAGCCCTCTTCGCCAAGCACCACTGGCTCAG +
Preference number: 5 (lower is better)
Translates to: VDRLLSPLPDQGIHW*WGIHSPLRQAPLAQ
Trigger: CTGAGCCAGTGGTGCTTGGCGAAGAGGGCTGTGGATTCCCCAGCACCAATGAATACCCTGATCTGGAAGAGGAGAGAGCAACCTATCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 90 bp CCTGTGGATAGGTTGCTCTCTCCTCTTCCAGATCAGGGTATTCATTaGTGCTGGGGAATCCACAGCCCTCTTCGCCAAGCACCACTGGCT +
Preference number: 5 (lower is better)
Translates to: PVDRLLSPLPDQGIH*CWGIHSPLRQAPLA
Trigger: AGCCAGTGGTGCTTGGCGAAGAGGGCTGTGGATTCCCCAGCACCAATGAATACCCTGATCTGGAAGAGGAGAGAGCAACCTATCCACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 90 bp TCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTaGGGCACCACTAGCCTCTCGGCATCGGTGGTTTCTCCTTACTCT +
Preference number: 5 (lower is better)
Translates to: SAMRVTLVTELVLGP*GTTSLSASVVSPYS
Trigger: AGAGTAAGGAGAAACCACCGATGCCGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp GTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCCTCTCGCTTCCTGTGGATAGGTaGCTCTCTCCTCTTCCAGAT +
Preference number: 5 (lower is better)
Translates to: VTLVTELVLGPWGTTSLSLPVDR*LSPLPD
Trigger: ATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAAG...CGAGAGGCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp GGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTGACGGAACTAGTCTaGGGTCCCTGGGGCACCACT +
Preference number: 5 (lower is better)
Translates to: GRGNAFMSAMRVTLVTELVTELV*GPWGTT
Trigger: AGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC...TAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp AGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGGTGACGGAACTAGTCTaGGGTCCCTGGGGCACCACT +
Preference number: 5 (lower is better)
Translates to: RDEGRGNAFMSAMRVTLVVTELV*GPWGTT
Trigger: AGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCAC...CACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp TCAGAGGATGGGAAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGGGATGGGAAAGGCAGTaGGAGAGACGAAGGAAGGGG +
Preference number: 5 (lower is better)
Translates to: SEDGKGSWRDEGRGNAFMGWERQ*ERRRKG
Trigger: CCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCC...CATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCCTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp CGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCGGAGGAAAACAGGACTaGGGGTGCTCCTGTGAGAGC +
Preference number: 5 (lower is better)
Translates to: RLHVSNEGDSSDGTSLGSGGKQD*GCSCES
Trigger: GCTCTCACAGGAGCACCCCAAGTCCTGTTTTCCTCC...GGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS GCA 90 bp GGCCCTGCCAGGAGTGAGAAAACGGTCCTCTTCCTGTGGATAGGTTaGTCTCTCCTCTTCCAGATCAGGGTATTCATTGGTGCTGGGGAA +
Preference number: 5 (lower is better)
Translates to: GPARSEKTVLFLWIG*SLLFQIRVFIGAGE
Trigger: TTCCCCAGCACCAATGAATACCCTGATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAAGAGGACCGTTTTCTCACTCCTGGCAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 90 bp GATAGGTTGCTCTCTCCTCTTCCAGATCAGGGTATTCATTGGTGCTaGGGAATCCACAGCCCTCTTCGCCAAGCACCACTGGCTCAGATG +
Preference number: 5 (lower is better)
Translates to: DRLLSPLPDQGIHWC*GIHSPLRQAPLAQM
Trigger: CATCTGAGCCAGTGGTGCTTGGCGAAGAGGGCTGTGGATTCCCCAGCACCAATGAATACCCTGATCTGGAAGAGGAGAGAGCAACCTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp GATGGGAGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTAGATCAGGGTATTCATaGGTGCTGGGGAATCCACAG +
Preference number: 5 (lower is better)
Translates to: DGSPRGLLMPSSEDGKGSRSGYS*VLGNPQ
Trigger: CTGTGGATTCCCCAGCACCAATGAATACCCTGATCT...ACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCTCCCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp ATGAGGGTGACTCTAGTGACGGAACTAGTCTTGGGTCCCTGGGGCACCACTAGCAGATCAGGGTATTCATaGGTGCTGGGGAATCCACAG +
Preference number: 5 (lower is better)
Translates to: MRVTLVTELVLGPWGTTSRSGYS*VLGNPQ
Trigger: CTGTGGATTCCCCAGCACCAATGAATACCCTGATCT...GCTAGTGGTGCCCCAGGGACCCAAGACTAGTTCCGTCACTAGAGTCACCCTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp TTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTGGATGGGAAAGGCAGTaGGAGAGACGAAGGAAGGGG +
Preference number: 5 (lower is better)
Translates to: LERRRKGKRLHVSNEGDSGWERQ*ERRRKG
Trigger: CCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCC...AGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp AGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGATGGGAAAGGCAGTaGGAGAGACGAAGGAAGGGG +
Preference number: 5 (lower is better)
Translates to: RRRKGKRLHVSNEGDSSDGWERQ*ERRRKG
Trigger: CCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCC...GTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp AAAGGCAGTTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGGATGGGAAAGGCAGTaGGAGAGACGAAGGAAGGGG +
Preference number: 5 (lower is better)
Translates to: KGSWRDEGRGNAFMSAMRGWERQ*ERRRKG
Trigger: CCCCTTCCTTCGTCTCTCCAACTGCCTTTCCCATCC...CCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAACTGCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp GGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGGAGGAAAACAGGACTaGGGGTGCTCCTGTGAGAGC +
Preference number: 5 (lower is better)
Translates to: GRGNAFMSAMRVTLVTELGGKQD*GCSCES
Trigger: GCTCTCACAGGAGCACCCCAAGTCCTGTTTTCCTCC...TAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS GCA 90 bp ACCCTGGAACACTTGGCAAAGGGGATGAGGTTGACTCCATCATCCTaGACCTGCATGACTGGACGGGGCTGGGTAGTTAGTCTCCTTTTT +
Preference number: 5 (lower is better)
Translates to: TLEHLAKGMRLTPSS*TCMTGRGWVVSLLF
Trigger: AAAAAGGAGACTAACTACCCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGGAGTCAACCTCATCCCCTTTGCCAAGTGTTCCAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 90 bp AAGCAGCTGGGCCCTGCCAGGAGTGAGAAAACGGTCCTCTTCCTGTaGATAGGTTGCTCTCTCCTCTTCCAGATCAGGGTATTCATTGGT +
Preference number: 5 (lower is better)
Translates to: KQLGPARSEKTVLFL*IGCSLLFQIRVFIG
Trigger: ACCAATGAATACCCTGATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAAGAGGACCGTTTTCTCACTCCTGGCAGGGCCCAGCTGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 90 bp ATGAGGTTGACTCCATCATCCTGCACCTGCATGACTGGACGGGGCTaGGTAGTTAGTCTCCTTTTTGGTGCTAGATCCAAGGGCAGGATG +
Preference number: 5 (lower is better)
Translates to: MRLTPSSCTCMTGRG*VVSLLFGARSKGRM
Trigger: CATCCTGCCCTTGGATCTAGCACCAAAAAGGAGACTAACTACCCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGGAGTCAACCTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp GCTTGCTTTTTAATAACAGAGCAGAGAGAATACAAGGCCAGGAGCGGGGCCTGGACCACCCTGGAACACTaGGCAAAGGGGATGAGGTTG +
Preference number: 5 (lower is better)
Translates to: ACFLITEQREYKARSGAWTTLEH*AKGMRL
Trigger: CAACCTCATCCCCTTTGCCAAGTGTTCCAGGGTGGT...CCAGGCCCCGCTCCTGGCCTTGTATTCTCTCTGCTCTGTTATTAAAAAGCAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CAA 90 bp GAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAAACCACCCTGGAACACTaGGCAAAGGGGATGAGGTTG +
Preference number: 5 (lower is better)
Translates to: EGRGNAFMSAMRVTLVTETTLEH*AKGMRL
Trigger: CAACCTCATCCCCTTTGCCAAGTGTTCCAGGGTGGT...TTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp AGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAGTCACCACCCTGGAACACTaGGCAAAGGGGATGAGGTTG +
Preference number: 5 (lower is better)
Translates to: RGNAFMSAMRVTLVTELVTTLEH*AKGMRL
Trigger: CAACCTCATCCCCTTTGCCAAGTGTTCCAGGGTGGT...GACTAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp AGCCCACGGGGGCTGTTAATGCCTAGTTCAGAGGATGGGAAAGGCAGTTGGAGACTTCCTGTGGATAGGTaGCTCTCTCCTCTTCCAGAT +
Preference number: 5 (lower is better)
Translates to: SPRGLLMPSSEDGKGSWRLPVDR*LSPLPD
Trigger: ATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAAG...TCTCCAACTGCCTTTCCCATCCTCTGAACTAGGCATTAACAGCCCCCGTGGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 90 bp ATGAGGTTGACTCCATCATCCTGCACCTGCATGACTGGACGGGGCTaGGTAGTTAGTCTCCTTTTTGGTGCTGTAATCCCAGCTACTCAG +
Preference number: 5 (lower is better)
Translates to: MRLTPSSCTCMTGRG*VVSLLFGAVIPATQ
Trigger: CTGAGTAGCTGGGATTACAGCACCAAAAAGGAGACTAACTACCCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGGAGTCAACCTCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000574617.1
CDS-3UTR CAA 90 bp GCTTGCTTTTTAATAACAGAGCAGAGAGAATACAAGGCCAGGAGCGGGGCCTGGAGTGGGGGTGGGCCTTaGATTAAGGTTCTTCCAGAA +
Preference number: 5 (lower is better)
Translates to: ACFLITEQREYKARSGAWSGGGP*IKVLPE
Trigger: TTCTGGAAGAACCTTAATCAAAGGCCCACCCCCACT...CCAGGCCCCGCTCCTGGCCTTGTATTCTCTCTGCTCTGTTATTAAAAAGCAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS-3UTR CAA 90 bp GGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTAAGATCAGGGTATTCATaGGTGCTGGGGAATCCACAG +
Preference number: 5 (lower is better)
Translates to: GRGNAFMSAMRVTLVTELRSGYS*VLGNPQ
Trigger: CTGTGGATTCCCCAGCACCAATGAATACCCTGATCT...TAGTTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp TTGGAGAGACGAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGATCAGGGTATTCATaGGTGCTGGGGAATCCACAG +
Preference number: 5 (lower is better)
Translates to: LERRRKGKRLHVSNEGDSRSGYS*VLGNPQ
Trigger: CTGTGGATTCCCCAGCACCAATGAATACCCTGATCT...AGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTCGTCTCTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp GAAGGAAGGGGAAACGCCTTCATGTCAGCAATGAGGGTGACTCTAGTGACGGAACTTCCTGTGGATAGGTaGCTCTCTCCTCTTCCAGAT +
Preference number: 5 (lower is better)
Translates to: EGRGNAFMSAMRVTLVTELPVDR*LSPLPD
Trigger: ATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAAG...TTCCGTCACTAGAGTCACCCTCATTGCTGACATGAAGGCGTTTCCCCTTCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS-3UTR CAA 90 bp CTTGCTTGCTTTTTAATAACAGAGCAGAGAGAATACAAGGCCAGGAGCGGGGCCCTTCCTGTGGATAGGTaGCTCTCTCCTCTTCCAGAT +
Preference number: 5 (lower is better)
Translates to: LACFLITEQREYKARSGALPVDR*LSPLPD
Trigger: ATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAAG...GGCCCCGCTCCTGGCCTTGTATTCTCTCTGCTCTGTTATTAAAAAGCAAGCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000575780.5
CDS TCA 72 bp TGCTCTGACGCCTTCTTAGGTCCTCCAGGTGGTAAGTaGCAGCCCTCACCCGGGCGGGGACTCCCCCAAGGC +
Preference number: 6 (lower is better)
Translates to: CSDAFLGPPGGK*QPSPGRGLPQG
Trigger: GCCTTGGGGGAGTCCCCGCCCGGGTGAGGGCTGTCACTTACCACCTGGAGGACCTAAGAAGGCGTCAGAGCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS GCA 72 bp ACAGCCCTCACCCGGGCGGGGACTCCCCCAAGGCCCTaGTGCTGCATTCCTTCCAAACATGGCCTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: TALTRAGTPPRP*CCIPSKHGLLF
Trigger: GAAGAGGAGGCCATGTTTGGAAGGAATGCAGCAGCAGGGCCTTGGGGGAGTCCCCGCCCGGGTGAGGGCTGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS GCA 72 bp GCCCTCACCCGGGCGGGGACTCCCCCAAGGCCCTGCTaGTGCATTCCTTCCAAACATGGCCTCCTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: ALTRAGTPPRPC*CIPSKHGLLFF
Trigger: AAAGAAGAGGAGGCCATGTTTGGAAGGAATGCAGCAGCAGGGCCTTGGGGGAGTCCCCGCCCGGGTGAGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 72 bp CAGCGGGAGCTGCGGGGCATTCGGGCCTCAGATAGTTaGGTCCAAGCGGGTGACCTAGATCCAAGGGCAGGA +
Preference number: 6 (lower is better)
Translates to: QRELRGIRASDS*VQAGDLDPRAG
Trigger: TCCTGCCCTTGGATCTAGGTCACCCGCTTGGACCCAACTATCTGAGGCCCGAATGCCCCGCAGCTCCCGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000355025.7
ENST00000574617.1
CDS TCA 72 bp TCTTCAGACGCTGCCAACTCCATCCCCCAGGGATTGTaGAGGGGGTTCCTTCTGGCTGTGACAGTGCTGAAC +
Preference number: 6 (lower is better)
Translates to: SSDAANSIPQGL*RGFLLAVTVLN
Trigger: GTTCAGCACTGTCACAGCCAGAAGGAACCCCCTTCACAATCCCTGGGGGATGGAGTTGGCAGCGTCTGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS GCA 72 bp CTCGGCATCGGTGGTTTCTCCTTACTCTTCAGACGCTaGCAACTCCATCCCCCAGGGATTGTGAAGGGGGTT +
Preference number: 6 (lower is better)
Translates to: LGIGGFSLLFRR*QLHPPGIVKGV
Trigger: AACCCCCTTCACAATCCCTGGGGGATGGAGTTGGCAGCGTCTGAAGAGTAAGGAGAAACCACCGATGCCGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 72 bp ACTCCATCATCCTGCACCTGCATGACTGGACGGGGCTaGGTAGTTAGTCTCCTTTTTGGTGCGTGCGGAAGC +
Preference number: 6 (lower is better)
Translates to: TPSSCTCMTGRG*VVSLLFGACGS
Trigger: GCTTCCGCACGCACCAAAAAGGAGACTAACTACCCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGGAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000355025.7
CDS GCA 72 bp GCAAAGGGGATGAGGTTGACTCCATCATCCTGCACCTaGATGACTGGACGGGGCTGGGTAGTTAGTCTCCTT +
Preference number: 6 (lower is better)
Translates to: AKGMRLTPSSCT*MTGRGWVVSLL
Trigger: AAGGAGACTAACTACCCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGGAGTCAACCTCATCCCCTTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS GCA 72 bp CACTTGGCAAAGGGGATGAGGTTGACTCCATCATCCTaGACCTGCATGACTGGACGGGGCTGGGTAGTTAGT +
Preference number: 6 (lower is better)
Translates to: HLAKGMRLTPSS*TCMTGRGWVVS
Trigger: ACTAACTACCCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGGAGTCAACCTCATCCCCTTTGCCAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 72 bp CTCTCTCCTCTTCCAGATCAGGGTATTCATTGGTGCTaGGGAATCCACAGCCCTCTTCGCCAAGCACCACTG +
Preference number: 6 (lower is better)
Translates to: LSPLPDQGIHWC*GIHSPLRQAPL
Trigger: CAGTGGTGCTTGGCGAAGAGGGCTGTGGATTCCCCAGCACCAATGAATACCCTGATCTGGAAGAGGAGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 72 bp GGCCCTGCCAGGAGTGAGAAAACGGTCCTCTTCCTGTaGATAGGTTGCTCTCTCCTCTTCCAGATCAGGGTA +
Preference number: 6 (lower is better)
Translates to: GPARSEKTVLFL*IGCSLLFQIRV
Trigger: TACCCTGATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAAGAGGACCGTTTTCTCACTCCTGGCAGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS GCA 72 bp TTGCTCTCTCCTCTTCCAGATCAGGGTATTCATTGGTaGTGGGGAATCCACAGCCCTCTTCGCCAAGCACCA +
Preference number: 6 (lower is better)
Translates to: LLSPLPDQGIHW*WGIHSPLRQAP
Trigger: TGGTGCTTGGCGAAGAGGGCTGTGGATTCCCCAGCACCAATGAATACCCTGATCTGGAAGAGGAGAGAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 72 bp AGGTTGCTCTCTCCTCTTCCAGATCAGGGTATTCATTaGTGCTGGGGAATCCACAGCCCTCTTCGCCAAGCA +
Preference number: 6 (lower is better)
Translates to: RLLSPLPDQGIH*CWGIHSPLRQA
Trigger: TGCTTGGCGAAGAGGGCTGTGGATTCCCCAGCACCAATGAATACCCTGATCTGGAAGAGGAGAGAGCAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5
CDS CCA 72 bp ACTCCATCATCCTGCACCTGCATGACTGGACGGGGCTaGGTAGTTAGTCTCCTTTTTGGTGCTGTAATCCCA +
Preference number: 6 (lower is better)
Translates to: TPSSCTCMTGRG*VVSLLFGAVIP
Trigger: TGGGATTACAGCACCAAAAAGGAGACTAACTACCCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000574617.1
CDS CCA 72 bp ACTCCATCATCCTGCACCTGCATGACTGGACGGGGCTaGGTAGTTAGTCTCCTTTTTGGTGCTAGATCCAAG +
Preference number: 6 (lower is better)
Translates to: TPSSCTCMTGRG*VVSLLFGARSK
Trigger: CTTGGATCTAGCACCAAAAAGGAGACTAACTACCCAGCCCCGTCCAGTCATGCAGGTGCAGGATGATGGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000575780.5
ENST00000576820.5
CDS GCA 72 bp AGGAGTGAGAAAACGGTCCTCTTCCTGTGGATAGGTTaGTCTCTCCTCTTCCAGATCAGGGTATTCATTGGT +
Preference number: 6 (lower is better)
Translates to: RSEKTVLFLWIG*SLLFQIRVFIG
Trigger: ACCAATGAATACCCTGATCTGGAAGAGGAGAGAGCAACCTATCCACAGGAAGAGGACCGTTTTCTCACTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000355025.7
ENST00000574617.1
ENST00000575780.5
ENST00000576820.5