Pregenerated sensors for HOXD11 (Homo sapiens)
Ensembl gene IDs: ENSG00000128713Ensembl transcript IDs: ENST00000249504.7, ENST00000498438.1
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTAGGATCCGCTCGGCCAAGTCCCGGCCTCGTCCGCAGGCTGCAGTaGTCGCTGGGAGGTCCCGAGTTGACCGTGGGAAGGAATCGTGAA | + |
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Preference number: 1 (lower is better) Translates to: LGSARPSPGLVRRLQ*SLGGPELTVGRNRE Trigger: TTCACGATTCCTTCCCACGGTCAACTCGGGACCTCCCAGCGACCACTGCAGCCTGCGGACGAGGCCGGGACTTGGCCGAGCGGATCCTAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| 3UTR TCA 90 bp | CCGGCCTCGTCCGCAGGCTGCAGTGGTCGCTGGGAGGTCCCGAGTTaGCCGTGGGAAGGAATCGTGAAGTTCCACAGAGAAGAGACGTCA | + |
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Preference number: 1 (lower is better) Translates to: PASSAGCSGRWEVPS*PWEGIVKFHREETS Trigger: TGACGTCTCTTCTCTGTGGAACTTCACGATTCCTTCCCACGGTCAACTCGGGACCTCCCAGCGACCACTGCAGCCTGCGGACGAGGCCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| 3UTR CAA 90 bp | CCCGGCCTCGTCCGCAGGCTGCAGTGGTCGCTGGGAGGTCCCGAGTaGACCGTGGGAAGGAATCGTGAAGTTCCACAGAGAAGAGACGTC | + |
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Preference number: 2 (lower is better) Translates to: PGLVRRLQWSLGGPE*TVGRNREVPQRRDV Trigger: GACGTCTCTTCTCTGTGGAACTTCACGATTCCTTCCCACGGTCAACTCGGGACCTCCCAGCGACCACTGCAGCCTGCGGACGAGGCCGGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| 3UTR-3UTR CCA 90 bp | AAACTCAGAGCAAAACACCAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTGTCCGCAGGCTGCAGTaGTCGCTGGGAGGTCCCGAG | + |
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Preference number: 2 (lower is better) Translates to: KLRAKHQRLLATPNPAQLVRRLQ*SLGGPE Trigger: CTCGGGACCTCCCAGCGACCACTGCAGCCTGCGGAC...AAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTGGTGTTTTGCTCTGAGTTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| 3UTR-3UTR TCA 90 bp | CAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTCCTACAGACCCCGCCGTGCGTGGGAAGGAATCGTaGAGTTCCACAGAGAAGAGA | + |
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Preference number: 2 (lower is better) Translates to: QRLLATPNPAQLPTDPAVRGKES*SSTEKR Trigger: TCTCTTCTCTGTGGAACTTCACGATTCCTTCCCACG...CACGGCGGGGTCTGTAGGAAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| 3UTR-3UTR TCA 90 bp | AAACTCAGAGCAAAACACCAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTTGGGAGGTCCCGAGTTaGCCGTGGGAAGGAATCGTG | + |
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Preference number: 2 (lower is better) Translates to: KLRAKHQRLLATPNPAQLWEVPS*PWEGIV Trigger: CACGATTCCTTCCCACGGTCAACTCGGGACCTCCCA...AAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTGGTGTTTTGCTCTGAGTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| 3UTR-3UTR GCA 90 bp | CCTAAGGAGGCACTAAACCTCAAAGAGGAGAATTCATACAGTGTATTGAAGCTGGCCTCGTCCGCAGGCTaGAGTGGTCGCTGGGAGGTC | + |
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Preference number: 2 (lower is better) Translates to: PKEALNLKEENSYSVLKLASSAG*SGRWEV Trigger: GACCTCCCAGCGACCACTGCAGCCTGCGGACGAGGC...CAGCTTCAATACACTGTATGAATTCTCCTCTTTGAGGTTTAGTGCCTCCTTAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| 3UTR CCA 72 bp | GCTCGGCCAAGTCCCGGCCTCGTCCGCAGGCTGCAGTaGTCGCTGGGAGGTCCCGAGTTGACCGTGGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: ARPSPGLVRRLQ*SLGGPELTVGR Trigger: CCTTCCCACGGTCAACTCGGGACCTCCCAGCGACCACTGCAGCCTGCGGACGAGGCCGGGACTTGGCCGAGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| 3UTR TCA 72 bp | TCCGCAGGCTGCAGTGGTCGCTGGGAGGTCCCGAGTTaGCCGTGGGAAGGAATCGTGAAGTTCCACAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: SAGCSGRWEVPS*PWEGIVKFHRE Trigger: TTCTCTGTGGAACTTCACGATTCCTTCCCACGGTCAACTCGGGACCTCCCAGCGACCACTGCAGCCTGCGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| 3UTR-3UTR CAA 90 bp | ACCCGGCCCAACTTCCTACAGACCCCGCCGTGTCCCCACGAGGACTCGGAGAGGATTGTAACGGGACGTTaGCATTTACCATTTTCCCCT | + |
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Preference number: 3 (lower is better) Translates to: TRPNFLQTPPCPHEDSERIVTGR*HLPFSP Trigger: AGGGGAAAATGGTAAATGCAAACGTCCCGTTACAAT...CCTCTCCGAGTCCTCGTGGGGACACGGCGGGGTCTGTAGGAAGTTGGGCCGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | CCCGGCCTCGTCCGCAGGCTGCAGTGGTCGCTGGGAGGTCCCGAGTTGACCGTGGCCACCGCTGCCTTCTaGTGCCCCCTTGGGCTCCGA | + |
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Preference number: 4 (lower is better) Translates to: PGLVRRLQWSLGGPELTVATAAF*CPLGLR Trigger: TCGGAGCCCAAGGGGGCAGCAGAAGGCAGCGGTGGC...CACGGTCAACTCGGGACCTCCCAGCGACCACTGCAGCCTGCGGACGAGGCCGGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | CGGCCCAACTTCCTACAGACCCCGCCGTGTCCCCACGAGGACTCGGAGAGGGGGACCGCTGCCTTCTGCTaGCCCCTTGGGCTCCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: RPNFLQTPPCPHEDSERGTAAFC*PLGLRA Trigger: GGCTCGGAGCCCAAGGGGGCAGCAGAAGGCAGCGGT...CCCCCTCTCCGAGTCCTCGTGGGGACACGGCGGGGTCTGTAGGAAGTTGGGCCG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | CGGCCCAACTTCCTACAGACCCCGCCGTGTCCCCACGAGGACTCGGAGAGGGGGAGCCCTGTGGCAAGATaGCATTGCGGCCCACCGCGC | + |
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Preference number: 4 (lower is better) Translates to: RPNFLQTPPCPHEDSERGSPVAR*HCGPPR Trigger: GCGCGGTGGGCCGCAATGGCATCTTGCCACAGGGCT...CCCCCTCTCCGAGTCCTCGTGGGGACACGGCGGGGTCTGTAGGAAGTTGGGCCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | CAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTCCTACAGACCCCGCCGTGAGCCAGGGGTCGCCTTaGTGCAGGGACTGCCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: QRLLATPNPAQLPTDPAVSQGSP*CRDCPR Trigger: GCGGGGGCAGTCCCTGCACCAAGGCGACCCCTGGCT...CACGGCGGGGTCTGTAGGAAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR TCA 90 bp | CCAACCCGGCCCAACTTCCTACAGACCCCGCCGTGTCCCCACGAGGACTCGGAGCGTCAAAGTCGTTCATaGCTCCGCGGCGTGCGCGCC | + |
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Preference number: 4 (lower is better) Translates to: PTRPNFLQTPPCPHEDSERQSRS*LRGVRA Trigger: GGCGCGCACGCCGCGGAGTCATGAACGACTTTGACG...CTCCGAGTCCTCGTGGGGACACGGCGGGGTCTGTAGGAAGTTGGGCCGGGTTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | CGGCCCAACTTCCTACAGACCCCGCCGTGTCCCCACGAGGACTCGGAGAGGGGGCAGGTACATGCTGGCTaGGCTCTGGCCGCACTCGTC | + |
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Preference number: 4 (lower is better) Translates to: RPNFLQTPPCPHEDSERGQVHAG*ALAALV Trigger: GACGAGTGCGGCCAGAGCGCAGCCAGCATGTACCTG...CCCCCTCTCCGAGTCCTCGTGGGGACACGGCGGGGTCTGTAGGAAGTTGGGCCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | CCCCTTATTAGGATCCGCTCGGCCAAGTCCCGGCCTCGTCCGCAGGCTGCAGTGCGGGGGCCCGGGCGCTaGCTCGTAGAACTGGTCGAA | + |
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Preference number: 4 (lower is better) Translates to: PLIRIRSAKSRPRPQAAVRGPGR*LVELVE Trigger: TTCGACCAGTTCTACGAGGCAGCGCCCGGGCCCCCG...CACTGCAGCCTGCGGACGAGGCCGGGACTTGGCCGAGCGGATCCTAATAAGGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | ACCCGGCCCAACTTCCTACAGACCCCGCCGTGTCCCCACGAGGACTCGGAGAGGTTTTTCCGGGACCGCTaGGGGGCAACTGCGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TRPNFLQTPPCPHEDSERFFRDR*GATALL Trigger: CAGCAGCGCAGTTGCCCCCCAGCGGTCCCGGAAAAA...CCTCTCCGAGTCCTCGTGGGGACACGGCGGGGTCTGTAGGAAGTTGGGCCGGGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | ATTTTCCCCTTATTAGGATCCGCTCGGCCAAGTCCCGGCCTCGTCCGCAGGCTGGAAGCTCGCGTTGCATaGCCGCCTCCTCGGCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: IFPLLGSARPSPGLVRRLEARVA*PPPRPP Trigger: CGGCGGCCGAGGAGGCGGCCATGCAACGCGAGCTTC...CAGCCTGCGGACGAGGCCGGGACTTGGCCGAGCGGATCCTAATAAGGGGAAAAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR TCA 90 bp | CAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTCCTACAGACCCCGCCGTGCCCGCGCAGCCAACCTaGGCCATCGATTGCACAAGA | + |
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Preference number: 4 (lower is better) Translates to: QRLLATPNPAQLPTDPAVPAQPT*AIDCTR Trigger: TCTTGTGCAATCGATGGCTCAGGTTGGCTGCGCGGG...CACGGCGGGGTCTGTAGGAAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | ATTTTCCCCTTATTAGGATCCGCTCGGCCAAGTCCCGGCCTCGTCCGCAGGCTGGGGAGAAGCTCGCGTTaGATGGCCGCCTCCTCGGCC | + |
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Preference number: 4 (lower is better) Translates to: IFPLLGSARPSPGLVRRLGRSSR*MAASSA Trigger: GGCCGAGGAGGCGGCCATGCAACGCGAGCTTCTCCC...CAGCCTGCGGACGAGGCCGGGACTTGGCCGAGCGGATCCTAATAAGGGGAAAAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR TCA 90 bp | AAACTCAGAGCAAAACACCAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTCCGGCTCAGGCGCCTTaGAGAGCACGTCCGGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: KLRAKHQRLLATPNPAQLPAQAP*RARPAG Trigger: GCCGGCCGGACGTGCTCTTCAAGGCGCCTGAGCCGG...AAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTGGTGTTTTGCTCTGAGTTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | AAACTCAGAGCAAAACACCAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTCCTTGGTGCAGGGACTaGCCCCGCCGCCACCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: KLRAKHQRLLATPNPAQLPWCRD*PRRHQP Trigger: GGGCTGGTGGCGGCGGGGGCAGTCCCTGCACCAAGG...AAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTGGTGTTTTGCTCTGAGTTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | CCAACCCGGCCCAACTTCCTACAGACCCCGCCGTGTCCCCACGAGGACTCGGAGCGTGCGGAGCCAGGTTaGAAGAGTAGGGGAAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: PTRPNFLQTPPCPHEDSERAEPG*KSRGKS Trigger: TGACTTTCCCCTACTCTTCCAACCTGGCTCCGCACG...CTCCGAGTCCTCGTGGGGACACGGCGGGGTCTGTAGGAAGTTGGGCCGGGTTGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | CAGAGCAAAACACCAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTCCTACCGCGGTACGGCCACTTaGCGCGCTCCAGGCCGTAGT | + |
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Preference number: 4 (lower is better) Translates to: QSKTPAPSSNPQPGPTSYRGTAT*RAPGRS Trigger: ACTACGGCCTGGAGCGCGCCAAGTGGCCGTACCGCG...GTAGGAAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTGGTGTTTTGCTCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | GTGAAGTTCCACAGAGAAGAGACGTCATTAAACCCAAGGACAGTGGGCCTGCGGCACCAGCCCCGGTCCTaGGGTCGCCCTTGTCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: VKFHREETSLNPRTVGLRHQPRS*GRPCRL Trigger: CAGCCGACAAGGGCGACCCCAGGACCGGGGCTGGTG...CCGCAGGCCCACTGTCCTTGGGTTTAATGACGTCTCTTCTCTGTGGAACTTCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | AAACTCAGAGCAAAACACCAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTCTTCTGCTGCCCCCTTaGGCTCCGAGCCAGGGGTCG | + |
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Preference number: 4 (lower is better) Translates to: KLRAKHQRLLATPNPAQLLLLPP*APSQGS Trigger: CGACCCCTGGCTCGGAGCCCAAGGGGGCAGCAGAAG...AAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTGGTGTTTTGCTCTGAGTTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| 3UTR CAA 72 bp | GTCCGCAGGCTGCAGTGGTCGCTGGGAGGTCCCGAGTaGACCGTGGGAAGGAATCGTGAAGTTCCACAGAGA | + |
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Preference number: 4 (lower is better) Translates to: VRRLQWSLGGPE*TVGRNREVPQR Trigger: TCTCTGTGGAACTTCACGATTCCTTCCCACGGTCAACTCGGGACCTCCCAGCGACCACTGCAGCCTGCGGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | TTCCACAGAGAAGAGACGTCATTAAACCCAAGGACAGTGGGCCTGCGGAGAGCAGGGCAACTGCGCTGCTaGTCTTCTCGGCCCCCGCCT | + |
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Preference number: 4 (lower is better) Translates to: FHREETSLNPRTVGLRRAGQLRC*SSRPPP Trigger: AGGCGGGGGCCGAGAAGAGCAGCAGCGCAGTTGCCC...TGCTCTCCGCAGGCCCACTGTCCTTGGGTTTAATGACGTCTCTTCTCTGTGGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | GTGAAGTTCCACAGAGAAGAGACGTCATTAAACCCAAGGACAGTGGGCCTGCGGCGCACGGGCTGGACGTaGGGAGCCAGGTTGGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: VKFHREETSLNPRTVGLRRTGWT*GARLEE Trigger: CTCTTCCAACCTGGCTCCGCACGTCCAGCCCGTGCG...CCGCAGGCCCACTGTCCTTGGGTTTAATGACGTCTCTTCTCTGTGGAACTTCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | ATTTTCCCCTTATTAGGATCCGCTCGGCCAAGTCCCGGCCTCGTCCGCAGGCTGTGGCAGGACGACGGTTaGGAAAGGAACGAAGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: IFPLLGSARPSPGLVRRLWQDDG*ERNEGL Trigger: CAAGCCTTCGTTCCTTTCCCAACCGTCGTCCTGCCA...CAGCCTGCGGACGAGGCCGGGACTTGGCCGAGCGGATCCTAATAAGGGGAAAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | AGGAATCGTGAAGTTCCACAGAGAAGAGACGTCATTAAACCCAAGGACAGTGGGCCGCGCTGTAGAAGTTaGAGGCGGCGCCCGCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: RNREVPQRRDVIKPKDSGPRCRS*RRRPRG Trigger: GCCCCGCGGGCGCCGCCTCCAACTTCTACAGCGCGG...CCCACTGTCCTTGGGTTTAATGACGTCTCTTCTCTGTGGAACTTCACGATTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | ACCGTGGGAAGGAATCGTGAAGTTCCACAGAGAAGAGACGTCATTAAACCCAAGCATGACTCCGCGGCGTaGGCGCCAGCGAGCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: TVGRNREVPQRRDVIKPKHDSAA*APASLW Trigger: CCAGAGGCTCGCTGGCGCGCACGCCGCGGAGTCATG...CTTGGGTTTAATGACGTCTCTTCTCTGTGGAACTTCACGATTCCTTCCCACGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | CCTAAGGAGGCACTAAACCTCAAAGAGGAGAATTCATACAGTGTATTGAAGCTGGTCGCCCTTGTCGGCTaGGCCCTCGGGCTGTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: PKEALNLKEENSYSVLKLVALVG*ALGLWR Trigger: CCGCCACAGCCCGAGGGCGCAGCCGACAAGGGCGAC...CAGCTTCAATACACTGTATGAATTCTCCTCTTTGAGGTTTAGTGCCTCCTTAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | AGGAATCGTGAAGTTCCACAGAGAAGAGACGTCATTAAACCCAAGGACAGTGGGCCGGCAGGTACATGCTaGCTGCGCTCTGGCCGCACT | + |
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Preference number: 4 (lower is better) Translates to: RNREVPQRRDVIKPKDSGPAGTC*LRSGRT Trigger: AGTGCGGCCAGAGCGCAGCCAGCATGTACCTGCCGG...CCCACTGTCCTTGGGTTTAATGACGTCTCTTCTCTGTGGAACTTCACGATTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | GGGGAACGACAGCACACTGGCGGTAAAATTGTAACGGGACGTTTGCATTTACCAATGCTGGCTGCGCTCTaGCCGCACTCGTCAAAGTCG | + |
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Preference number: 4 (lower is better) Translates to: GERQHTGGKIVTGRLHLPMLAAL*PHSSKS Trigger: CGACTTTGACGAGTGCGGCCAGAGCGCAGCCAGCAT...TGGTAAATGCAAACGTCCCGTTACAATTTTACCGCCAGTGTGCTGTCGTTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | GAAGAGGAAGGAAGGGATCTCTTAAAACTCAGAGCAAAACACCAGCGCCTTCTAACTTCGCGCACGGGCTaGACGTGCGGAGCCAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: EEEGRDLLKLRAKHQRLLTSRTG*TCGARL Trigger: CAACCTGGCTCCGCACGTCCAGCCCGTGCGCGAAGT...TAGAAGGCGCTGGTGTTTTGCTCTGAGTTTTAAGAGATCCCTTCCTTCCTCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR GCA 90 bp | TTCACCGAAGAGGAAGGAAGGGATCTCTTAAAACTCAGAGCAAAACACCAGCGCGTGGCAAGATGCCATTaGGGCCCACCGCGCTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: FTEEEGRDLLKLRAKHQRVARCH*GPPRCR Trigger: TCTACAGCGCGGTGGGCCGCAATGGCATCTTGCCAC...GCGCTGGTGTTTTGCTCTGAGTTTTAAGAGATCCCTTCCTTCCTCTTCGGTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | GAAGAGGAAGGAAGGGATCTCTTAAAACTCAGAGCAAAACACCAGCGCCTTCTACTGGTCGAAGCCCTGTaGCAAGATGCCATTGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: EEEGRDLLKLRAKHQRLLLVEAL*QDAIAA Trigger: GGCCGCAATGGCATCTTGCCACAGGGCTTCGACCAG...TAGAAGGCGCTGGTGTTTTGCTCTGAGTTTTAAGAGATCCCTTCCTTCCTCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | GAAGTTCCACAGAGAAGAGACGTCATTAAACCCAAGGACAGTGGGCCTGCGGAGCGATTTTCAGTTGCATaGGTTCTGGCCACTAAAATA | + |
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Preference number: 4 (lower is better) Translates to: EVPQRRDVIKPKDSGPAERFSVA*VLATKI Trigger: TATTTTAGTGGCCAGAACCCATGCAACTGAAAATCG...CTCCGCAGGCCCACTGTCCTTGGGTTTAATGACGTCTCTTCTCTGTGGAACTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CCA 90 bp | CAAAGAGGAGAATTCATACAGTGTATTGAAGCTGTAACCTCCATTTTACTAGAACAGTTGCATGGGTTCTaGCCACTAAAATATCCTAAG | + |
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Preference number: 4 (lower is better) Translates to: QRGEFIQCIEAVTSILLEQLHGF*PLKYPK Trigger: CTTAGGATATTTTAGTGGCCAGAACCCATGCAACTG...TTCTAGTAAAATGGAGGTTACAGCTTCAATACACTGTATGAATTCTCCTCTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CAA 90 bp | ACCCGGCCCAACTTCCTACAGACCCCGCCGTGTCCCCACGAGGACTCGGAGAGGGTCCTGGGGTCGCCCTaGTCGGCTGCGCCCTCGGGC | + |
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Preference number: 5 (lower is better) Translates to: TRPNFLQTPPCPHEDSERVLGSP*SAAPSG Trigger: GCCCGAGGGCGCAGCCGACAAGGGCGACCCCAGGAC...CCTCTCCGAGTCCTCGTGGGGACACGGCGGGGTCTGTAGGAAGTTGGGCCGGGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS TCA 90 bp | GGTACATGCTGGCTGCGCTCTGGCCGCACTCGTCAAAGTCGTTCATaGCTCCGCGGCGTGCGCGCCAGCGAGCCTCTGGCCGCTCCCCGC | + |
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Preference number: 5 (lower is better) Translates to: GTCWLRSGRTRQSRS*LRGVRASEPLAAPR Trigger: GCGGGGAGCGGCCAGAGGCTCGCTGGCGCGCACGCCGCGGAGTCATGAACGACTTTGACGAGTGCGGCCAGAGCGCAGCCAGCATGTACC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CAA 90 bp | ACCCGGCCCAACTTCCTACAGACCCCGCCGTGTCCCCACGAGGACTCGGAGAGGCCTTCTGCTGCCCCCTaGGGCTCCGAGCCAGGGGTC | + |
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Preference number: 5 (lower is better) Translates to: TRPNFLQTPPCPHEDSERPSAAP*GSEPGV Trigger: GACCCCTGGCTCGGAGCCCAAGGGGGCAGCAGAAGG...CCTCTCCGAGTCCTCGTGGGGACACGGCGGGGTCTGTAGGAAGTTGGGCCGGGT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS GCA 90 bp | AGACGGGGCCACATAGTAGGCGCAGCCCGGCAGGTACATGCTGGCTaGGCTCTGGCCGCACTCGTCAAAGTCGTTCATGACTCCGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: RRGHIVGAARQVHAG*ALAALVKVVHDSAA Trigger: CGCCGCGGAGTCATGAACGACTTTGACGAGTGCGGCCAGAGCGCAGCCAGCATGTACCTGCCGGGCTGCGCCTACTATGTGGCCCCGTCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CAA 90 bp | CGGCCCAACTTCCTACAGACCCCGCCGTGTCCCCACGAGGACTCGGAGAGGGGGCTGGCAGGACGACGGTaGGGAAAGGAACGAAGGCTT | + |
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Preference number: 5 (lower is better) Translates to: RPNFLQTPPCPHEDSERGLAGRR*GKERRL Trigger: AAGCCTTCGTTCCTTTCCCAACCGTCGTCCTGCCAG...CCCCCTCTCCGAGTCCTCGTGGGGACACGGCGGGGTCTGTAGGAAGTTGGGCCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CAA 90 bp | AGAGAAGAGACGTCATTAAACCCAAGGACAGTGGGCCTGCGGAGAGCAGGCTGGGAGCCAGGGGTCGCCTaGGTGCAGGGACTGCCCCCG | + |
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Preference number: 5 (lower is better) Translates to: REETSLNPRTVGLRRAGWEPGVA*VQGLPP Trigger: CGGGGGCAGTCCCTGCACCAAGGCGACCCCTGGCTC...CCAGCCTGCTCTCCGCAGGCCCACTGTCCTTGGGTTTAATGACGTCTCTTCTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CAA 90 bp | CAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTCCTACAGACCCCGCCGTGGAAAGGAACGAAGGCTaGCTAGCGAAGTCAGACGGG | + |
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Preference number: 5 (lower is better) Translates to: QRLLATPNPAQLPTDPAVERNEG*LAKSDG Trigger: CCCGTCTGACTTCGCTAGCAAGCCTTCGTTCCTTTC...CACGGCGGGGTCTGTAGGAAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CAA 90 bp | GTGAAGTTCCACAGAGAAGAGACGTCATTAAACCCAAGGACAGTGGGCCTGCGGCGGGAGAAGCTCGCGTaGCATGGCCGCCTCCTCGGC | + |
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Preference number: 5 (lower is better) Translates to: VKFHREETSLNPRTVGLRREKLA*HGRLLG Trigger: GCCGAGGAGGCGGCCATGCAACGCGAGCTTCTCCCG...CCGCAGGCCCACTGTCCTTGGGTTTAATGACGTCTCTTCTCTGTGGAACTTCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CAA 90 bp | CCCGGCCTCGTCCGCAGGCTGCAGTGGTCGCTGGGAGGTCCCGAGTTGACCGTGATTGTAACGGGACGTTaGCATTTACCATTTTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: PGLVRRLQWSLGGPELTVIVTGR*HLPFSP Trigger: AGGGGAAAATGGTAAATGCAAACGTCCCGTTACAAT...CACGGTCAACTCGGGACCTCCCAGCGACCACTGCAGCCTGCGGACGAGGCCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CAA 90 bp | GAAGAGGAAGGAAGGGATCTCTTAAAACTCAGAGCAAAACACCAGCGCCTTCTAACCGGCTCAGGCGCCTaGAAGAGCACGTCCGGCCGG | + |
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Preference number: 5 (lower is better) Translates to: EEEGRDLLKLRAKHQRLLTGSGA*KSTSGR Trigger: CCGGCCGGACGTGCTCTTCAAGGCGCCTGAGCCGGT...TAGAAGGCGCTGGTGTTTTGCTCTGAGTTTTAAGAGATCCCTTCCTTCCTCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CAA 90 bp | AAACTCAGAGCAAAACACCAGCGCCTTCTAGCAACCCCCAACCCGGCCCAACTTTCATTCGATTTTCAGTaGCATGGGTTCTGGCCACTA | + |
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Preference number: 5 (lower is better) Translates to: KLRAKHQRLLATPNPAQLSFDFQ*HGFWPL Trigger: TAGTGGCCAGAACCCATGCAACTGAAAATCGAATGA...AAGTTGGGCCGGGTTGGGGGTTGCTAGAAGGCGCTGGTGTTTTGCTCTGAGTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS-3UTR CAA 90 bp | TTCACCGAAGAGGAAGGAAGGGATCTCTTAAAACTCAGAGCAAAACACCAGCGCGAGCATCCGAGAGAGTaGAAGTCTTTTCTCTTTGTT | + |
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Preference number: 5 (lower is better) Translates to: FTEEEGRDLLKLRAKHQREHPRE*KSFLFV Trigger: AACAAAGAGAAAAGACTTCAACTCTCTCGGATGCTC...GCGCTGGTGTTTTGCTCTGAGTTTTAAGAGATCCCTTCCTTCCTCTTCGGTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS CCA 72 bp | CGCTGCCGCCGCCGCCGCCGCCGCGGTACGGCCACTTaGCGCGCTCCAGGCCGTAGTCGCGGAAGGCCACTT | + |
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Preference number: 6 (lower is better) Translates to: RCRRRRRRGTAT*RAPGRSRGRPL Trigger: AAGTGGCCTTCCGCGACTACGGCCTGGAGCGCGCCAAGTGGCCGTACCGCGGCGGCGGCGGCGGCGGCAGCG 78% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS CCA 72 bp | GCAAGATGCCATTGCGGCCCACCGCGCTGTAGAAGTTaGAGGCGGCGCCCGCGGGGCCGTGCGGCGGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: ARCHCGPPRCRS*RRRPRGRAAAP Trigger: CGGGGCCGCCGCACGGCCCCGCGGGCGCCGCCTCCAACTTCTACAGCGCGGTGGGCCGCAATGGCATCTTGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS CCA 72 bp | CCTCGCCGTCGCCACCGCTGCCTTCTGCTGCCCCCTTaGGCTCCGAGCCAGGGGTCGCCTTGGTGCAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: PRRRHRCLLLPP*APSQGSPWCRD Trigger: GTCCCTGCACCAAGGCGACCCCTGGCTCGGAGCCCAAGGGGGCAGCAGAAGGCAGCGGTGGCGACGGCGAGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS CAA 72 bp | CCCTCGCCGTCGCCACCGCTGCCTTCTGCTGCCCCCTaGGGCTCCGAGCCAGGGGTCGCCTTGGTGCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: PSPSPPLPSAAP*GSEPGVALVQG Trigger: TCCCTGCACCAAGGCGACCCCTGGCTCGGAGCCCAAGGGGGCAGCAGAAGGCAGCGGTGGCGACGGCGAGGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS TCA 72 bp | TGGCTGCGCTCTGGCCGCACTCGTCAAAGTCGTTCATaGCTCCGCGGCGTGCGCGCCAGCGAGCCTCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: WLRSGRTRQSRS*LRGVRASEPLA Trigger: GGCCAGAGGCTCGCTGGCGCGCACGCCGCGGAGTCATGAACGACTTTGACGAGTGCGGCCAGAGCGCAGCCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS CAA 72 bp | GGGCAACGTGAAGACCCCGACTCTGTGGCCTTGTCCTaGCCTGCGCGGCCCCACCCGAAACGCAGGGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: GQREDPDSVALS*PARPHPKRRER Trigger: GCGCTCCCTGCGTTTCGGGTGGGGCCGCGCAGGCAAGGACAAGGCCACAGAGTCGGGGTCTTCACGTTGCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000498438.1 |
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| CDS GCA 72 bp | GGCAACGTGAAGACCCCGACTCTGTGGCCTTGTCCTTaGCTGCGCGGCCCCACCCGAAACGCAGGGAGCGCA | + |
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Preference number: 6 (lower is better) Translates to: GNVKTPTLWPCP*LRGPTRNAGSA Trigger: TGCGCTCCCTGCGTTTCGGGTGGGGCCGCGCAGGCAAGGACAAGGCCACAGAGTCGGGGTCTTCACGTTGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000498438.1 |
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| CDS GCA 72 bp | ACGGGGCCACATAGTAGGCGCAGCCCGGCAGGTACATaGTGGCTGCGCTCTGGCCGCACTCGTCAAAGTCGT | + |
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Preference number: 6 (lower is better) Translates to: TGPHSRRSPAGT*WLRSGRTRQSR Trigger: ACGACTTTGACGAGTGCGGCCAGAGCGCAGCCAGCATGTACCTGCCGGGCTGCGCCTACTATGTGGCCCCGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS CCA 72 bp | GGGCCACATAGTAGGCGCAGCCCGGCAGGTACATGCTaGCTGCGCTCTGGCCGCACTCGTCAAAGTCGTTCA | + |
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Preference number: 6 (lower is better) Translates to: GPHSRRSPAGTC*LRSGRTRQSRS Trigger: TGAACGACTTTGACGAGTGCGGCCAGAGCGCAGCCAGCATGTACCTGCCGGGCTGCGCCTACTATGTGGCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS GCA 72 bp | CACATAGTAGGCGCAGCCCGGCAGGTACATGCTGGCTaGGCTCTGGCCGCACTCGTCAAAGTCGTTCATGAC | + |
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Preference number: 6 (lower is better) Translates to: HIVGAARQVHAG*ALAALVKVVHD Trigger: GTCATGAACGACTTTGACGAGTGCGGCCAGAGCGCAGCCAGCATGTACCTGCCGGGCTGCGCCTACTATGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS CAA 72 bp | GGAAGAGTAGGGGAAAGTCATCTGGCAGGACGACGGTaGGGAAAGGAACGAAGGCTTGCTAGCGAAGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: GRVGESHLAGRR*GKERRLASEVR Trigger: TCTGACTTCGCTAGCAAGCCTTCGTTCCTTTCCCAACCGTCGTCCTGCCAGATGACTTTCCCCTACTCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249504.7 |
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| CDS GCA 72 bp | CTGACTGGGGAAGGGATTCTGAGTCATTTCATTTATTaGCACTACAGTTCTGCAAGAAAGCTTTTCCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: LTGEGILSHFIY*HYSSARKLFLP Trigger: AGGGAGGAAAAGCTTTCTTGCAGAACTGTAGTGGCAATAAATGAAATGACTCAGAATCCCTTCCCCAGTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000498438.1 |
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