Pregenerated sensors for HOXD4 (Homo sapiens)
Ensembl gene IDs: ENSG00000170166Ensembl transcript IDs: ENST00000306324.4
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTTAATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACTTCGGCTCAGCCTGGTaGGCAGGGAGAGATGGGCCC | + |
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Preference number: 2 (lower is better) Translates to: FNDSPRFYVLSSSCHIIYFGSAW*AGRDGP Trigger: GGGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAA...GTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| 3UTR-3UTR CAA 90 bp | CCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACTTAGAGAGAGAACCGAGGGCGGCCTGCTaGTCCCAGGTCCACCCCACA | + |
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Preference number: 3 (lower is better) Translates to: PRFYVLSSSCHIIYLEREPRAAC*SQVHPT Trigger: TGTGGGGTGGACCTGGGACAAGCAGGCCGCCCTCGG...TTCTCTCTCTAAGTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | CCCGGCCTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCACCGCCGGGGCCGCCTaGCTCTTGTCCGTGACCCCG | + |
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Preference number: 4 (lower is better) Translates to: PGLPPQLRLSLVRRERWATAGAA*LLSVTP Trigger: CGGGGTCACGGACAAGAGCCAGGCGGCCCCGGCGGT...GGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAGGCCGGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR GCA 90 bp | CCCGGCCTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCCAGGCCCGGGGCCGCTaGCTCCGAAAGGCTGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: PGLPPQLRLSLVRRERWAQARGR*LRKAAH Trigger: GTGAGCAGCCTTTCGGAGGCAGCGGCCCCGGGCCTG...GGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAGGCCGGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR GCA 90 bp | CCGGCCTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCCACAGCAGGCCCGGCCTaGCCCCGCAGCTTCGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PACPRSFGSAWCAGRDGPTAGPA*PRSFGS Trigger: TGAGCCGAAGCTGCGGGGGCAGGCCGGGCCTGCTGT...GGGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAGGCCGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR GCA 90 bp | CCCGGCCTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCTTCGGCTCAGCCTGGTaGGCAGGGAGAGATGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: PGLPPQLRLSLVRRERWAFGSAW*AGRDGP Trigger: GGGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAA...GGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAGGCCGGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR GCA 90 bp | CCCGGCCTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCGCCATCGGCTGTAAATaGTGGCTGGGGGCGACTGAG | + |
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Preference number: 4 (lower is better) Translates to: PGLPPQLRLSLVRRERWAAIGCK*WLGATE Trigger: CTCAGTCGCCCCCAGCCAGCATTTACAGCCGATGGC...GGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAGGCCGGG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | CCCGGCCTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCGCTGTAAATGCTGGCTaGGGGCGACTGAGGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: PGLPPQLRLSLVRRERWAAVNAG*GRLRRS Trigger: GCTCCTCCTCAGTCGCCCCCAGCCAGCATTTACAGC...GGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAGGCCGGG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR GCA 90 bp | CAGGATGCTAACCTAGTCCGAGGGCGGCCTGCTTGTCCCAGGTCCACCCCACAGGGCCGGCTGCTTGAGTaGCGTCCCGGAGGGCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: QDANLVRGRPACPRSTPQGRLLE*RPGGRL Trigger: CAGCCGCCCTCCGGGACGGCACTCAAGCAGCCGGCC...CTGTGGGGTGGACCTGGGACAAGCAGGCCGCCCTCGGACTAGGTTAGCATCCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | CTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCCAGGGTAGCTTCGGCTCAGCCTaGTGCGCAGGGAGAGATGGG | + |
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Preference number: 4 (lower is better) Translates to: LPPQLRLSLVRRERWAQGSFGSA*CAGRDG Trigger: CCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCT...ACCCTGGGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR TCA 90 bp | CCCGGCCTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCGACAGACACAGGGTGTaGGCGATTTCAATCCGACGG | + |
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Preference number: 4 (lower is better) Translates to: PGLPPQLRLSLVRRERWADRHRV*AISIRR Trigger: CCGTCGGATTGAAATCGCTCACACCCTGTGTCTGTC...GGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAGGCCGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | CCCGGCCTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCCCCCACCGGTGTAGTTaGGGTTCACCGAATTCACGT | + |
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Preference number: 4 (lower is better) Translates to: PGLPPQLRLSLVRRERWAPHRCS*GSPNSR Trigger: ACGTGAATTCGGTGAACCCCAACTACACCGGTGGGG...GGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAGGCCGGG 68% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | CTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCCAGGGTATCGGCTGTAAATGCTaGCTGGGGGCGACTGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LPPQLRLSLVRRERWAQGIGCKC*LGATEE Trigger: CTCCTCAGTCGCCCCCAGCCAGCATTTACAGCCGAT...ACCCTGGGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | CCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCCAGGGTCCCCTGGGGTCCACATACTTaGAGTTCACCATATACGAAC | + |
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Preference number: 4 (lower is better) Translates to: PRSFGSAWCAGRDGPRVPWGPHT*SSPYTN Trigger: GTTCGTATATGGTGAACTCCAAGTATGTGGACCCCA...GGGGACCCTGGGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | CAGGATGCTAACCTAGTCCGAGGGCGGCCTGCTTGTCCCAGGTCCACCCCACAGGTCAGGTCCGTGTGGTaGTCTTTGGCCATCGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: QDANLVRGRPACPRSTPQVRSVW*SLAIGC Trigger: ACAGCCGATGGCCAAAGACCACCACACGGACCTGAC...CTGTGGGGTGGACCTGGGACAAGCAGGCCGCCCTCGGACTAGGTTAGCATCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR GCA 90 bp | CCGGCCTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCCGTTCTCAGTAGCTCCTaGCATATAATATACTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: PACPRSFGSAWCAGRDGPVLSSS*HIIYLE Trigger: CTCTAAGTATATTATATGGCAGGAGCTACTGAGAAC...GGGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAGGCCGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR TCA 90 bp | AATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACTTACCACGGCCGGCTGCTTaGGTGCCGTCCCGGAGGGCG | + |
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Preference number: 4 (lower is better) Translates to: NDSPRFYVLSSSCHIIYLPRPAA*VPSRRA Trigger: CGCCCTCCGGGACGGCACTCAAGCAGCCGGCCGTGG...TAAGTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR TCA 90 bp | TTTAATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACCCTGGCTCTTGTCCGTaGCCCCGCGCAGGCAGCGCC | + |
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Preference number: 4 (lower is better) Translates to: FNDSPRFYVLSSSCHIIYPGSCP*PRAGSA Trigger: GGCGCTGCCTGCGCGGGGTCACGGACAAGAGCCAGG...GTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATTAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | TTTCATAAGTTTAATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATACCGAAGTCGGGCCGTaGGTAGAGCCCCGGGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: FHKFNDSPRFYVLSSSCHTEVGP*VEPRGL Trigger: CAGCCCCCGGGGCTCTACCCACGGCCCGACTTCGGT...ATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATTAAACTTATGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR GCA 90 bp | TTTCATAAGTTTAATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATAGTCCGAGGGCGGCCTaGTTGTCCCAGGTCCACCCC | + |
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Preference number: 4 (lower is better) Translates to: FHKFNDSPRFYVLSSSCHSPRAA*LSQVHP Trigger: GGGGTGGACCTGGGACAAGCAGGCCGCCCTCGGACT...ATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATTAAACTTATGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | TTTAATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACAGGCGCCGGGGGAGCTaGGCAAGGCTCTCCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: FNDSPRFYVLSSSCHIIYRRRGS*ARLSWS Trigger: GCTCCAGGAGAGCCTTGCCCAGCTCCCCCGGCGCCT...GTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATTAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | TTTCATAAGTTTAATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATTGGGCAAGGCTCTCCTaGAGCGGCGTAGTGACCGCC | + |
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Preference number: 4 (lower is better) Translates to: FHKFNDSPRFYVLSSSCHWARLS*SGVVTA Trigger: GGCGGTCACTACGCCGCTCCAGGAGAGCCTTGCCCA...ATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATTAAACTTATGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | CCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACTTAGAGAGAGAACGGAGGGCGGCTGCTTaGGGTCGGACTGACTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: PRFYVLSSSCHIIYLERERRAAA*GRTDCR Trigger: CCTACAGTCAGTCCGACCCCAAGCAGCCGCCCTCCG...TTCTCTCTCTAAGTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR GCA 90 bp | AATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACTTACTGCCTCCGAAAGGCTaGTCACCGAAGTCGGGCCGT | + |
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Preference number: 4 (lower is better) Translates to: NDSPRFYVLSSSCHIIYLLPPKG*SPKSGR Trigger: ACGGCCCGACTTCGGTGAGCAGCCTTTCGGAGGCAG...TAAGTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | CCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACTTAGAGAGAGAACCGTTCGGGACCGCTTaGGTTCCCCACCGGTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: PRFYVLSSSCHIIYLEREPFGTA*VPHRCS Trigger: ACTACACCGGTGGGGAACCCAAGCGGTCCCGAACGG...TTCTCTCTCTAAGTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | TTTCATAAGTTTAATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATGTCGTCAGGTCCGTGTaGTGGTCTTTGGCCATCGGC | + |
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Preference number: 4 (lower is better) Translates to: FHKFNDSPRFYVLSSSCHVVRSV*WSLAIG Trigger: GCCGATGGCCAAAGACCACCACACGGACCTGACGAC...ATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATTAAACTTATGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CCA 90 bp | AATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACTTACCGTGTGGTGGTCTTTaGCCATCGGCTGTAAATGCT | + |
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Preference number: 4 (lower is better) Translates to: NDSPRFYVLSSSCHIIYLPCGGL*PSAVNA Trigger: AGCATTTACAGCCGATGGCCAAAGACCACCACACGG...TAAGTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR GCA 90 bp | AATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACTTATTCACCGAATTCACGTaGACCTTCTTCATCCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: NDSPRFYVLSSSCHIIYLFTEFT*TFFIQG Trigger: CCCCTGGATGAAGAAGGTGCACGTGAATTCGGTGAA...TAAGTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS CCA 90 bp | TGGGCAAGGCTCTCCTGGAGCGGCGTAGTGACCGCCGGGGCCGCCTaGCTCTTGTCCGTGACCCCGCGCAGGCAGCGCCGAGCCAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: WARLSWSGVVTAGAA*LLSVTPRRQRRARP Trigger: GGGCCTGGCTCGGCGCTGCCTGCGCGGGGTCACGGACAAGAGCCAGGCGGCCCCGGCGGTCACTACGCCGCTCCAGGAGAGCCTTGCCCA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CAA 90 bp | CAGGATGCTAACCTAGTCCGAGGGCGGCCTGCTTGTCCCAGGTCCACCCCACAGACCACGGCCGGCTGCTaGAGTGCCGTCCCGGAGGGC | + |
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Preference number: 5 (lower is better) Translates to: QDANLVRGRPACPRSTPQTTAGC*SAVPEG Trigger: GCCCTCCGGGACGGCACTCAAGCAGCCGGCCGTGGT...CTGTGGGGTGGACCTGGGACAAGCAGGCCGCCCTCGGACTAGGTTAGCATCCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CAA 90 bp | CTGCCCCCGCAGCTTCGGCTCAGCCTGGTGCGCAGGGAGAGATGGGCCCAGGGTTCGCACGGAGGGAACTaGGGGTCCACATACTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LPPQLRLSLVRRERWAQGSHGGN*GSTYLE Trigger: CTCCAAGTATGTGGACCCCAAGTTCCCTCCGTGCGA...ACCCTGGGCCCATCTCTCCCTGCGCACCAGGCTGAGCCGAAGCTGCGGGGGCAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS CCA 90 bp | TGGGCCCAGGGTCCCCACTTCTATAAGGTCGTCAGGTCCGTGTGGTaGTCTTTGGCCATCGGCTGTAAATGCTGGCTGGGGGCGACTGAG | + |
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Preference number: 5 (lower is better) Translates to: WAQGPHFYKVVRSVW*SLAIGCKCWLGATE Trigger: CTCAGTCGCCCCCAGCCAGCATTTACAGCCGATGGCCAAAGACCACCACACGGACCTGACGACCTTATAGAAGTGGGGACCCTGGGCCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS CCA 90 bp | AGATGGGCCCAGGGTCCCCACTTCTATAAGGTCGTCAGGTCCGTGTaGTGGTCTTTGGCCATCGGCTGTAAATGCTGGCTGGGGGCGACT | + |
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Preference number: 5 (lower is better) Translates to: RWAQGPHFYKVVRSV*WSLAIGCKCWLGAT Trigger: AGTCGCCCCCAGCCAGCATTTACAGCCGATGGCCAAAGACCACCACACGGACCTGACGACCTTATAGAAGTGGGGACCCTGGGCCCATCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS GCA 90 bp | AAGGTCGTCAGGTCCGTGTGGTGGTCTTTGGCCATCGGCTGTAAATaGTGGCTGGGGGCGACTGAGGAGGAGCAAGATGAGGAGGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: KVVRSVWWSLAIGCK*WLGATEEEQDEEED Trigger: ATCTTCCTCCTCATCTTGCTCCTCCTCAGTCGCCCCCAGCCAGCATTTACAGCCGATGGCCAAAGACCACCACACGGACCTGACGACCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CAA 90 bp | TTTAATGACTCGCCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACTCCGTGTGGTGGTCTTaGGCCATCGGCTGTAAATGC | + |
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Preference number: 5 (lower is better) Translates to: FNDSPRFYVLSSSCHIIYSVWWS*AIGCKC Trigger: GCATTTACAGCCGATGGCCAAAGACCACCACACGGA...GTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGGCGAGTCATTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS-3UTR CAA 90 bp | CCAAGATTTTATGTTCTCAGTAGCTCCTGCCATATAATATACTTAGAGAGAGAATTGGGGTCCACATACTaGGAGTTCACCATATACGAA | + |
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Preference number: 5 (lower is better) Translates to: PRFYVLSSSCHIIYLERELGSTY*EFTIYE Trigger: TTCGTATATGGTGAACTCCAAGTATGTGGACCCCAA...TTCTCTCTCTAAGTATATTATATGGCAGGAGCTACTGAGAACATAAAATCTTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS CAA 72 bp | TGGAGCGGCGTAGTGACCGCCGGGGCCGCCTGGCTCTaGTCCGTGACCCCGCGCAGGCAGCGCCGAGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: WSGVVTAGAAWL*SVTPRRQRRAR Trigger: CCTGGCTCGGCGCTGCCTGCGCGGGGTCACGGACAAGAGCCAGGCGGCCCCGGCGGTCACTACGCCGCTCCA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS CCA 72 bp | CTCTCCTGGAGCGGCGTAGTGACCGCCGGGGCCGCCTaGCTCTTGTCCGTGACCCCGCGCAGGCAGCGCCGA | + |
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Preference number: 6 (lower is better) Translates to: LSWSGVVTAGAA*LLSVTPRRQRR Trigger: TCGGCGCTGCCTGCGCGGGGTCACGGACAAGAGCCAGGCGGCCCCGGCGGTCACTACGCCGCTCCAGGAGAG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS GCA 72 bp | CTTCATCCAGGGGTAGACCACGGCCGGCTGCTTGAGTaGCGTCCCGGAGGGCGGCTGCTTGGGGTCGGACTG | + |
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Preference number: 6 (lower is better) Translates to: LHPGVDHGRLLE*RPGGRLLGVGL Trigger: CAGTCCGACCCCAAGCAGCCGCCCTCCGGGACGGCACTCAAGCAGCCGGCCGTGGTCTACCCCTGGATGAAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS CAA 90 bp | CAGGGTCCCCACTTCTATAAGGTCGTCAGGTCCGTGTGGTGGTCTTaGGCCATCGGCTGTAAATGCTGGCTGGGGGCGACTGAGGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: QGPHFYKVVRSVWWS*AIGCKCWLGATEEE Trigger: CTCCTCCTCAGTCGCCCCCAGCCAGCATTTACAGCCGATGGCCAAAGACCACCACACGGACCTGACGACCTTATAGAAGTGGGGACCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS CCA 72 bp | TCCGTGTGGTGGTCTTTGGCCATCGGCTGTAAATGCTaGCTGGGGGCGACTGAGGAGGAGCAAGATGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: SVWWSLAIGCKC*LGATEEEQDEE Trigger: CTCCTCATCTTGCTCCTCCTCAGTCGCCCCCAGCCAGCATTTACAGCCGATGGCCAAAGACCACCACACGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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| CDS CCA 72 bp | CAGGGTCCCCACTTCTATAAGGTCGTCAGGTCCGTGTaGTGGTCTTTGGCCATCGGCTGTAAATGCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: QGPHFYKVVRSV*WSLAIGCKCWL Trigger: CAGCCAGCATTTACAGCCGATGGCCAAAGACCACCACACGGACCTGACGACCTTATAGAAGTGGGGACCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000306324.4 |
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