Pregenerated sensors for HOXD1 (Homo sapiens)
Ensembl gene IDs: ENSG00000128645Ensembl transcript IDs: ENST00000331462.6
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTaGCAGAACTCAGCAACTAATGGTCTGCCACTCTGCAACGCGAAT | + |
|
Preference number: 1 (lower is better) Translates to: PEKLWAGALLSTSEC*QNSATNGLPLCNAN Trigger: ATTCGCGTTGCAGAGTGGCAGACCATTAGTTGCTGAGTTCTGTCAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| 3UTR-3UTR CCA 90 bp | CATAACCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTGGACATATAGTCGGGATGGGGGTCGCCTaGGACTTCTGCAGGCCACAG | + |
|
Preference number: 2 (lower is better) Translates to: HNQTSGLQDSQLISGHIVGMGVA*DFCRPQ Trigger: CTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCC...GACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGGTTATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| 3UTR-3UTR GCA 90 bp | CCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTGGACATATAGTCTGGAAGTCGCCTGGGACTTCTaGAGGCCACAGTTTTTCGGC | + |
|
Preference number: 2 (lower is better) Translates to: PNKWLTRQSINIWTYSLEVAWDF*RPQFFG Trigger: GCCGAAAAACTGTGGCCTGCAGAAGTCCCAGGCGAC...TTCCAGACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| 3UTR-3UTR GCA 90 bp | AAATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCCAGCAACTAATGGTCTaGCACTCTGCAACGCGAATT | + |
|
Preference number: 2 (lower is better) Translates to: KLKPEKLWAGALLSTSECQQLMV*HSATRI Trigger: AATTCGCGTTGCAGAGTGGCAGACCATTAGTTGCTG...GCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| 3UTR TCA 72 bp | TCTGCCACTCTGCAACGCGAATTGCACATGACTAAGTaGGGCAAAGATAGCAGCGGAGCTGGGCTGGCAGCT | + |
|
Preference number: 3 (lower is better) Translates to: SATLQRELHMTK*GKDSSGAGLAA Trigger: AGCTGCCAGCCCAGCTCCGCTGCTATCTTTGCCTCACTTAGTCATGTGCAATTCGCGTTGCAGAGTGGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| 3UTR TCA 72 bp | CTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTaGCAGAACTCAGCAACTAATGGTCTGCCACTCTGC | + |
|
Preference number: 3 (lower is better) Translates to: LWAGALLSTSEC*QNSATNGLPLC Trigger: GCAGAGTGGCAGACCATTAGTTGCTGAGTTCTGTCAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| 3UTR CCA 72 bp | CCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTaGACATATAGTCTGGAACTCGGAAGCCAACTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: PNKWLTRQSINI*TYSLELGSQLK Trigger: CTTTAGTTGGCTTCCGAGTTCCAGACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTAGGCCCCCTCCAGGGTaGACTGCGCGTACTGGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: LLSLDRDGGRLGLLQATVRPPPG*TARTGA Trigger: CGCCCCAGTACGCGCAGTGCACCCTGGAGGGGGCCT...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTCTTGGGGTAGGTGCCTaGGGCCGGGGATGCGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LLSLDRDGGRLGLLQATVLGVGA*GRGCGL Trigger: CAGACCGCATCCCCGGCCCCAGGCACCTACCCCAAG...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTGGGATGGGGGTCGCCTaGGACTTCTGCAGGCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: LLSLDRDGGRLGLLQATVGMGVA*DFCRPQ Trigger: CTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCC...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTCGACCCCGCCGCTGCTaGTGCATGACACGTACTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LLSLDRDGGRLGLLQATVRPRRC*CMTRTP Trigger: TGGAGTACGTGTCATGCAGCAGCAGCGGCGGGGTCG...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTCGTCGGCTGACGCTTTaGGACAAGCCGGAAAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: LLSLDRDGGRLGLLQATVRRLTL*DKPEKG Trigger: GCCCTTTTCCGGCTTGTCTCAAAGCGTCAGCCGACG...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTAGAAGACGGCCGAGGTaGCGTAGTGGACGTGAGACC | + |
|
Preference number: 4 (lower is better) Translates to: LLSLDRDGGRLGLLQATVRRRPR*RSGRET Trigger: GGTCTCACGTCCACTACGCCACCTCGGCCGTCTTCT...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | GCTGGGCTGGCAGCTGGGCACCTTTTCCCTGATAAGACACAAATCATAACCAAATCCACTCGAACGTGCTaGAGGCGGCAGGGAGGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: AGLAAGHLFPDKTQIITKSTRTC*RRQGGR Trigger: CCGGCCTCCCTGCCGCCTTCAGCACGTTCGAGTGGA...TTTGGTTATGATTTGTGTCTTATCAGGGAAAAGGTGCCCAGCTGCCAGCCCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTTCAGGTGCAAGCAGTTaGCTATCTCGATGCGCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: LLSLDRDGGRLGLLQATVSGASS*LSRCAG Trigger: CCCGGCGCATCGAGATAGCCAACTGCTTGCACCTGA...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTCCACAGGAATGGCCGTaGCCAGAAGCCCTTCTCGTT | + |
|
Preference number: 4 (lower is better) Translates to: LLSLDRDGGRLGLLQATVPQEWP*PEALLV Trigger: AACGAGAAGGGCTTCTGGCCACGGCCATTCCTGTGG...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | ATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTGAGGACTGCCGCCGTCTaGGCCGCTCCGCCAGCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: IKTRKTLGRCSSEHIRVLRTAAV*AAPPAL Trigger: GAGGGCTGGCGGAGCGGCGCAGACGGCGGCAGTCCT...CAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | ATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTGGAGCCGGGCAGAGGCTaGGCAGGACTGCCGCCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: IKTRKTLGRCSSEHIRVLEPGRG*AGLPPS Trigger: AGACGGCGGCAGTCCTGCTCAGCCTCTGCCCGGCTC...CAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTAGTTGGCTATCTCGATaGGCCGGGCTCGAGTTAAGT | + |
|
Preference number: 4 (lower is better) Translates to: LLSLDRDGGRLGLLQATVSWLSR*AGLELS Trigger: ACTTAACTCGAGCCCGGCGCATCGAGATAGCCAACT...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTTGCGTGTCATTCAGGTaGAAGCAGTTGGCTATCTCG | + |
|
Preference number: 4 (lower is better) Translates to: LLSLDRDGGRLGLLQATVCVSFR*KQLAIS Trigger: CGAGATAGCCAACTGCTTGCACCTGAATGACACGCA...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | GCTGGGCTGGCAGCTGGGCACCTTTTCCCTGATAAGACACAAATCATAACCAAATGGAAAGCACCAGGGTaGCCGTCGGCTGACGCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: AGLAAGHLFPDKTQIITKWKAPG*PSADAL Trigger: CAAAGCGTCAGCCGACGGCCACCCTGGTGCTTTCCA...TTTGGTTATGATTTGTGTCTTATCAGGGAAAAGGTGCCCAGCTGCCAGCCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | AGATCACTGAAGCAGCTTAGCTACATCAAGGAGACCCTAACTAGCTTTGGTCATAATCCACCTGGCCGCTaGGGAGGAAAGAGCCGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: RSLKQLSYIKETLTSFGHNPPGR*GGKSRR Trigger: GCGGCGGCTCTTTCCTCCTCAGCGGCCAGGTGGATT...ATGACCAAAGCTAGTTAGGGTCTCCTTGATGTAGCTAAGCTGCTTCAGTGATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | AGATCACTGAAGCAGCTTAGCTACATCAAGGAGACCCTAACTAGCTTTGGTCATCGCCGACCCCGCCGCTaGTGCTGCATGACACGTACT | + |
|
Preference number: 4 (lower is better) Translates to: RSLKQLSYIKETLTSFGHRRPRR*CCMTRT Trigger: AGTACGTGTCATGCAGCAGCAGCGGCGGGGTCGGCG...ATGACCAAAGCTAGTTAGGGTCTCCTTGATGTAGCTAAGCTGCTTCAGTGATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | AAATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCGCCTGGGGCCGGGGATaGGGTCTGGAAAGCACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: KLKPEKLWAGALLSTSECAWGRG*GLESTR Trigger: CCTGGTGCTTTCCAGACCGCATCCCCGGCCCCAGGC...GCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAATTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | AAATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCCGGGAGAGACGGACTTaGGGTAGGTGCCTGGGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: KLKPEKLWAGALLSTSECRERRT*GRCLGP Trigger: CGGCCCCAGGCACCTACCCCAAGTCCGTCTCTCCCG...GCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAATTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | AGATCACTGAAGCAGCTTAGCTACATCAAGGAGACCCTAACTAGCTTTGGTCATGCAGCGGAGCTGGGCTaGCAGCTGGGCACCTTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: RSLKQLSYIKETLTSFGHAAELG*QLGTFS Trigger: GGAAAAGGTGCCCAGCTGCCAGCCCAGCTCCGCTGC...ATGACCAAAGCTAGTTAGGGTCTCCTTGATGTAGCTAAGCTGCTTCAGTGATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | CCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTGGACATATAGTCTGGAAAGAGGGAAGGCGGGCTaGAGAGCCACGGGCCGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: PNKWLTRQSINIWTYSLERGKAG*RATGRA Trigger: CGCCCGGCCCGTGGCTCTGCAGCCCGCCTTCCCTCT...TTCCAGACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | ATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTGGCCGCTGCTGCTGCATaGCACGTACTCCAGGTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: IKTRKTLGRCSSEHIRVLAAAAA*HVLQVG Trigger: TCCTACCTGGAGTACGTGTCATGCAGCAGCAGCGGC...CAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | CACCTTTTCCCTGATAAGACACAAATCATAACCAAACAAGTGGCTTACAAGACAACTTGGGTGCCAAGCTaGGCACGTCGCCGCCGACCC | + |
|
Preference number: 4 (lower is better) Translates to: HLFPDKTQIITKQVAYKTTWVPS*ARRRRP Trigger: GGGTCGGCGGCGACGTGCTCAGCTTGGCACCCAAGT...TGTCTTGTAAGCCACTTGTTTGGTTATGATTTGTGTCTTATCAGGGAAAAGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | CCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTGGACATATAGTCTGGAACCAGGGGCAGACAGCTaGCGAAGGCGCCGTCGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: PNKWLTRQSINIWTYSLEPGADS*RRRRRR Trigger: ACGGCGACGGCGCCTTCGTCAGCTGTCTGCCCCTGG...TTCCAGACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | CATAACCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTGGACATATAGTCCCCTCCAGGGTGCACTaGGCGTACTGGGGCGCGGCC | + |
|
Preference number: 4 (lower is better) Translates to: HNQTSGLQDSQLISGHIVPSRVH*AYWGAA Trigger: GGCCGCGCCCCAGTACGCGCAGTGCACCCTGGAGGG...GACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGGTTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | CATAACCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTGGACATATAGTCGTGCACTGCGCGTACTaGGGCGCGGCCGGAGGCGGT | + |
|
Preference number: 4 (lower is better) Translates to: HNQTSGLQDSQLISGHIVVHCAY*GAAGGG Trigger: ACCGCCTCCGGCCGCGCCCCAGTACGCGCAGTGCAC...GACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGGTTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | AGATCACTGAAGCAGCTTAGCTACATCAAGGAGACCCTAACTAGCTTTGGTCATGTCGCCTGGGACTTCTaGAGGCCACAGTTTTTCGGC | + |
|
Preference number: 4 (lower is better) Translates to: RSLKQLSYIKETLTSFGHVAWDF*RPQFFG Trigger: GCCGAAAAACTGTGGCCTGCAGAAGTCCCAGGCGAC...ATGACCAAAGCTAGTTAGGGTCTCCTTGATGTAGCTAAGCTGCTTCAGTGATCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | AGATCACTGAAGCAGCTTAGCTACATCAAGGAGACCCTAACTAGCTTTGGTCATCCAGGTAGGAGCTCATaGTTCGGGCCCCACCTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RSLKQLSYIKETLTSFGHPGRSS*FGPHLS Trigger: AGAAAGGTGGGGCCCGAACCATGAGCTCCTACCTGG...ATGACCAAAGCTAGTTAGGGTCTCCTTGATGTAGCTAAGCTGCTTCAGTGATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | CCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTGGACATATAGTCTGGAAAGGGTGGCCGTCGGCTaGCGCTTTGAGACAAGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: PNKWLTRQSINIWTYSLERVAVG*RFETSR Trigger: CCGGCTTGTCTCAAAGCGTCAGCCGACGGCCACCCT...TTCCAGACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | ATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTGTCAGTTGCTTGGTGCTaGAATTCGTGCGGATCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: IKTRKTLGRCSSEHIRVLSVAWC*NSCGSR Trigger: GCGCGATCCGCACGAATTTCAGCACCAAGCAACTGA...CAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | AAATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCGGGCAGGTGCTCTTCTaGGCACATCAGAGTGCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: KLKPEKLWAGALLSTSECGQVLF*AHQSAD Trigger: GTCAGCACTCTGATGTGCTCAGAAGAGCACCTGCCC...GCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | CACCTTTTCCCTGATAAGACACAAATCATAACCAAACAAGTGGCTTACAAGACACCCCGCCGCTGCTGCTaGATGACACGTACTCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: HLFPDKTQIITKQVAYKTPRRCC*MTRTPG Trigger: ACCTGGAGTACGTGTCATGCAGCAGCAGCGGCGGGG...TGTCTTGTAAGCCACTTGTTTGGTTATGATTTGTGTCTTATCAGGGAAAAGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | CATAACCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTGGACATATAGTCGCCGGGGATGCGGTCTaGAAAGCACCAGGGTGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: HNQTSGLQDSQLISGHIVAGDAV*KAPGWP Trigger: CGGCCACCCTGGTGCTTTCCAGACCGCATCCCCGGC...GACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGGTTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | CATAACCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTGGACATATAGTCGCGGCAGAACTTGGGTaGCAAGCTGAGCACGTCGCC | + |
|
Preference number: 4 (lower is better) Translates to: HNQTSGLQDSQLISGHIVAAELG*QAEHVA Trigger: GGCGACGTGCTCAGCTTGGCACCCAAGTTCTGCCGC...GACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGGTTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | AGATCACTGAAGCAGCTTAGCTACATCAAGGAGACCCTAACTAGCTTTGGTCATTTGCACATGACTAAGTaGGGCAAAGATAGCAGCGGA | + |
|
Preference number: 4 (lower is better) Translates to: RSLKQLSYIKETLTSFGHLHMTK*GKDSSG Trigger: TCCGCTGCTATCTTTGCCTCACTTAGTCATGTGCAA...ATGACCAAAGCTAGTTAGGGTCTCCTTGATGTAGCTAAGCTGCTTCAGTGATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | AGATCACTGAAGCAGCTTAGCTACATCAAGGAGACCCTAACTAGCTTTGGTCATCAGCAACTAATGGTCTaGCACTCTGCAACGCGAATT | + |
|
Preference number: 4 (lower is better) Translates to: RSLKQLSYIKETLTSFGHQQLMV*HSATRI Trigger: AATTCGCGTTGCAGAGTGGCAGACCATTAGTTGCTG...ATGACCAAAGCTAGTTAGGGTCTCCTTGATGTAGCTAAGCTGCTTCAGTGATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | AGATCACTGAAGCAGCTTAGCTACATCAAGGAGACCCTAACTAGCTTTGGTCATACTGGAGTGCAAATGTaGAGATCACTGAAGCAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: RSLKQLSYIKETLTSFGHTGVQM*RSLKQL Trigger: AAGCTGCTTCAGTGATCTTCACATTTGCACTCCAGT...ATGACCAAAGCTAGTTAGGGTCTCCTTGATGTAGCTAAGCTGCTTCAGTGATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CCA 90 bp | GCTGGGCTGGCAGCTGGGCACCTTTTCCCTGATAAGACACAAATCATAACCAAATCTTTACCCATTCTGTaGATTTGTTCATCTAGTAAC | + |
|
Preference number: 4 (lower is better) Translates to: AGLAAGHLFPDKTQIITKSLPIL*ICSSSN Trigger: GTTACTAGATGAACAAATCCACAGAATGGGTAAAGA...TTTGGTTATGATTTGTGTCTTATCAGGGAAAAGGTGCCCAGCTGCCAGCCCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | ATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTGGTCATCTCAAAAAGCTaGATATATGTAGCCTTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: IKTRKTLGRCSSEHIRVLVISKS*IYVALS Trigger: GGACAAGGCTACATATATTCAGCTTTTTGAGATGAC...CAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | ATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTGAAATGTGAAGATCACTaGAGCAGCTTAGCTACATCA | + |
|
Preference number: 4 (lower is better) Translates to: IKTRKTLGRCSSEHIRVLKCEDH*SSLATS Trigger: TGATGTAGCTAAGCTGCTTCAGTGATCTTCACATTT...CAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR TCA 90 bp | CACCTTTTCCCTGATAAGACACAAATCATAACCAAACAAGTGGCTTACAAGACAAGCACATCAGAGTGCTaGCAGAACTCAGCAACTAAT | + |
|
Preference number: 4 (lower is better) Translates to: HLFPDKTQIITKQVAYKTSTSEC*QNSATN Trigger: ATTAGTTGCTGAGTTCTGTCAGCACTCTGATGTGCT...TGTCTTGTAAGCCACTTGTTTGGTTATGATTTGTGTCTTATCAGGGAAAAGGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR GCA 90 bp | CATAACCAAACAAGTGGCTTACAAGACAGTCAATTAATATCTGGACATATAGTCAACCAGATTTTGACTTaGGTGTCATTCAGGTGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: HNQTSGLQDSQLISGHIVNQILT*VSFRCK Trigger: CTTGCACCTGAATGACACGCAAGTCAAAATCTGGTT...GACTATATGTCCAGATATTAATTGACTGTCTTGTAAGCCACTTGTTTGGTTATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS GCA 90 bp | CTGCCGCGGCAGGTGCGGCACCAGGTTCGTAGGCCCCCTCCAGGGTaGACTGCGCGTACTGGGGCGCGGCCGGAGGCGGTACGGACGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LPRQVRHQVRRPPPG*TARTGARPEAVRTA Trigger: GGCCGTCCGTACCGCCTCCGGCCGCGCCCCAGTACGCGCAGTGCACCCTGGAGGGGGCCTACGAACCTGGTGCCGCACCTGCCGCGGCAG 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS GCA 90 bp | CAGGCCGGGGCCGGAGTACGGAGCCGGGCAGAGGCTGAGCAGGACTaGCGCCGTCTGCGCCGCTCCGCCAGCCCTCTCTACCCGAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: QAGAGVRSRAEAEQD*RRLRRSASPLYPSC Trigger: GCAGCTCGGGTAGAGAGGGCTGGCGGAGCGGCGCAGACGGCGGCAGTCCTGCTCAGCCTCTGCCCGGCTCCGTACTCCGGCCCCGGCCTG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS GCA 90 bp | GGGCTGCAGAGCCACGGGCCGGGCGTCGGAGCGGCAGAACTTGGGTaGCAAGCTGAGCACGTCGCCGCCGACCCCGCCGCTGCTGCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: GLQSHGPGVGAAELG*QAEHVAADPAAAAA Trigger: TGCAGCAGCAGCGGCGGGGTCGGCGGCGACGTGCTCAGCTTGGCACCCAAGTTCTGCCGCTCCGACGCCCGGCCCGTGGCTCTGCAGCCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS GCA 90 bp | CAGCTGACGAAGGCGCCGTCGCCGTTGCCCAGAGGGAAGGCGGGCTaGAGAGCCACGGGCCGGGCGTCGGAGCGGCAGAACTTGGGTGCC | + |
|
Preference number: 5 (lower is better) Translates to: QLTKAPSPLPRGKAG*RATGRASERQNLGA Trigger: GGCACCCAAGTTCTGCCGCTCCGACGCCCGGCCCGTGGCTCTGCAGCCCGCCTTCCCTCTGGGCAACGGCGACGGCGCCTTCGTCAGCTG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS CCA 90 bp | GGCAGGGAGGCCGGAGGCGGGAGAGACGGACTTGGGGTAGGTGCCTaGGGCCGGGGATGCGGTCTGGAAAGCACCAGGGTGGCCGTCGGC | + |
|
Preference number: 5 (lower is better) Translates to: GREAGGGRDGLGVGA*GRGCGLESTRVAVG Trigger: GCCGACGGCCACCCTGGTGCTTTCCAGACCGCATCCCCGGCCCCAGGCACCTACCCCAAGTCCGTCTCTCCCGCCTCCGGCCTCCCTGCC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS GCA 90 bp | CCGGAGTACGGAGCCGGGCAGAGGCTGAGCAGGACTGCCGCCGTCTaGGCCGCTCCGCCAGCCCTCTCTACCCGAGCTGCCCTCTCCAAC | + |
|
Preference number: 5 (lower is better) Translates to: PEYGAGQRLSRTAAV*AAPPALSTRAALSN Trigger: GTTGGAGAGGGCAGCTCGGGTAGAGAGGGCTGGCGGAGCGGCGCAGACGGCGGCAGTCCTGCTCAGCCTCTGCCCGGCTCCGTACTCCGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS TCA 90 bp | GAAAAGGGCCGGGTTCGCCGAAGGCCGCGTAATCCACCTGGCCGCTaGGGAGGAAAGAGCCGCCGCCCGAGAAGACGGCCGAGGTGGCGT | + |
|
Preference number: 5 (lower is better) Translates to: EKGRVRRRPRNPPGR*GGKSRRPRRRPRWR Trigger: ACGCCACCTCGGCCGTCTTCTCGGGCGGCGGCTCTTTCCTCCTCAGCGGCCAGGTGGATTACGCGGCCTTCGGCGAACCCGGCCCTTTTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS TCA 90 bp | TGCCAAGCTGAGCACGTCGCCGCCGACCCCGCCGCTGCTGCTGCATaGCACGTACTCCAGGTAGGAGCTCATGGTTCGGGCCCCACCTTT | + |
|
Preference number: 5 (lower is better) Translates to: CQAEHVAADPAAAAA*HVLQVGAHGSGPTF Trigger: AAAGGTGGGGCCCGAACCATGAGCTCCTACCTGGAGTACGTGTCATGCAGCAGCAGCGGCGGGGTCGGCGGCGACGTGCTCAGCTTGGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS TCA 90 bp | GGGATGCGGTCTGGAAAGCACCAGGGTGGCCGTCGGCTGACGCTTTaGGACAAGCCGGAAAAGGGCCGGGTTCGCCGAAGGCCGCGTAAT | + |
|
Preference number: 5 (lower is better) Translates to: GMRSGKHQGGRRLTL*DKPEKGRVRRRPRN Trigger: ATTACGCGGCCTTCGGCGAACCCGGCCCTTTTCCGGCTTGTCTCAAAGCGTCAGCCGACGGCCACCCTGGTGCTTTCCAGACCGCATCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CAA 90 bp | CTCCTAAGTCTAGATAGGGATGGGGGTCGCCTGGGACTTCTGCAGGCCACAGTTAGTTCTGTCAGTTGCTaGGTGCTGAAATTCGTGCGG | + |
|
Preference number: 5 (lower is better) Translates to: LLSLDRDGGRLGLLQATVSSVSC*VLKFVR Trigger: CCGCACGAATTTCAGCACCAAGCAACTGACAGAACT...AACTGTGGCCTGCAGAAGTCCCAGGCGACCCCCATCCCTATCTAGACTTAGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CAA 90 bp | AAATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTCGGAGCGGCAGAACTaGGGTGCCAAGCTGAGCACG | + |
|
Preference number: 5 (lower is better) Translates to: KLKPEKLWAGALLSTSECSERQN*GAKLST Trigger: CGTGCTCAGCTTGGCACCCAAGTTCTGCCGCTCCGA...GCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAATTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CAA 90 bp | ATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTGCCGTCGGCTGACGCTTaGAGACAAGCCGGAAAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: IKTRKTLGRCSSEHIRVLPSADA*RQAGKG Trigger: CCCTTTTCCGGCTTGTCTCAAAGCGTCAGCCGACGG...CAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CAA 90 bp | GCTGGGCTGGCAGCTGGGCACCTTTTCCCTGATAAGACACAAATCATAACCAAACCATACTCGGCGAGTTaGCCTTTCTTAGAGGCATTC | + |
|
Preference number: 5 (lower is better) Translates to: AGLAAGHLFPDKTQIITKPYSAS*PFLEAF Trigger: GAATGCCTCTAAGAAAGGCAAACTCGCCGAGTATGG...TTTGGTTATGATTTGTGTCTTATCAGGGAAAAGGTGCCCAGCTGCCAGCCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CAA 90 bp | ATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTGTTCAGGTGCAAGCAGTaGGCTATCTCGATGCGCCGG | + |
|
Preference number: 5 (lower is better) Translates to: IKTRKTLGRCSSEHIRVLFRCKQ*AISMRR Trigger: CCGGCGCATCGAGATAGCCAACTGCTTGCACCTGAA...CAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CAA 90 bp | ATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTGGGGCTGCCGGGGTTCTaGATAAACTTAGTGGGGGTT | + |
|
Preference number: 5 (lower is better) Translates to: IKTRKTLGRCSSEHIRVLGLPGF*INLVGV Trigger: AACCCCCACTAAGTTTATCAAGAACCCCGGCAGCCC...CAGCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CAA 90 bp | GCTGGGCTGGCAGCTGGGCACCTTTTCCCTGATAAGACACAAATCATAACCAAAAAAACCAGAAAAACTTaGGGCAGGTGCTCTTCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: AGLAAGHLFPDKTQIITKKTRKT*GRCSSE Trigger: CTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTT...TTTGGTTATGATTTGTGTCTTATCAGGGAAAAGGTGCCCAGCTGCCAGCCCAGC 48% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS-3UTR CAA 90 bp | AAATTAAAACCAGAAAAACTTTGGGCAGGTGCTCTTCTGAGCACATCAGAGTGCTTCCAGTTCTGTCAGTaGCTTGGTGCTGAAATTCGT | + |
|
Preference number: 5 (lower is better) Translates to: KLKPEKLWAGALLSTSECFQFCQ*LGAEIR Trigger: ACGAATTTCAGCACCAAGCAACTGACAGAACTGGAA...GCACTCTGATGTGCTCAGAAGAGCACCTGCCCAAAGTTTTTCTGGTTTTAATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS GCA 72 bp | CCCGGACCCCAGGAAGCCGTAGTCCGCGCCCCCAGCTaGCGCGGCAGGTGCGGCACCAGGTTCGTAGGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: PGPQEAVVRAPS*RGRCGTRFVGP Trigger: GGGGCCTACGAACCTGGTGCCGCACCTGCCGCGGCAGCTGGGGGCGCGGACTACGGCTTCCTGGGGTCCGGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS GCA 72 bp | AGCCACGGGCCGGGCGTCGGAGCGGCAGAACTTGGGTaGCAAGCTGAGCACGTCGCCGCCGACCCCGCCGCT | + |
|
Preference number: 6 (lower is better) Translates to: SHGPGVGAAELG*QAEHVAADPAA Trigger: AGCGGCGGGGTCGGCGGCGACGTGCTCAGCTTGGCACCCAAGTTCTGCCGCTCCGACGCCCGGCCCGTGGCT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS GCA 72 bp | AAGGCGCCGTCGCCGTTGCCCAGAGGGAAGGCGGGCTaGAGAGCCACGGGCCGGGCGTCGGAGCGGCAGAAC | + |
|
Preference number: 6 (lower is better) Translates to: KAPSPLPRGKAG*RATGRASERQN Trigger: GTTCTGCCGCTCCGACGCCCGGCCCGTGGCTCTGCAGCCCGCCTTCCCTCTGGGCAACGGCGACGGCGCCTT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS CAA 90 bp | AAGGCGGGCTGCAGAGCCACGGGCCGGGCGTCGGAGCGGCAGAACTaGGGTGCCAAGCTGAGCACGTCGCCGCCGACCCCGCCGCTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: KAGCRATGRASERQN*GAKLSTSPPTPPLL Trigger: CAGCAGCGGCGGGGTCGGCGGCGACGTGCTCAGCTTGGCACCCAAGTTCTGCCGCTCCGACGCCCGGCCCGTGGCTCTGCAGCCCGCCTT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS CAA 72 bp | TGCAGAGCCACGGGCCGGGCGTCGGAGCGGCAGAACTaGGGTGCCAAGCTGAGCACGTCGCCGCCGACCCCG | + |
|
Preference number: 6 (lower is better) Translates to: CRATGRASERQN*GAKLSTSPPTP Trigger: CGGGGTCGGCGGCGACGTGCTCAGCTTGGCACCCAAGTTCTGCCGCTCCGACGCCCGGCCCGTGGCTCTGCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS CCA 72 bp | GGAGGAAAGAGCCGCCGCCCGAGAAGACGGCCGAGGTaGCGTAGTGGACGTGAGACCCGCCGTCGTCGGCCG | + |
|
Preference number: 6 (lower is better) Translates to: GGKSRRPRRRPR*RSGRETRRRRP Trigger: CGGCCGACGACGGCGGGTCTCACGTCCACTACGCCACCTCGGCCGTCTTCTCGGGCGGCGGCTCTTTCCTCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS TCA 72 bp | CGGGTTCGCCGAAGGCCGCGTAATCCACCTGGCCGCTaGGGAGGAAAGAGCCGCCGCCCGAGAAGACGGCCG | + |
|
Preference number: 6 (lower is better) Translates to: RVRRRPRNPPGR*GGKSRRPRRRP Trigger: CGGCCGTCTTCTCGGGCGGCGGCTCTTTCCTCCTCAGCGGCCAGGTGGATTACGCGGCCTTCGGCGAACCCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS CCA 72 bp | GCCGGAGGCGGGAGAGACGGACTTGGGGTAGGTGCCTaGGGCCGGGGATGCGGTCTGGAAAGCACCAGGGTG | + |
|
Preference number: 6 (lower is better) Translates to: AGGGRDGLGVGA*GRGCGLESTRV Trigger: CACCCTGGTGCTTTCCAGACCGCATCCCCGGCCCCAGGCACCTACCCCAAGTCCGTCTCTCCCGCCTCCGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS TCA 72 bp | GAGCACGTCGCCGCCGACCCCGCCGCTGCTGCTGCATaGCACGTACTCCAGGTAGGAGCTCATGGTTCGGGC | + |
|
Preference number: 6 (lower is better) Translates to: EHVAADPAAAAA*HVLQVGAHGSG Trigger: GCCCGAACCATGAGCTCCTACCTGGAGTACGTGTCATGCAGCAGCAGCGGCGGGGTCGGCGGCGACGTGCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS CCA 72 bp | CCTGGGGCCGGGGATGCGGTCTGGAAAGCACCAGGGTaGCCGTCGGCTGACGCTTTGAGACAAGCCGGAAAA | + |
|
Preference number: 6 (lower is better) Translates to: PGAGDAVWKAPG*PSADALRQAGK Trigger: TTTTCCGGCTTGTCTCAAAGCGTCAGCCGACGGCCACCCTGGTGCTTTCCAGACCGCATCCCCGGCCCCAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS TCA 72 bp | TCTGGAAAGCACCAGGGTGGCCGTCGGCTGACGCTTTaGGACAAGCCGGAAAAGGGCCGGGTTCGCCGAAGG | + |
|
Preference number: 6 (lower is better) Translates to: SGKHQGGRRLTL*DKPEKGRVRRR Trigger: CCTTCGGCGAACCCGGCCCTTTTCCGGCTTGTCTCAAAGCGTCAGCCGACGGCCACCCTGGTGCTTTCCAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS TCA 72 bp | GGATGCGGTCTGGAAAGCACCAGGGTGGCCGTCGGCTaGCGCTTTGAGACAAGCCGGAAAAGGGCCGGGTTC | + |
|
Preference number: 6 (lower is better) Translates to: GCGLESTRVAVG*RFETSRKRAGF Trigger: GAACCCGGCCCTTTTCCGGCTTGTCTCAAAGCGTCAGCCGACGGCCACCCTGGTGCTTTCCAGACCGCATCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS CCA 72 bp | TGCTGCTGCATGACACGTACTCCAGGTAGGAGCTCATaGTTCGGGCCCCACCTTTCTGAGGGCGCAGGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: CCCMTRTPGRSS*FGPHLSEGAGR Trigger: CCGGCCTGCGCCCTCAGAAAGGTGGGGCCCGAACCATGAGCTCCTACCTGGAGTACGTGTCATGCAGCAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS CAA 72 bp | GTCTGGAAAGCACCAGGGTGGCCGTCGGCTGACGCTTaGAGACAAGCCGGAAAAGGGCCGGGTTCGCCGAAG | + |
|
Preference number: 6 (lower is better) Translates to: VWKAPGWPSADA*RQAGKGPGSPK Trigger: CTTCGGCGAACCCGGCCCTTTTCCGGCTTGTCTCAAAGCGTCAGCCGACGGCCACCCTGGTGCTTTCCAGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS TCA 72 bp | AGGCATTCCTCTTCACTTTCATCCACTCGAACGTGCTaGAGGCGGCAGGGAGGCCGGAGGCGGGAGAGACGG | + |
|
Preference number: 6 (lower is better) Translates to: RHSSSLSSTRTC*RRQGGRRRERR Trigger: CCGTCTCTCCCGCCTCCGGCCTCCCTGCCGCCTTCAGCACGTTCGAGTGGATGAAAGTGAAGAGGAATGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||
| CDS CAA 72 bp | CAGATTTTGACTTGCGTGTCATTCAGGTGCAAGCAGTaGGCTATCTCGATGCGCCGGGCTCGAGTTAAGTAC | + |
|
Preference number: 6 (lower is better) Translates to: QILTCVSFRCKQ*AISMRRARVKY Trigger: GTACTTAACTCGAGCCCGGCGCATCGAGATAGCCAACTGCTTGCACCTGAATGACACGCAAGTCAAAATCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331462.6 |
||